Ss1.1-Pig4-TMW8019O06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGAGGAGGGCCCCGACTTGGAGGAGTCCAGTGCTGGTTACAAAAAGGTGTTTGCAGAT GCCCAGCAGCTGCAGCCGCTGCAGGTGTACCAGGCACCCCTCAGCCTGGCCACTGTGCCC CACCAGGCCCTGGGCCGCACCCAGTCCTCACCTGCTGCCCCAGGGGGCATGAAGAGCCCC CCAGACCAGCCCACCAAGCACCTCTTCACCACAGGTGTGGTCTACGACACGTTCATGCTG AAGCACCAGTGCATGTGCGGGAACACACACGTGCACCCGGAGCACGCTGGCCGGATTCAG AGCATCTGGTCCCGGCTGCAGGAAACAGGCCTGCTCAGCAAGTGTGAGCGGATTCGGGGT CGCAAAGCCACGCTGGACGAGATCCAGACGGTGCACTCCGAGTACCACACCCTGCTCTAT GGGACCAGCCCCCTCAACCGCCAGAAGCTGGACAGCAAGAAGCTGCTGGGCCCCATCAGC CAGAAGATGTATGCTGTGCTGCCCTGCGGGGGCATCGGGGTGGACAGCGACACAGTGTGG AATGAGATGCACTCCTCCAGTGCTGTGCGCATGGCGGTGGGCTGCCTGGTGGAGCTGGCA TTCAAGGTGGCTGCGGGGGAGCTCAAGAATGGATTTGCCATCATCCGGCCCCCAGGCCAC CACGCGGAGGAATCCACAGCCATGGGATTCTGCTTCTTCAACTCTGTAGCCATCACAACC AAACTTCTGCAGCAGAAGCTGAACGTGGGCAAGGTTCTCATCGTGGACTGGGACATACAC CACGGCAATGGCACCCAGCAAGCATTCTACAACGACCCCTCCGTGCTCTATATCTCTCTG CATCGCTATGACAATGGGAACTTCTTTCCAGGCTCTGGGGCTCCTGAAGAGGTTGGCGGA GGGCCGGGTGTGGGGTACAATGTGAACGTGGCATGGACGGGAGGTGTGGACCCCCCCATC GGAGACGTGGAGTACCTAACGGCCTTCAGGACAGTGGTGATGCCCATCGCCCACGAGTTC TCACCTGACGTGGTCCTGGTTTCCGCCGGGTTTGATGCTGTTGAGGGACACTTGTCTCCG TTGGGTGGCTACTCTGTCACCGCCAGATGTTTTGGCCACTTGACCAGGCAGCTGATGACG CTGGCAGGGGGCCGGGTGGTGCTGGCCCTGGAGGGAGGCCATGACTTGACCGCCATCTGT GATGCCTCTGAGGCCTGTGTCTCAGCTCTGCTCAGCGTGGAGCTGCAGCCCTTGGACGAG GCAGTCCTGCAACAAAAGCCCAACATCAATGCAGTGGCCACGCTAGAGAAAGTCATCGGG ATCCAGAGCAAACACTGGAGCTGTGTGCAGAGGTTCGCTGCTGGTCTAGGCCGTTCCCTG CGGGAGGCCCAGGCAGGCGAGACAGAGGAGGCCGAGACTGTGAGCGCCATGGCCTTGCTG TCGGTGGGGGCCGAGCAGGCGCAGGCTGCTGCAGCCCGGGAGCACAGCCCCAGGCCGGCA GAGGAGCCCATGGAGCAGGAGCCTGCCCTGTGATGCCCTGGCCCCCGTCCCTCTGGGCTT CATCATTGTGATTTTGTTTATTTTTTCTATTAAAAAGAAAAAGTCACACAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGAGGAGGGCCCCGACTTGGAGGAGTCCAGTGCTGGTTACAAAAAGGTGTTTGCAGAT GCCCAGCAGCTGCAGCCGCTGCAGGTGTACCAGGCACCCCTCAGCCTGGCCACTGTGCCC CACCAGGCCCTGGGCCGCACCCAGTCCTCACCTGCTGCCCCAGGGGGCATGAAGAGCCCC CCAGACCAGCCCACCAAGCACCTCTTCACCACAGGTGTGGTCTACGACACGTTCATGCTG AAGCACCAGTGCATGTGCGGGAACACACACGTGCACCCGGAGCACGCTGGCCGGATTCAG AGCATCTGGTCCCGGCTGCAGGAAACAGGCCTGCTCAGCAAGTGTGAGCGGATTCGGGGT CGCAAAGCCACGCTGGACGAGATCCAGACGGTGCACTCCGAGTACCACACCCTGCTCTAT GGGACCAGCCCCCTCAACCGCCAGAAGCTGGACAGCAAGAAGCTGCTGGGCCCCATCAGC CAGAAGATGTATGCTGTGCTGCCCTGCGGGGGCATCGGGGTGGACAGCGACACAGTGTGG AATGAGATGCACTCCTCCAGTGCTGTGCGCATGGCGGTGGGCTGCCTGGTGGAGCTGGCA TTCAAGGTGGCTGCGGGGGAGCTCAAGAATGGATTTGCCATCATCCGGCCCCCAGGCCAC CACGCGGAGGAATCCACAGCCATGGGATTCTGCTTCTTCAACTCTGTAGCCATCACAACC AAACTTCTGCAGCAGAAGCTGAACGTGGGCAAGGTTCTCATCGTGGACTGGGACATACAC CACGGCAATGGCACCCAGCAAGCATTCTACAACGACCCCTCCGTGCTCTATATCTCTCTG CATCGCTATGACAATGGGAACTTCTTTCCAGGCTCTGGGGCTCCTGAAGAGGTTGGCGGA GGGCCGGGTGTGGGGTACAATGTGAACGTGGCATGGACGGGAGGTGTGGACCCCCCCATC GGAGACGTGGAGTACCTAACGGCCTTCAGGACAGTGGTGATGCCCATCGCCCACGAGTTC TCACCTGACGTGGTCCTGGTTTCCGCCGGGTTTGATGCTGTTGAGGGACACTTGTCTCCG TTGGGTGGCTACTCTGTCACCGCCAGATGTTTTGGCCACTTGACCAGGCAGCTGATGACG CTGGCAGGGGGCCGGGTGGTGCTGGCCCTGGAGGGAGGCCATGACTTGACCGCCATCTGT GATGCCTCTGAGGCCTGTGTCTCAGCTCTGCTCAGCGTGGAGCTGCAGCCCTTGGACGAG GCAGTCCTGCAACAAAAGCCCAACATCAATGCAGTGGCCACGCTAGAGAAAGTCATCGGG ATCCAGAGCAAACACTGGAGCTGTGTGCAGAGGTTCGCTGCTGGTCTAGGCCGTTCCCTG CGGGAGGCCCAGGCAGGCGAGACAGAGGAGGCCGAGACTGTGAGCGCCATGGCCTTGCTG TCGGTGGGGGCCGAGCAGGCGCAGGCTGCTGCAGCCCGGGAGCACAGCCCCAGGCCGGCA GAGGAGCCCATGGAGCAGGAGCCTGCCCTGTGATGCCCTGGCCCCCGTCCCTCTGGGCTT CATCATTGTGATTTTGTTTATTTTTTCTATTAAAAAGAAAAAGTCACACAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 86-1494, + strand, RNAz p=0.978938 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 86-1494, + strand, RNAz p=0.978938 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 47-217, gnl|bosTau2|chr19 (38193240-38193410) | |
| 47-217, gnl|Hg17|chr17 (39519633-39519463) | |
| 47-217, gnl|Mm7|chr11 (102310445-102310269) | |
| 347-470, gnl|bosTau2|chr19 (38194950-38195073) | |
| 347-470, gnl|canFam2|chr9 (22611806-22611714) | |
| 347-470, gnl|danRer3|chr3 (16632821-16632911) | |
| 347-470, gnl|dasNov1|scaffold_7935 (38035-37946) | |
| 347-470, gnl|echTel1|scaffold_185402 (6865-6771) | |
| 347-470, gnl|fr1|chrUn (36212975-36212907) | |
| 347-470, gnl|galGal2|chrUn (6475271-6475184) | |
| 347-470, gnl|hg17|chr17 (39517441-39517531) | |
| 347-470, gnl|Hg17|chr17 (39517571-39517448) | |
| 347-470, gnl|loxAfr1|scaffold_4197 (61461-61555) | |
| 347-470, gnl|mm7|chr11 (102308998-102309090) | |
| 347-470, gnl|Mm7|chr11 (102309130-102309007) | |
| 347-470, gnl|monDom2|scaffold_18 (42727279-42727193) | |
| 347-470, gnl|oryCun1|scaffold_203933 (48094-48011) | |
| 347-470, gnl|panTro1|chr19 (42703742-42703832) | |
| 347-470, gnl|rheMac2|chr16 (54167382-54167472) | |
| 347-470, gnl|rn3|chr10 (91286283-91286375) | |
| 347-470, gnl|tetNig1|chrUn_random (37724518-37724605) | |
| 347-470, gnl|xenTro1|scaffold_316 (813073-812985) | |
| 519-627, gnl|bosTau2|chr19 (38195720-38195828) | |
| 519-627, gnl|canFam2|chr9 (22612592-22612468) | |
| 519-627, gnl|danRer3|chr3 (16631067-16631185) | |
| 519-627, gnl|dasNov1|scaffold_22246 (22631-22508) | |
| 519-627, gnl|echTel1|scaffold_185402 (8553-8430) | |
| 519-627, gnl|fr1|chrUn (36213765-36213644) | |
| 519-627, gnl|galGal2|chrUn (6476797-6476674) | |
| 519-627, gnl|hg17|chr17 (39516438-39516561) | |
| 519-627, gnl|Hg17|chr17 (39516547-39516439) | |
| 519-627, gnl|loxAfr1|scaffold_56884 (7087-7204) | |
| 519-627, gnl|mm7|chr11 (102308404-102308527) | |
| 519-627, gnl|Mm7|chr11 (102308513-102308405) | |
| 519-627, gnl|monDom2|scaffold_18 (42727981-42727859) | |
| 519-627, gnl|oryCun1|scaffold_75722 (560-437) | |
| 519-627, gnl|panTro1|chr19 (42702726-42702849) | |
| 519-627, gnl|rheMac2|chr16 (54166360-54166483) | |
| 519-627, gnl|rn3|chr10 (91284632-91284755) | |
| 519-627, gnl|tetNig1|chrUn_random (37723936-37724056) | |
| 519-627, gnl|xenTro1|scaffold_316 (814193-814037) | |
| 767-893, gnl|bosTau2|chr19 (38197330-38197456) | |
| 767-893, gnl|canFam2|chr9 (22614573-22614471) | |
| 767-893, gnl|danRer3|chr3 (16626771-16626873) | |
| 767-893, gnl|echTel1|scaffold_127767 (554-452) | |
| 767-893, gnl|fr1|chrUn (243090133-243090031) | |
| 767-893, gnl|galGal2|chrUn (6477676-6477574) | |
| 767-893, gnl|hg17|chr17 (39513655-39513757) | |
| 767-893, gnl|Hg17|chr17 (39513780-39513655) | |
| 767-893, gnl|loxAfr1|scaffold_45419 (19325-19223) | |
| 767-893, gnl|mm7|chr11 (102306703-102306805) | |
| 767-893, gnl|Mm7|chr11 (102306829-102306703) | |
| 767-893, gnl|monDom2|scaffold_18 (42729373-42729271) | |
| 767-893, gnl|oryCun1|scaffold_198201 (91589-91487) | |
| 767-893, gnl|panTro1|chr19 (42699937-42700039) | |
| 767-893, gnl|rheMac2|chr16 (54163599-54163701) | |
| 767-893, gnl|rn3|chr10 (91282820-91282922) | |
| 767-893, gnl|tetNig1|chrUn_random (37723153-37723254) | |
| 767-893, gnl|xenTro1|scaffold_316 (815134-815033) | |
| 1109-1242, gnl|bosTau2|chr19 (38198754-38198887) | |
| 1109-1242, gnl|Hg17|chr17 (39512171-39512038) | |
| 1109-1242, gnl|Mm7|chr11 (102305711-102305578) | |
| 1321-1494, gnl|bosTau2|chr19 (38199391-38199565) | |
| 1321-1494, gnl|Hg17|chr17 (39511567-39511393) | |
| 1321-1494, gnl|Mm7|chr11 (102305165-102304990) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 47-217, gnl|bosTau2|chr19 (38193240-38193410) | |
| 47-217, gnl|Hg17|chr17 (39519633-39519463) | |
| 47-217, gnl|Mm7|chr11 (102310445-102310269) | |
| 347-470, gnl|bosTau2|chr19 (38194950-38195073) | |
| 347-470, gnl|canFam2|chr9 (22611806-22611714) | |
| 347-470, gnl|danRer3|chr3 (16632821-16632911) | |
| 347-470, gnl|dasNov1|scaffold_7935 (38035-37946) | |
| 347-470, gnl|echTel1|scaffold_185402 (6865-6771) | |
| 347-470, gnl|fr1|chrUn (36212975-36212907) | |
| 347-470, gnl|galGal2|chrUn (6475271-6475184) | |
| 347-470, gnl|hg17|chr17 (39517441-39517531) | |
| 347-470, gnl|Hg17|chr17 (39517571-39517448) | |
| 347-470, gnl|loxAfr1|scaffold_4197 (61461-61555) | |
| 347-470, gnl|mm7|chr11 (102308998-102309090) | |
| 347-470, gnl|Mm7|chr11 (102309130-102309007) | |
| 347-470, gnl|monDom2|scaffold_18 (42727279-42727193) | |
| 347-470, gnl|oryCun1|scaffold_203933 (48094-48011) | |
| 347-470, gnl|panTro1|chr19 (42703742-42703832) | |
| 347-470, gnl|rheMac2|chr16 (54167382-54167472) | |
| 347-470, gnl|rn3|chr10 (91286283-91286375) | |
| 347-470, gnl|tetNig1|chrUn_random (37724518-37724605) | |
| 347-470, gnl|xenTro1|scaffold_316 (813073-812985) | |
| 519-627, gnl|bosTau2|chr19 (38195720-38195828) | |
| 519-627, gnl|canFam2|chr9 (22612592-22612468) | |
| 519-627, gnl|danRer3|chr3 (16631067-16631185) | |
| 519-627, gnl|dasNov1|scaffold_22246 (22631-22508) | |
| 519-627, gnl|echTel1|scaffold_185402 (8553-8430) | |
| 519-627, gnl|fr1|chrUn (36213765-36213644) | |
| 519-627, gnl|galGal2|chrUn (6476797-6476674) | |
| 519-627, gnl|hg17|chr17 (39516438-39516561) | |
| 519-627, gnl|Hg17|chr17 (39516547-39516439) | |
| 519-627, gnl|loxAfr1|scaffold_56884 (7087-7204) | |
| 519-627, gnl|mm7|chr11 (102308404-102308527) | |
| 519-627, gnl|Mm7|chr11 (102308513-102308405) | |
| 519-627, gnl|monDom2|scaffold_18 (42727981-42727859) | |
| 519-627, gnl|oryCun1|scaffold_75722 (560-437) | |
| 519-627, gnl|panTro1|chr19 (42702726-42702849) | |
| 519-627, gnl|rheMac2|chr16 (54166360-54166483) | |
| 519-627, gnl|rn3|chr10 (91284632-91284755) | |
| 519-627, gnl|tetNig1|chrUn_random (37723936-37724056) | |
| 519-627, gnl|xenTro1|scaffold_316 (814193-814037) | |
| 767-893, gnl|bosTau2|chr19 (38197330-38197456) | |
| 767-893, gnl|canFam2|chr9 (22614573-22614471) | |
| 767-893, gnl|danRer3|chr3 (16626771-16626873) | |
| 767-893, gnl|echTel1|scaffold_127767 (554-452) | |
| 767-893, gnl|fr1|chrUn (243090133-243090031) | |
| 767-893, gnl|galGal2|chrUn (6477676-6477574) | |
| 767-893, gnl|hg17|chr17 (39513655-39513757) | |
| 767-893, gnl|Hg17|chr17 (39513780-39513655) | |
| 767-893, gnl|loxAfr1|scaffold_45419 (19325-19223) | |
| 767-893, gnl|mm7|chr11 (102306703-102306805) | |
| 767-893, gnl|Mm7|chr11 (102306829-102306703) | |
| 767-893, gnl|monDom2|scaffold_18 (42729373-42729271) | |
| 767-893, gnl|oryCun1|scaffold_198201 (91589-91487) | |
| 767-893, gnl|panTro1|chr19 (42699937-42700039) | |
| 767-893, gnl|rheMac2|chr16 (54163599-54163701) | |
| 767-893, gnl|rn3|chr10 (91282820-91282922) | |
| 767-893, gnl|tetNig1|chrUn_random (37723153-37723254) | |
| 767-893, gnl|xenTro1|scaffold_316 (815134-815033) | |
| 1109-1242, gnl|bosTau2|chr19 (38198754-38198887) | |
| 1109-1242, gnl|Hg17|chr17 (39512171-39512038) | |
| 1109-1242, gnl|Mm7|chr11 (102305711-102305578) | |
| 1321-1494, gnl|bosTau2|chr19 (38199391-38199565) | |
| 1321-1494, gnl|Hg17|chr17 (39511567-39511393) | |
| 1321-1494, gnl|Mm7|chr11 (102305165-102304990) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| amn (0.417711) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nms (0.213858) | |
| fcc (0.197785) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| cut (0.169924) | |
| cje (0.165235) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| ecc (0.115035) | |
| eje (0.0988338) |