Non-Coding RNA Search

Ss1.1-Pig4-TMW8019N01.5

Sequence:


               
               AAGGCACGCAAGTGAAGTCACCATGCTGTCGACCAAGTCTATGGTTCTGGGTTACTGGGA
TATTCGCGGGCTGGCGCATGCCATCCGCATGCTCCTGGAGTTCACTGATACATCCTATGA
AGAGAAACGGTACATCTGCGGGGAAGCTCCTGACTATGATAGAAGCCAGTGGCTGGATGT
GAAATACAAACTAGACCTGGACTTTCCTAACCTGCCCTATCTCATGGACGGGAAGAACAA
GCTCACCCAGAGCAATGCCATCTTGCGCTACATCGCCCGCAAGCACAACATGTGTGGGGA
GACTGAAGAAGAAAAGATTCGAGTGGACATCATGGAGAACCAAATAATGGATTTTCGCAT
GCAGCTGATAAGACTCTGCTATAGTCCTGATCACGAAAAGCTGAAGCCTCAGTACTTGGA
ACAGCTACCTGGACAACTGAAACAGTTCTCCTTGTTCCTGGGGAAATACTCATGGTTTGC
AGGGGAAAAGCTCACGTTTGTGGATTTCCTTACCTACGACGTCTTAGATCAGAACCGTAT
CTTTGAGCCCAGGTGCCTGGATGAATTTCCAAATCTGAAGGCTTTCATGTGCCGTTTTGA
GGCTTTGGAGAAAATAGCTGCCTACATGCAGTCTGACCGCTTCCTCAAGATGCCTATCAA
CAACAAGATGGCCCAGTGGGGCAACAAGAGACTATACTGAGCACCAGGCGGACTTGCACT
GCTTGTTTTGTTCCACCCTGTCCCTTGGGGACCTGTACTCTCTCTTCTCTGCTCCTTTCA
ATAAATAGCACTTCGGCTAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGCACGCAAGTGAAGTCACCATGCTGTCGACCAAGTCTATGGTTCTGGGTTACTGGGA
TATTCGCGGGCTGGCGCATGCCATCCGCATGCTCCTGGAGTTCACTGATACATCCTATGA
AGAGAAACGGTACATCTGCGGGGAAGCTCCTGACTATGATAGAAGCCAGTGGCTGGATGT
GAAATACAAACTAGACCTGGACTTTCCTAACCTGCCCTATCTCATGGACGGGAAGAACAA
GCTCACCCAGAGCAATGCCATCTTGCGCTACATCGCCCGCAAGCACAACATGTGTGGGGA
GACTGAAGAAGAAAAGATTCGAGTGGACATCATGGAGAACCAAATAATGGATTTTCGCAT
GCAGCTGATAAGACTCTGCTATAGTCCTGATCACGAAAAGCTGAAGCCTCAGTACTTGGA
ACAGCTACCTGGACAACTGAAACAGTTCTCCTTGTTCCTGGGGAAATACTCATGGTTTGC
AGGGGAAAAGCTCACGTTTGTGGATTTCCTTACCTACGACGTCTTAGATCAGAACCGTAT
CTTTGAGCCCAGGTGCCTGGATGAATTTCCAAATCTGAAGGCTTTCATGTGCCGTTTTGA
GGCTTTGGAGAAAATAGCTGCCTACATGCAGTCTGACCGCTTCCTCAAGATGCCTATCAA
CAACAAGATGGCCCAGTGGGGCAACAAGAGACTATACTGAGCACCAGGCGGACTTGCACT
GCTTGTTTTGTTCCACCCTGTCCCTTGGGGACCTGTACTCTCTCTTCTCTGCTCCTTTCA
ATAAATAGCACTTCGGCTAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|6754086|ref|NP_034490.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6754086|ref|NP_034490.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               42-602, gnl|bosTau2|chr29 (27087411-27087953)
               

               
               42-602, gnl|Hg17|chr6 (111475410-111474850)
               

               
               42-602, gnl|Mm7|chr5 (115863153-115862593)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               42-602, gnl|bosTau2|chr29 (27087411-27087953)
               

               
               42-602, gnl|Hg17|chr6 (111475410-111474850)
               

               
               42-602, gnl|Mm7|chr5 (115863153-115862593)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               tes (3.74065)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (3.74065)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               fhi (0.339155)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	42-602, gnl\|bosTau2\|chr29 (27087411-27087953)
	42-602, gnl\|Hg17\|chr6 (111475410-111474850)
	42-602, gnl\|Mm7\|chr5 (115863153-115862593)

	tes (3.74065)
	eje (0.395335)
	elu (0.385356)
	fhi (0.339155)
	fce (0.271592)
	pla (0.267344)
	fty (0.17584)
	mcp (0.170648)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	hyp (0.142837)
	eru (0.120048)
	ebs (0.118301)