Non-Coding RNA Search

Ss1.1-Pig4-TMW8019L18.5

Sequence:


               
               TGGCGACGCGGGAAGTCCGGACGCTGTAGCGGCCTGAAGAGGAGGCCGGCTCCGGCCGTG
GCAATGGCGGAGAGGCCCGAGGACCTAAACCTGCCCAATGCCGTCATCACCAGGATCATC
AAGGAGGCGCTCCCGGAAGGTGTCAACATCTCCAAGGAGGCCCGGAGCGCCATCTCCCGC
GCCGCCAGCGTCTTCGTGTTGTACGCCACATCCTGCGCCAACAACTTCGCGATGAAAGGG
AAACGCAAGACGCTGAATGCCAGCGATGTTCTCTCAGCCATGGAGGAGATGGAGTTTCAG
CGGTTCGTTACTCCCTTAAAAGAAGCTCTGGAAGCTTATAGAAGGGAGCAGAAAGGTAAG
AAGGAAGCTTCAGAGCAAAAGAAGAAGGACAAAGACAAAAAAACAGATTCAGAAGAGCAA
GACAAGAGCAGGGATGAGGACAACGACGAAGATGAGGAAAGGCTGGAGGAAGAAGAACAG
AATGAAGAGGAGGACGTGGACAACTGAAGAGGATGGGGAGACTGGCGCCTTGGAAGGTAC
AGCTCTGAAACGTTTGTGTGCAGCTTTTTCCTGCTGGACAGAGTAGTCTTGGGCAGAAGA
GCCTGAGAAGATGGAAGTAAAAACTGATTAAAATTATCATCAAAACCAGCGTGTCCCAGA
TTCAGAGCATCTGAGTAGCAGAATCTTGTTTTGCTTCATGAGCCTGAAGGTTATGACTTT
TTGGCAGGAGGGATTATGAACAGCCAATTGGTCACTGGGAGCATTCTTGTTTACTTACGT
ACATAGTTAGGCAGTTGTTGATCCCCAGGTCCCACCCATTCACCCACGGCTCAAAAAAGT
AACAAAGCTTCCATGCCACCTACTGCGTTCCAAATCACAGAAGCAGTCAAGACTCAGGAA
AACCTGGGGCTTTGCTTATAGACAGCCTATTTGTACAGTATTTGGCAATACTAGCTTCTT
ACAAGTGATCAGAATGGCTTAGCTTTAGGAAACCACTAAAGGGTGTAGAACAGTGAAATC
TGTTCTTTTGTCTCTTCACTTGACAGTAACATTAACTGAATTTTGGTTTTTACAGACCCA
CTTGGCTTAGAGCCCTTCTCTATTGCCAGTAGGCATGTAACCCGCTTGGGTGGCTACCTT
CTGGGCACCAAATGCATTTACATCAGCAGTGTAGAGTAGAATTAGTCAAGCAAGATTGCC
AATGTGTCTTACAACAGATGGTGTAGTCTTGAATGCACCTCACTGCCTGCCATTGTACAG
CTTTAGGGTATGTGGTCACCTCCTGGAAGGTATAAAACTCCAGGCTTTCTCTTGTAGTCC
CGCTCCCGGATTTGTGGTATGGCTTTTCATTCTTCTAATTCCTGATGAATTCCAAACTTT
CTTTCTTCTAGGTACAACGTTCTTGCTCTGTGCTTCTCTCCTGTCTCTGTTCTGCCTCTC
CTCTGCTCCCCATTCCCACTTTCTGTCCCTCCTTTTTTCACTTCTGCCAGGAACTTTGAC
GACCTGCTTAATATCTCAAACTATGGGTTCCTCTGATTCCCTAGTTCTAATCTCATGTCT
TTTAAAAATGATTTTGTAGACCTCTCTGAACGTTAAGGGAAATCCGATGGTGCTCAGGAA
TCCAATTCCTCCCCCAAGCCATCCCTTCTAAAGTATCTCTGTTAACCTTATTTTCTTTCC
ATTTGGCGCTTCAAGCACTTTTTGTCTCTAAGTTGAGTGCTTGGAGGTTGACAGGTAGTG
AAATATAGTTTGATGCTGTTCATTTGTTAAACGAATCCAGTGAAAAGTTTGTCAAGAAAT
GAGTGAAGGATATTGAGAAAATTATAATGCCTTGTATAAATAAAAAACATTCTTGTAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGACGCGGGAAGTCCGGACGCTGTAGCGGCCTGAAGAGGAGGCCGGCTCCGGCCGTG
GCAATGGCGGAGAGGCCCGAGGACCTAAACCTGCCCAATGCCGTCATCACCAGGATCATC
AAGGAGGCGCTCCCGGAAGGTGTCAACATCTCCAAGGAGGCCCGGAGCGCCATCTCCCGC
GCCGCCAGCGTCTTCGTGTTGTACGCCACATCCTGCGCCAACAACTTCGCGATGAAAGGG
AAACGCAAGACGCTGAATGCCAGCGATGTTCTCTCAGCCATGGAGGAGATGGAGTTTCAG
CGGTTCGTTACTCCCTTAAAAGAAGCTCTGGAAGCTTATAGAAGGGAGCAGAAAGGTAAG
AAGGAAGCTTCAGAGCAAAAGAAGAAGGACAAAGACAAAAAAACAGATTCAGAAGAGCAA
GACAAGAGCAGGGATGAGGACAACGACGAAGATGAGGAAAGGCTGGAGGAAGAAGAACAG
AATGAAGAGGAGGACGTGGACAACTGAAGAGGATGGGGAGACTGGCGCCTTGGAAGGTAC
AGCTCTGAAACGTTTGTGTGCAGCTTTTTCCTGCTGGACAGAGTAGTCTTGGGCAGAAGA
GCCTGAGAAGATGGAAGTAAAAACTGATTAAAATTATCATCAAAACCAGCGTGTCCCAGA
TTCAGAGCATCTGAGTAGCAGAATCTTGTTTTGCTTCATGAGCCTGAAGGTTATGACTTT
TTGGCAGGAGGGATTATGAACAGCCAATTGGTCACTGGGAGCATTCTTGTTTACTTACGT
ACATAGTTAGGCAGTTGTTGATCCCCAGGTCCCACCCATTCACCCACGGCTCAAAAAAGT
AACAAAGCTTCCATGCCACCTACTGCGTTCCAAATCACAGAAGCAGTCAAGACTCAGGAA
AACCTGGGGCTTTGCTTATAGACAGCCTATTTGTACAGTATTTGGCAATACTAGCTTCTT
ACAAGTGATCAGAATGGCTTAGCTTTAGGAAACCACTAAAGGGTGTAGAACAGTGAAATC
TGTTCTTTTGTCTCTTCACTTGACAGTAACATTAACTGAATTTTGGTTTTTACAGACCCA
CTTGGCTTAGAGCCCTTCTCTATTGCCAGTAGGCATGTAACCCGCTTGGGTGGCTACCTT
CTGGGCACCAAATGCATTTACATCAGCAGTGTAGAGTAGAATTAGTCAAGCAAGATTGCC
AATGTGTCTTACAACAGATGGTGTAGTCTTGAATGCACCTCACTGCCTGCCATTGTACAG
CTTTAGGGTATGTGGTCACCTCCTGGAAGGTATAAAACTCCAGGCTTTCTCTTGTAGTCC
CGCTCCCGGATTTGTGGTATGGCTTTTCATTCTTCTAATTCCTGATGAATTCCAAACTTT
CTTTCTTCTAGGTACAACGTTCTTGCTCTGTGCTTCTCTCCTGTCTCTGTTCTGCCTCTC
CTCTGCTCCCCATTCCCACTTTCTGTCCCTCCTTTTTTCACTTCTGCCAGGAACTTTGAC
GACCTGCTTAATATCTCAAACTATGGGTTCCTCTGATTCCCTAGTTCTAATCTCATGTCT
TTTAAAAATGATTTTGTAGACCTCTCTGAACGTTAAGGGAAATCCGATGGTGCTCAGGAA
TCCAATTCCTCCCCCAAGCCATCCCTTCTAAAGTATCTCTGTTAACCTTATTTTCTTTCC
ATTTGGCGCTTCAAGCACTTTTTGTCTCTAAGTTGAGTGCTTGGAGGTTGACAGGTAGTG
AAATATAGTTTGATGCTGTTCATTTGTTAAACGAATCCAGTGAAAAGTTTGTCAAGAAAT
GAGTGAAGGATATTGAGAAAATTATAATGCCTTGTATAAATAAAAAACATTCTTGTAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5R4W3_PONPY

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5R4W3_PONPY

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               584-696, - strand, RNAz p=0.842201
               

               
               1650-1794, - strand, RNAz p=0.911479

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               584-696, - strand, RNAz p=0.842201
               

               
               1650-1794, - strand, RNAz p=0.911479

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-154, gnl|bosTau2|chr18 (6448095-6447935)
               

               
               2-154, gnl|Hg17|chr9 (113252201-113251932)
               

               
               2-154, gnl|Mm7|chr4 (61958764-61958489)
               


               
               170-1871, gnl|bosTau2|chr18 (6447937-6446193)
               

               
               170-1871, gnl|Hg17|chr9 (113251934-113249071)
               

               
               170-1871, gnl|Mm7|chr4 (61958491-61956345)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-154, gnl|bosTau2|chr18 (6448095-6447935)
               

               
               2-154, gnl|Hg17|chr9 (113252201-113251932)
               

               
               2-154, gnl|Mm7|chr4 (61958764-61958489)
               


               
               170-1871, gnl|bosTau2|chr18 (6447937-6446193)
               

               
               170-1871, gnl|Hg17|chr9 (113251934-113249071)
               

               
               170-1871, gnl|Mm7|chr4 (61958491-61956345)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               fbs (0.526039)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 31 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               ecc (0.345105)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	584-696, - strand, RNAz p=0.842201
	1650-1794, - strand, RNAz p=0.911479

	2-154, gnl\|bosTau2\|chr18 (6448095-6447935)
	2-154, gnl\|Hg17\|chr9 (113252201-113251932)
	2-154, gnl\|Mm7\|chr4 (61958764-61958489)

	170-1871, gnl\|bosTau2\|chr18 (6447937-6446193)
	170-1871, gnl\|Hg17\|chr9 (113251934-113249071)
	170-1871, gnl\|Mm7\|chr4 (61958491-61956345)

	fbs (0.526039)
	ecc (0.345105)
	fce (0.271592)
	pla (0.267344)
	nbm (0.198649)
	fcc (0.197785)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	rec (0.17307)
	mcp (0.170648)
	fhi (0.169578)
	csp (0.161186)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ute (0.132784)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ebs (0.118301)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)