Ss1.1-Pig4-TMW8019N09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGATGGGATTGTGGCCAAAGATATTTGACATCGTGGCCTCGGGACTGAAAGAAGCCCA GACACCCAAGAGCACCAACAACACAGAAGTCTCCAAAGGTGATGGACACAGGAGCACTGG GACAAGTCCAAAGCCAGCTACTTGGTGCAGACAAACGGTGTCATGACTCCTTTTATACTG TCCCACAGAATGACAAATCCAGCCTCAGGGAAGGCAGCAAGTAAGGCTGAGACTCCAAGT GGGTAGGAGGCACAGGCCCAGAATCTTTGGTAAGGCGTGAGCTGGAACTGGGCTGAGAGC TGGGCTTGGGCCTGGGCAGGCTCTGTTCTCTGGCCCAGCGGCTGCCCTTGGTCTACGTGA GGCCCAGGACGGCCTGGAGCTCTTGGGCCTTGTCAGCAGGCAGCGAGCCCAGTGCCGAAT AGAAGCTGTCGGAGTGCTGTTTGGCCAAGAATGTCAGGAGCAGCAGCAGTGCCGCCTTGG TGTCTGCTGGGATCTTGTTCTCAGCCAGAATGAGGCTACAAATGCGCAAGAGCTCGGGAG CCACATCTACAACCTGGTCAGGGCTGCTCTGATGCAGGAAGCTGAAGAGATGTCCTATGG TGACCCACTCCTCCAAGTCCTCCTTCAGTGGCAGGGCATGCAGCAGAGCAGCCAGCACCT GGGGCTCCGGTTTCCTTGTGGGACTGGCCATCAGCAGGCGGGCAAGTGCCCCACAGATGT TGTCGTGGACACGATCATGGCGCTCCCGCGCCAGCAGGGGCAAGAGGAGCCCCAGCAGCT TGGGGAAGTGTTCCTGGGCAGGGCGGCCCCCGTGCTCTGCCAGCACGCCCAGCCCGAAGA TGGCATTGCTCCGCACCTCGGGGTCTGTCTCCCGGGCGGTGCTCAGCAGCGCAGGGAACA GCCGGGACACAAACTGGGCCGAGGCGGCACCCAGGCCCTGGATGGACTCAGCCAGCGTCC CCACCGCAAAGGACTTCTCTGCCACTGTGCAGCCCTGTTTTGTCTTGCAGAGCAGTAACG GCAGGAAGCCAGCAAAGAAGGGGGCAAAGGCATCCCCGCCAGCCGCAGCTGCCAGGGCAG GGATGGCCTCGCCAGCGTGCTCCAGCAACATGGCGTCGTATTCAGCCTGGTCCTCTTCCT CCTCCTCGTCCGCATCCTGACAGGCTGTCTTCCTCTGCAGCACGGCCTTGAGCATGTGGC AGAGCTCCGCAAGCCGCCCAGGGGGCTGCAGAGCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGATGGGATTGTGGCCAAAGATATTTGACATCGTGGCCTCGGGACTGAAAGAAGCCCA GACACCCAAGAGCACCAACAACACAGAAGTCTCCAAAGGTGATGGACACAGGAGCACTGG GACAAGTCCAAAGCCAGCTACTTGGTGCAGACAAACGGTGTCATGACTCCTTTTATACTG TCCCACAGAATGACAAATCCAGCCTCAGGGAAGGCAGCAAGTAAGGCTGAGACTCCAAGT GGGTAGGAGGCACAGGCCCAGAATCTTTGGTAAGGCGTGAGCTGGAACTGGGCTGAGAGC TGGGCTTGGGCCTGGGCAGGCTCTGTTCTCTGGCCCAGCGGCTGCCCTTGGTCTACGTGA GGCCCAGGACGGCCTGGAGCTCTTGGGCCTTGTCAGCAGGCAGCGAGCCCAGTGCCGAAT AGAAGCTGTCGGAGTGCTGTTTGGCCAAGAATGTCAGGAGCAGCAGCAGTGCCGCCTTGG TGTCTGCTGGGATCTTGTTCTCAGCCAGAATGAGGCTACAAATGCGCAAGAGCTCGGGAG CCACATCTACAACCTGGTCAGGGCTGCTCTGATGCAGGAAGCTGAAGAGATGTCCTATGG TGACCCACTCCTCCAAGTCCTCCTTCAGTGGCAGGGCATGCAGCAGAGCAGCCAGCACCT GGGGCTCCGGTTTCCTTGTGGGACTGGCCATCAGCAGGCGGGCAAGTGCCCCACAGATGT TGTCGTGGACACGATCATGGCGCTCCCGCGCCAGCAGGGGCAAGAGGAGCCCCAGCAGCT TGGGGAAGTGTTCCTGGGCAGGGCGGCCCCCGTGCTCTGCCAGCACGCCCAGCCCGAAGA TGGCATTGCTCCGCACCTCGGGGTCTGTCTCCCGGGCGGTGCTCAGCAGCGCAGGGAACA GCCGGGACACAAACTGGGCCGAGGCGGCACCCAGGCCCTGGATGGACTCAGCCAGCGTCC CCACCGCAAAGGACTTCTCTGCCACTGTGCAGCCCTGTTTTGTCTTGCAGAGCAGTAACG GCAGGAAGCCAGCAAAGAAGGGGGCAAAGGCATCCCCGCCAGCCGCAGCTGCCAGGGCAG GGATGGCCTCGCCAGCGTGCTCCAGCAACATGGCGTCGTATTCAGCCTGGTCCTCTTCCT CCTCCTCGTCCGCATCCTGACAGGCTGTCTTCCTCTGCAGCACGGCCTTGAGCATGTGGC AGAGCTCCGCAAGCCGCCCAGGGGGCTGCAGAGCCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 318-423, - strand, RNAz p=0.601085 | |
| 657-775, + strand, RNAz p=0.952019 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 318-423, - strand, RNAz p=0.601085 | |
| 657-775, + strand, RNAz p=0.952019 |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 211-486, gnl|bosTau2|chr10 (12307207-12306930) | |
| 211-486, gnl|canFam2|chr8 (7177229-7177776) | |
| 211-486, gnl|dasNov1|scaffold_139560 (4016-4513) | |
| 211-486, gnl|echTel1|scaffold_316077 (56157-56675) | |
| 211-486, gnl|hg17|chr14 (23719218-23719768) | |
| 211-486, gnl|Hg17|chr14 (23719353-23719621) | |
| 211-486, gnl|mm7|chr14 (50492932-50493536) | |
| 211-486, gnl|Mm7|chr14 (50493159-50493393) | |
| 211-486, gnl|monDom2|scaffold_12 (25585145-25584607) | |
| 211-486, gnl|oryCun1|scaffold_178102 (62517-63014) | |
| 211-486, gnl|panTro1|chr15 (22620849-22621399) | |
| 211-486, gnl|rheMac2|chr7 (87074860-87075410) | |
| 211-486, gnl|rn3|chr15 (33777137-33777628) | |
| 657-791, gnl|bosTau2|chr10 (12305841-12305707) | |
| 657-791, gnl|canFam2|chr8 (7178579-7178814) | |
| 657-791, gnl|dasNov1|scaffold_39187 (14910-14676) | |
| 657-791, gnl|echTel1|scaffold_316077 (57392-57629) | |
| 657-791, gnl|hg17|chr14 (23720670-23720908) | |
| 657-791, gnl|Hg17|chr14 (23720755-23720889) | |
| 657-791, gnl|loxAfr1|scaffold_141178 (900-671) | |
| 657-791, gnl|mm7|chr14 (50494800-50495035) | |
| 657-791, gnl|Mm7|chr14 (50494882-50495016) | |
| 657-791, gnl|monDom2|scaffold_12 (25584340-25584102) | |
| 657-791, gnl|oryCun1|scaffold_178102 (63662-63881) | |
| 657-791, gnl|panTro1|chr15 (22622301-22622539) | |
| 657-791, gnl|rheMac2|chr7 (87076621-87076859) | |
| 657-791, gnl|rn3|chr15 (33778849-33779080) | |
| 792-1000, gnl|bosTau2|chr10 (12305597-12305389) | |
| 792-1000, gnl|Hg17|chr14 (23721001-23721209) | |
| 792-1000, gnl|Mm7|chr14 (50495134-50495342) | |
| 1002-1128, gnl|bosTau2|chr10 (12305284-12305158) | |
| 1002-1128, gnl|canFam2|chr8 (7179122-7179525) | |
| 1002-1128, gnl|dasNov1|scaffold_39187 (14360-13942) | |
| 1002-1128, gnl|echTel1|scaffold_316077 (57927-58246) | |
| 1002-1128, gnl|hg17|chr14 (23721230-23721629) | |
| 1002-1128, gnl|Hg17|chr14 (23721325-23721451) | |
| 1002-1128, gnl|mm7|chr14 (50495359-50495748) | |
| 1002-1128, gnl|Mm7|chr14 (50495456-50495582) | |
| 1002-1128, gnl|monDom2|scaffold_12 (25583456-25583018) | |
| 1002-1128, gnl|oryCun1|scaffold_178102 (64195-64533) | |
| 1002-1128, gnl|panTro1|chr15 (22622861-22623260) | |
| 1002-1128, gnl|rheMac2|chr7 (87077181-87077580) | |
| 1002-1128, gnl|rn3|chr15 (33779405-33779780) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 211-486, gnl|bosTau2|chr10 (12307207-12306930) | |
| 211-486, gnl|canFam2|chr8 (7177229-7177776) | |
| 211-486, gnl|dasNov1|scaffold_139560 (4016-4513) | |
| 211-486, gnl|echTel1|scaffold_316077 (56157-56675) | |
| 211-486, gnl|hg17|chr14 (23719218-23719768) | |
| 211-486, gnl|Hg17|chr14 (23719353-23719621) | |
| 211-486, gnl|mm7|chr14 (50492932-50493536) | |
| 211-486, gnl|Mm7|chr14 (50493159-50493393) | |
| 211-486, gnl|monDom2|scaffold_12 (25585145-25584607) | |
| 211-486, gnl|oryCun1|scaffold_178102 (62517-63014) | |
| 211-486, gnl|panTro1|chr15 (22620849-22621399) | |
| 211-486, gnl|rheMac2|chr7 (87074860-87075410) | |
| 211-486, gnl|rn3|chr15 (33777137-33777628) | |
| 657-791, gnl|bosTau2|chr10 (12305841-12305707) | |
| 657-791, gnl|canFam2|chr8 (7178579-7178814) | |
| 657-791, gnl|dasNov1|scaffold_39187 (14910-14676) | |
| 657-791, gnl|echTel1|scaffold_316077 (57392-57629) | |
| 657-791, gnl|hg17|chr14 (23720670-23720908) | |
| 657-791, gnl|Hg17|chr14 (23720755-23720889) | |
| 657-791, gnl|loxAfr1|scaffold_141178 (900-671) | |
| 657-791, gnl|mm7|chr14 (50494800-50495035) | |
| 657-791, gnl|Mm7|chr14 (50494882-50495016) | |
| 657-791, gnl|monDom2|scaffold_12 (25584340-25584102) | |
| 657-791, gnl|oryCun1|scaffold_178102 (63662-63881) | |
| 657-791, gnl|panTro1|chr15 (22622301-22622539) | |
| 657-791, gnl|rheMac2|chr7 (87076621-87076859) | |
| 657-791, gnl|rn3|chr15 (33778849-33779080) | |
| 792-1000, gnl|bosTau2|chr10 (12305597-12305389) | |
| 792-1000, gnl|Hg17|chr14 (23721001-23721209) | |
| 792-1000, gnl|Mm7|chr14 (50495134-50495342) | |
| 1002-1128, gnl|bosTau2|chr10 (12305284-12305158) | |
| 1002-1128, gnl|canFam2|chr8 (7179122-7179525) | |
| 1002-1128, gnl|dasNov1|scaffold_39187 (14360-13942) | |
| 1002-1128, gnl|echTel1|scaffold_316077 (57927-58246) | |
| 1002-1128, gnl|hg17|chr14 (23721230-23721629) | |
| 1002-1128, gnl|Hg17|chr14 (23721325-23721451) | |
| 1002-1128, gnl|mm7|chr14 (50495359-50495748) | |
| 1002-1128, gnl|Mm7|chr14 (50495456-50495582) | |
| 1002-1128, gnl|monDom2|scaffold_12 (25583456-25583018) | |
| 1002-1128, gnl|oryCun1|scaffold_178102 (64195-64533) | |
| 1002-1128, gnl|panTro1|chr15 (22622861-22623260) | |
| 1002-1128, gnl|rheMac2|chr7 (87077181-87077580) | |
| 1002-1128, gnl|rn3|chr15 (33779405-33779780) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nbm (0.198649) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nbm (0.198649) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| jej (0.0989218) |