Ss1.1-Pig4-TMW8019O03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAGAGTGATGGCATGCCGAAGGATGCCAAGTACCTGTTCCGCTTGTACATGGCGCTGA AGCAGTACCGAGAGGCCGCGCGCACCGCCATCATCATCGCCAGGGAAGAGCAGTCTGCAG GGAACTATCGGAACGCACATGACGTTCTCTTCAGCATGTACGCGGAACTGAAAGCCCAGA AGATCAAGATCCCCTCCGAGATGGCCACCAACCTCATGATTCTGCACAGTTACATCCTGG TGAAGATTCATGTTAAAAATGGAGATCATATGAAAGGGGCGCGTATGCTTATCCGGGTGG CCAACAATATCAGCAAATTTCCGTCACACATCGTGCCCATCCTGACGTCCACTGTCATCG AGTGTCACAGGGCTGGCCTGAAGAACTCTGCCTTCAGCTTTGCAGCCACGTTGATGCGGC CCGAGTACCGCAACAAGATAGATGCCAAATACAAAAAGAAGATTGAGGCAATGGTCAGGA GACCTGATACATCCGAGACAGAAGAGGCCACCACCCCGTGCCCATTCTGCGAATTTCTTC TCCCAGAGTGCGAACTCCTCTGTCCTGGATGTAAAAATAACATCCCATATTGCATCGCAA CAGGTCGACACATGCTGAAGGATGACTGGACGGTGTGTCCACACTGTGACTTCCCTGCTT TGTACTCAGAATTCAAGAGAATGTTAAACACTGAGAGAACATGTCCTATGTGTTCAGAAA GATTAAACTTGGCTCAACTGAAGAAAATCTCAGACTACACCCAGTACCTGCAGACAGAAG TGGAGCAGTGATTGGCACGTGCAGGTACAATGTTCCTGAGAAAATAGCATTTTTCCACAG GAGACTGTGTTCCTACCCCTGGCAGATTTTAGAGATGGTCCTTCCTGGATATAGGAGGAA AAAAAGGTCACCTCTCCAGGTCACTATTTTCGCCTTCTATAAAGTGGCACAACAGTGATA TGTAACATGCTGTTTATTATACTTTGTATATTTCTCCTTCTGAGTCTTACATAGTCTAAG CTCTGCACTGGTAATGGTAACCTATGACATAACTGTAAATATTCAGCTTTTTGATATCTT TTATATTTTAAAATACCTCCTTTAAAATAAACTTATTGTTTAGATAAAAAAAAAAAAAAA CTGGATTTAAAGACAGAAAAGATGCTTTGAAGCATATTGTGAAGCAGCAGCATAGATGTT GGTGTTAAAAAGTTTGAACTAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAGAGTGATGGCATGCCGAAGGATGCCAAGTACCTGTTCCGCTTGTACATGGCGCTGA AGCAGTACCGAGAGGCCGCGCGCACCGCCATCATCATCGCCAGGGAAGAGCAGTCTGCAG GGAACTATCGGAACGCACATGACGTTCTCTTCAGCATGTACGCGGAACTGAAAGCCCAGA AGATCAAGATCCCCTCCGAGATGGCCACCAACCTCATGATTCTGCACAGTTACATCCTGG TGAAGATTCATGTTAAAAATGGAGATCATATGAAAGGGGCGCGTATGCTTATCCGGGTGG CCAACAATATCAGCAAATTTCCGTCACACATCGTGCCCATCCTGACGTCCACTGTCATCG AGTGTCACAGGGCTGGCCTGAAGAACTCTGCCTTCAGCTTTGCAGCCACGTTGATGCGGC CCGAGTACCGCAACAAGATAGATGCCAAATACAAAAAGAAGATTGAGGCAATGGTCAGGA GACCTGATACATCCGAGACAGAAGAGGCCACCACCCCGTGCCCATTCTGCGAATTTCTTC TCCCAGAGTGCGAACTCCTCTGTCCTGGATGTAAAAATAACATCCCATATTGCATCGCAA CAGGTCGACACATGCTGAAGGATGACTGGACGGTGTGTCCACACTGTGACTTCCCTGCTT TGTACTCAGAATTCAAGAGAATGTTAAACACTGAGAGAACATGTCCTATGTGTTCAGAAA GATTAAACTTGGCTCAACTGAAGAAAATCTCAGACTACACCCAGTACCTGCAGACAGAAG TGGAGCAGTGATTGGCACGTGCAGGTACAATGTTCCTGAGAAAATAGCATTTTTCCACAG GAGACTGTGTTCCTACCCCTGGCAGATTTTAGAGATGGTCCTTCCTGGATATAGGAGGAA AAAAAGGTCACCTCTCCAGGTCACTATTTTCGCCTTCTATAAAGTGGCACAACAGTGATA TGTAACATGCTGTTTATTATACTTTGTATATTTCTCCTTCTGAGTCTTACATAGTCTAAG CTCTGCACTGGTAATGGTAACCTATGACATAACTGTAAATATTCAGCTTTTTGATATCTT TTATATTTTAAAATACCTCCTTTAAAATAAACTTATTGTTTAGATAAAAAAAAAAAAAAA CTGGATTTAAAGACAGAAAAGATGCTTTGAAGCATATTGTGAAGCAGCAGCATAGATGTT GGTGTTAAAAAGTTTGAACTAAGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 119-243, gnl|bosTau2|chr6 (32060411-32060535) | |
| 119-243, gnl|canFam2|chr3 (75979850-75979706) | |
| 119-243, gnl|danRer3|chr1 (18623001-18622862) | |
| 119-243, gnl|dasNov1|scaffold_5400 (45770-45626) | |
| 119-243, gnl|echTel1|scaffold_316249 (94482-94339) | |
| 119-243, gnl|fr1|chrUn (321617129-321616993) | |
| 119-243, gnl|galGal2|chr4 (69693190-69693330) | |
| 119-243, gnl|hg17|chr4 (39094153-39094297) | |
| 119-243, gnl|Hg17|chr4 (39094160-39094284) | |
| 119-243, gnl|loxAfr1|scaffold_59164 (1160-1303) | |
| 119-243, gnl|mm7|chr5 (64607082-64607223) | |
| 119-243, gnl|Mm7|chr5 (64607088-64607212) | |
| 119-243, gnl|monDom2|scaffold_26 (4398009-4398153) | |
| 119-243, gnl|oryCun1|scaffold_199568 (60830-60688) | |
| 119-243, gnl|panTro1|chr3 (41781997-41782141) | |
| 119-243, gnl|rheMac2|chr5 (34229651-34229795) | |
| 119-243, gnl|rn3|chr14 (45754972-45754831) | |
| 119-243, gnl|tetNig1|chrUn_random (51254163-51254299) | |
| 119-243, gnl|xenTro1|scaffold_84 (2147694-2147554) | |
| 325-479, gnl|bosTau2|chr6 (32065257-32065411) | |
| 325-479, gnl|canFam2|chr3 (75975585-75975376) | |
| 325-479, gnl|danRer3|chr1 (18618793-18618590) | |
| 325-479, gnl|dasNov1|scaffold_5400 (39083-38876) | |
| 325-479, gnl|echTel1|scaffold_316249 (90079-89867) | |
| 325-479, gnl|fr1|chrUn (321616705-321616534) | |
| 325-479, gnl|galGal2|chr4 (69695479-69695679) | |
| 325-479, gnl|hg17|chr4 (39098970-39099180) | |
| 325-479, gnl|Hg17|chr4 (39098991-39099145) | |
| 325-479, gnl|loxAfr1|scaffold_59164 (5916-6125) | |
| 325-479, gnl|mm7|chr5 (64611068-64611278) | |
| 325-479, gnl|Mm7|chr5 (64611089-64611243) | |
| 325-479, gnl|monDom2|scaffold_26 (4404246-4404443) | |
| 325-479, gnl|oryCun1|scaffold_199568 (56037-55832) | |
| 325-479, gnl|panTro1|chr3 (41786823-41787033) | |
| 325-479, gnl|rheMac2|chr5 (34234180-34234389) | |
| 325-479, gnl|rn3|chr14 (45751081-45750888) | |
| 325-479, gnl|tetNig1|chrUn_random (51254725-51254889) | |
| 325-479, gnl|xenTro1|scaffold_84 (2144867-2144648) | |
| 792-1172, gnl|bosTau2|chr6 (32075158-32075525) | |
| 792-1172, gnl|canFam2|chr3 (75963232-75962866) | |
| 792-1172, gnl|dasNov1|scaffold_154333 (907-1267) | |
| 792-1172, gnl|echTel1|scaffold_316249 (83378-83008) | |
| 792-1172, gnl|hg17|chr4 (39109653-39110044) | |
| 792-1172, gnl|Hg17|chr4 (39109660-39110103) | |
| 792-1172, gnl|loxAfr1|scaffold_16015 (18366-17977) | |
| 792-1172, gnl|mm7|chr5 (64614907-64615265) | |
| 792-1172, gnl|Mm7|chr5 (64614911-64615261) | |
| 792-1172, gnl|oryCun1|scaffold_199568 (40538-40191) | |
| 792-1172, gnl|panTro1|chr3 (41797559-41797949) | |
| 792-1172, gnl|rheMac2|chr5 (34245174-34245591) | |
| 792-1172, gnl|rn3|chr14 (45745180-45744844) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-243, gnl|bosTau2|chr6 (32060411-32060535) | |
| 119-243, gnl|canFam2|chr3 (75979850-75979706) | |
| 119-243, gnl|danRer3|chr1 (18623001-18622862) | |
| 119-243, gnl|dasNov1|scaffold_5400 (45770-45626) | |
| 119-243, gnl|echTel1|scaffold_316249 (94482-94339) | |
| 119-243, gnl|fr1|chrUn (321617129-321616993) | |
| 119-243, gnl|galGal2|chr4 (69693190-69693330) | |
| 119-243, gnl|hg17|chr4 (39094153-39094297) | |
| 119-243, gnl|Hg17|chr4 (39094160-39094284) | |
| 119-243, gnl|loxAfr1|scaffold_59164 (1160-1303) | |
| 119-243, gnl|mm7|chr5 (64607082-64607223) | |
| 119-243, gnl|Mm7|chr5 (64607088-64607212) | |
| 119-243, gnl|monDom2|scaffold_26 (4398009-4398153) | |
| 119-243, gnl|oryCun1|scaffold_199568 (60830-60688) | |
| 119-243, gnl|panTro1|chr3 (41781997-41782141) | |
| 119-243, gnl|rheMac2|chr5 (34229651-34229795) | |
| 119-243, gnl|rn3|chr14 (45754972-45754831) | |
| 119-243, gnl|tetNig1|chrUn_random (51254163-51254299) | |
| 119-243, gnl|xenTro1|scaffold_84 (2147694-2147554) | |
| 325-479, gnl|bosTau2|chr6 (32065257-32065411) | |
| 325-479, gnl|canFam2|chr3 (75975585-75975376) | |
| 325-479, gnl|danRer3|chr1 (18618793-18618590) | |
| 325-479, gnl|dasNov1|scaffold_5400 (39083-38876) | |
| 325-479, gnl|echTel1|scaffold_316249 (90079-89867) | |
| 325-479, gnl|fr1|chrUn (321616705-321616534) | |
| 325-479, gnl|galGal2|chr4 (69695479-69695679) | |
| 325-479, gnl|hg17|chr4 (39098970-39099180) | |
| 325-479, gnl|Hg17|chr4 (39098991-39099145) | |
| 325-479, gnl|loxAfr1|scaffold_59164 (5916-6125) | |
| 325-479, gnl|mm7|chr5 (64611068-64611278) | |
| 325-479, gnl|Mm7|chr5 (64611089-64611243) | |
| 325-479, gnl|monDom2|scaffold_26 (4404246-4404443) | |
| 325-479, gnl|oryCun1|scaffold_199568 (56037-55832) | |
| 325-479, gnl|panTro1|chr3 (41786823-41787033) | |
| 325-479, gnl|rheMac2|chr5 (34234180-34234389) | |
| 325-479, gnl|rn3|chr14 (45751081-45750888) | |
| 325-479, gnl|tetNig1|chrUn_random (51254725-51254889) | |
| 325-479, gnl|xenTro1|scaffold_84 (2144867-2144648) | |
| 792-1172, gnl|bosTau2|chr6 (32075158-32075525) | |
| 792-1172, gnl|canFam2|chr3 (75963232-75962866) | |
| 792-1172, gnl|dasNov1|scaffold_154333 (907-1267) | |
| 792-1172, gnl|echTel1|scaffold_316249 (83378-83008) | |
| 792-1172, gnl|hg17|chr4 (39109653-39110044) | |
| 792-1172, gnl|Hg17|chr4 (39109660-39110103) | |
| 792-1172, gnl|loxAfr1|scaffold_16015 (18366-17977) | |
| 792-1172, gnl|mm7|chr5 (64614907-64615265) | |
| 792-1172, gnl|Mm7|chr5 (64614911-64615261) | |
| 792-1172, gnl|oryCun1|scaffold_199568 (40538-40191) | |
| 792-1172, gnl|panTro1|chr3 (41797559-41797949) | |
| 792-1172, gnl|rheMac2|chr5 (34245174-34245591) | |
| 792-1172, gnl|rn3|chr14 (45745180-45744844) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cbl (0.229595) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| duo (0.172801) | |
| liv (0.146284) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| sag (0.182715) | |
| duo (0.172801) | |
| liv (0.146284) | |
| kid (0.129735) | |
| cbr (0.127975) | |
| bla (0.124347) | |
| tra (0.123092) |