Ss1.1-Pig4-TMW8019O11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTATGAAGATGAATCAGATGTTTCACTCTATGGAAGGAAAGGCAACCACATTGTGAATGA CGTTGGGATTAACGTTACTGGATCAGATTCCATTGCAGTAAAAGCTTCATTTGGTGTTGT AACCAAACATGAAGTGGAAGTATCAACACTACTCAAGGAAATTACTACCCGAAAAATTAA TTTTGACCACAGTTTGATACGTCAGTCAAGGAGCAGCAGAAAGGCAGTATTATGTGTGGT CATGGAAAGCATTCGAACCACACGACAGTGCTCTCTCTCTGTACATGCTGGAATTCGTGG GGAAGCCATGCGGTTTCATTTTATGGACGAACAGAATCCCAAGGGAAGGGACAAAGCTAT TGTTTTTCCAGCACACACAACCATAGCTTTCAGTGTTTTTGAACTCTTCATTTACCTGGA TGGTGCCTTTGACCTTTGTGTCACTTCAGTGTCAAAAGGAGGATTCGAAAGAGAAGAAAC AGCAACATTTGCACTCCTCTACAGATTGCGAAATATACTATTTGAAAGAAATAGAAGAGT GATGGATGCCATTTCTCGGTCACAGCTTTACTTAGATGATCTTTTTTCTGACTCCTATGA CAAACCTCTCAGCATGAGGGATATTTCACTCCAAGAAGGGACTCATATCCGAGTTAATTT ACTTAATCACAACATTCCAAAAGGACCTTGCATACTCTGTGGCATGGGGAACTTTAAAAG GGAGACGGTTTATGGGTGCTTTCAGTGCTCTGTCGATGGGCAGAAGTATGTGAGACTTCA TGCAGTTCCTTGTTTTGATGTTTGGCACAAGAGAATGAAATAAAATGGAAAATGAATGTA CCGTGCTATTTCAGGTGCAACTGTGCCACACACACAAAATTATTTGGGTTCACTTTGGTA AGTTGTGGCAAATTAAAGAGGGAAGGGAATGAGAAATTAACCTGTTTGGGCATCATTTTT CTCATCTATAAAGTGGAGGCAATAATAGTTTCTATCTCATAGATTTACTGAGGTTAATAA GGTTGCTTATATTGAAAAAGGTTTAGGAGTTCCTGTTGTGGCTCGGTGGTAACAAACCCA ACTAGTATCCCTGAGGATGCAGGTTCCGTCCCTTAACCCACTGAGCAAGGCCATGGATCA AACCTGCAACCTCACGGTTACTAGTCAGATTGTTTCCACTGTGCCATGATGGGAACTCCA AGAATGGACCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTATGAAGATGAATCAGATGTTTCACTCTATGGAAGGAAAGGCAACCACATTGTGAATGA CGTTGGGATTAACGTTACTGGATCAGATTCCATTGCAGTAAAAGCTTCATTTGGTGTTGT AACCAAACATGAAGTGGAAGTATCAACACTACTCAAGGAAATTACTACCCGAAAAATTAA TTTTGACCACAGTTTGATACGTCAGTCAAGGAGCAGCAGAAAGGCAGTATTATGTGTGGT CATGGAAAGCATTCGAACCACACGACAGTGCTCTCTCTCTGTACATGCTGGAATTCGTGG GGAAGCCATGCGGTTTCATTTTATGGACGAACAGAATCCCAAGGGAAGGGACAAAGCTAT TGTTTTTCCAGCACACACAACCATAGCTTTCAGTGTTTTTGAACTCTTCATTTACCTGGA TGGTGCCTTTGACCTTTGTGTCACTTCAGTGTCAAAAGGAGGATTCGAAAGAGAAGAAAC AGCAACATTTGCACTCCTCTACAGATTGCGAAATATACTATTTGAAAGAAATAGAAGAGT GATGGATGCCATTTCTCGGTCACAGCTTTACTTAGATGATCTTTTTTCTGACTCCTATGA CAAACCTCTCAGCATGAGGGATATTTCACTCCAAGAAGGGACTCATATCCGAGTTAATTT ACTTAATCACAACATTCCAAAAGGACCTTGCATACTCTGTGGCATGGGGAACTTTAAAAG GGAGACGGTTTATGGGTGCTTTCAGTGCTCTGTCGATGGGCAGAAGTATGTGAGACTTCA TGCAGTTCCTTGTTTTGATGTTTGGCACAAGAGAATGAAATAAAATGGAAAATGAATGTA CCGTGCTATTTCAGGTGCAACTGTGCCACACACACAAAATTATTTGGGTTCACTTTGGTA AGTTGTGGCAAATTAAAGAGGGAAGGGAATGAGAAATTAACCTGTTTGGGCATCATTTTT CTCATCTATAAAGTGGAGGCAATAATAGTTTCTATCTCATAGATTTACTGAGGTTAATAA GGTTGCTTATATTGAAAAAGGTTTAGGAGTTCCTGTTGTGGCTCGGTGGTAACAAACCCA ACTAGTATCCCTGAGGATGCAGGTTCCGTCCCTTAACCCACTGAGCAAGGCCATGGATCA AACCTGCAACCTCACGGTTACTAGTCAGATTGTTTCCACTGTGCCATGATGGGAACTCCA AGAATGGACCGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-159, + strand, RNAz p=0.840555 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-159, + strand, RNAz p=0.840555 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-171, gnl|bosTau2|chr2 (7975388-7975218) | |
| 1-171, gnl|Hg17|chr2 (179144591-179144761) | |
| 1-171, gnl|Mm7|chr2 (76495139-76495309) | |
| 313-431, gnl|bosTau2|chr2 (7973474-7973356) | |
| 313-431, gnl|canFam2|chr36 (25112825-25112988) | |
| 313-431, gnl|danRer3|chr6 (7023190-7023046) | |
| 313-431, gnl|dasNov1|scaffold_39542 (368-202) | |
| 313-431, gnl|echTel1|scaffold_317123 (436926-436764) | |
| 313-431, gnl|fr1|chrUn (128204417-128204543) | |
| 313-431, gnl|galGal2|chr7 (16212426-16212292) | |
| 313-431, gnl|hg17|chr2 (179148740-179148904) | |
| 313-431, gnl|Hg17|chr2 (179148743-179148861) | |
| 313-431, gnl|loxAfr1|scaffold_131097 (4170-4334) | |
| 313-431, gnl|mm7|chr2 (76499519-76499684) | |
| 313-431, gnl|Mm7|chr2 (76499522-76499640) | |
| 313-431, gnl|monDom2|scaffold_2 (79300623-79300786) | |
| 313-431, gnl|oryCun1|scaffold_203270 (76707-76547) | |
| 313-431, gnl|panTro1|chr13 (68934641-68934805) | |
| 313-431, gnl|rheMac2|chr12 (42110385-42110549) | |
| 313-431, gnl|rn3|chr3 (59250619-59250779) | |
| 313-431, gnl|tetNig1|chr3 (97494-97606) | |
| 313-431, gnl|xenTro1|scaffold_546 (256478-256636) | |
| 531-1043, gnl|bosTau2|chr2 (7970438-7969917) | |
| 531-1043, gnl|Hg17|chr2 (179151216-179151737) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-171, gnl|bosTau2|chr2 (7975388-7975218) | |
| 1-171, gnl|Hg17|chr2 (179144591-179144761) | |
| 1-171, gnl|Mm7|chr2 (76495139-76495309) | |
| 313-431, gnl|bosTau2|chr2 (7973474-7973356) | |
| 313-431, gnl|canFam2|chr36 (25112825-25112988) | |
| 313-431, gnl|danRer3|chr6 (7023190-7023046) | |
| 313-431, gnl|dasNov1|scaffold_39542 (368-202) | |
| 313-431, gnl|echTel1|scaffold_317123 (436926-436764) | |
| 313-431, gnl|fr1|chrUn (128204417-128204543) | |
| 313-431, gnl|galGal2|chr7 (16212426-16212292) | |
| 313-431, gnl|hg17|chr2 (179148740-179148904) | |
| 313-431, gnl|Hg17|chr2 (179148743-179148861) | |
| 313-431, gnl|loxAfr1|scaffold_131097 (4170-4334) | |
| 313-431, gnl|mm7|chr2 (76499519-76499684) | |
| 313-431, gnl|Mm7|chr2 (76499522-76499640) | |
| 313-431, gnl|monDom2|scaffold_2 (79300623-79300786) | |
| 313-431, gnl|oryCun1|scaffold_203270 (76707-76547) | |
| 313-431, gnl|panTro1|chr13 (68934641-68934805) | |
| 313-431, gnl|rheMac2|chr12 (42110385-42110549) | |
| 313-431, gnl|rn3|chr3 (59250619-59250779) | |
| 313-431, gnl|tetNig1|chr3 (97494-97606) | |
| 313-431, gnl|xenTro1|scaffold_546 (256478-256636) | |
| 531-1043, gnl|bosTau2|chr2 (7970438-7969917) | |
| 531-1043, gnl|Hg17|chr2 (179151216-179151737) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) |