Non-Coding RNA Search

Ss1.1-Pig4-TMW8019M06.5

Sequence:


               
               TACAATCCTGCAATTCTGTGCTCAAGTTCTTTCTTTTTCTCTCCACTTTAAGATGAATTT
CTTTTTTCTTTTGTCTTTGTGCCT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TGCGCCATGACGGGAACTCCTAAGGTGAATTTCTTAGTAAGAAATAAGGTGAATCACCTT
ATCTCTCAAGTTTCTTGTCACTGGATGCTGAACCTCTAAGGTCCCTTCATTCCAGAGTTG
AACACGCTCCTGCACAGCGAGCCAAGTCTGCCAGAACCGCACCCCAAAGGCCAAAGCCAC
CCCCCCTGATGCTGCCCCCTTTGTCTCTCTCCTAAGGTAAACCCGCCCTATCATGTCCCG
CTGGTTGAGCTGGTCCCACACCCGGAGACGGCCCCCGCCACAATGGACCGAACCTACGCC
CTGATGCGGCAGATCGGCCAGTCCCCCGTCCGCATCCTGAAGGAGGTGGACGGCTTCGCC
CTGAACCGCCTGCAGTACGCGCTCATCGGCGAGGCCTGGCGGCTGGTGGAGGTACGGGAG
CTGCCGGGCGGCTGAGCAGAAAGGACAGGAGCCTTTGGGGGCGGGAGAGTCTGGCTCCGA
CCCGCTGGCTTTGCTCCAGAGACCGAGGCAAGTTCCTCTCCGGTTCAGTCAAAGGCACCA
CGCGTAAAACGTTAGGTAACGTTAGGCAGCCGATTCGCTGTGTTTCAGAGATGCCTCTGG
ACACACGGGAAGCCACTTGATGACAGGCTTCTCTCTGGCCCTTTCATGTTGTCACCACGT
AATGACCGCTGCGATTTTCCCACCGTCTCAGATTCCGTACCCGCCCCTAACCCCAGGGTT
ATAGCTTTTCAGGAGGAAAACAAAAATGTATTTTGAGTAAATGTGTATCCTGTAGCCCAA
GTCCTTTCAGGAGCTTGAGGAAGAAACACTGGAGGACCTTTAAATCTGTTAATAACATTC
TTGTCTTACCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAATCCTGCAATTCTGTGCTCAAGTTCTTTCTTTTTCTCTCCACTTTAAGATGAATTT
CTTTTTTCTTTTGTCTTTGTGCCT------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
TGCGCCATGACGGGAACTCCTAAGGTGAATTTCTTAGTAAGAAATAAGGTGAATCACCTT
ATCTCTCAAGTTTCTTGTCACTGGATGCTGAACCTCTAAGGTCCCTTCATTCCAGAGTTG
AACACGCTCCTGCACAGCGAGCCAAGTCTGCCAGAACCGCACCCCAAAGGCCAAAGCCAC
CCCCCCTGATGCTGCCCCCTTTGTCTCTCTCCTAAGGTAAACCCGCCCTATCATGTCCCG
CTGGTTGAGCTGGTCCCACACCCGGAGACGGCCCCCGCCACAATGGACCGAACCTACGCC
CTGATGCGGCAGATCGGCCAGTCCCCCGTCCGCATCCTGAAGGAGGTGGACGGCTTCGCC
CTGAACCGCCTGCAGTACGCGCTCATCGGCGAGGCCTGGCGGCTGGTGGAGGTACGGGAG
CTGCCGGGCGGCTGAGCAGAAAGGACAGGAGCCTTTGGGGGCGGGAGAGTCTGGCTCCGA
CCCGCTGGCTTTGCTCCAGAGACCGAGGCAAGTTCCTCTCCGGTTCAGTCAAAGGCACCA
CGCGTAAAACGTTAGGTAACGTTAGGCAGCCGATTCGCTGTGTTTCAGAGATGCCTCTGG
ACACACGGGAAGCCACTTGATGACAGGCTTCTCTCTGGCCCTTTCATGTTGTCACCACGT
AATGACCGCTGCGATTTTCCCACCGTCTCAGATTCCGTACCCGCCCCTAACCCCAGGGTT
ATAGCTTTTCAGGAGGAAAACAAAAATGTATTTTGAGTAAATGTGTATCCTGTAGCCCAA
GTCCTTTCAGGAGCTTGAGGAAGAAACACTGGAGGACCTTTAAATCTGTTAATAACATTC
TTGTCTTACCCT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               184-497, gnl|bosTau2|chr12 (20033546-20033861)
               

               
               184-497, gnl|Hg17|chr13 (19904544-19904239)
               


               
               698-933, gnl|bosTau2|chr12 (20034051-20034293)
               

               
               698-933, gnl|Hg17|chr13 (19904000-19903768)
               

               
               698-933, gnl|Mm7|chr14 (52171108-52170880)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               184-497, gnl|bosTau2|chr12 (20033546-20033861)
               

               
               184-497, gnl|Hg17|chr13 (19904544-19904239)
               


               
               698-933, gnl|bosTau2|chr12 (20034051-20034293)
               

               
               698-933, gnl|Hg17|chr13 (19904000-19903768)
               

               
               698-933, gnl|Mm7|chr14 (52171108-52170880)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nje (0.16592)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)

	184-497, gnl\|bosTau2\|chr12 (20033546-20033861)
	184-497, gnl\|Hg17\|chr13 (19904544-19904239)

	698-933, gnl\|bosTau2\|chr12 (20034051-20034293)
	698-933, gnl\|Hg17\|chr13 (19904000-19903768)
	698-933, gnl\|Mm7\|chr14 (52171108-52170880)