Non-Coding RNA Search

Ss1.1-Pig4-TMW8019O15.5

Sequence:


               
               TTTTTTGCCAACCATTGCCAATGTCAATCAATCACAGTATTAGCCTCTGTTAATCTCTTA
CTGCTTCCACATACACTCTTCAACGCCTATGTTGCTCAAAGGTGGCAAGTTGTCCTGGGT
TCTGTGAGTCCCACGATGGATTTAATTCTTGATGCTGGTGCTAGAAGTAGGTCTTCAAAT
ACGGGATCGTTGTCCCACCCTGTACTGTACTCCTAGTGGCCAAACTTATTTATGCTGCTA
CATGAAAGAAAGAAAAAAAAAGCAAATTATTTTTTTTTATTTTTTTTCTGCTGTGACGTT
TTAGTCCCAGACTGAATTCCAAATTTGCTCTAGTTTGGTTACGGAAAAAAAAAAAAAAAA
AGACTTTTTGCCACTGAAACTTGAACCATCTGTGCCTCTAAGAGGCTGAGCATGGGAGAG
TTTCAGAAAATAAAGAGTGGAGTTTGCCTGCAAGTAAAGAATCGAGAGTGTGTGCAAAGC
TTATTTTCTTTTATCTAGGCAAAAATTAAAACACATTCCTTGGAACAGAGCTGTTGCCGC
CTGTTCTGCGGAGAAACTTCTTTTTTGAGGGCTTGTGGTGAATGGATGAACGTACACGAT
GAAACTGACAACATATTTTAAAAAAAGATATAAAACACAAAATGAAAATAAAGTTGCTGG
TCAGTCTTAGTGTTTTACAGTATTGGGGAAAACAACTGTTACAGTTTTATTGCTCTGAGT
AACTGACAAAGCAGAAACTATCCAGTTTTTGTAGTAAAGGCGTCACAAGCAAACAAGCGA
AATGAATGAAAGAGATGGTTTGCCTCATTCTCCAAGAGCCACAACTCAAGCTGAACTGTG
AAAGTGGTTTAACACTGTATCTTAGGTGATCTTTTTTTTTTTCCTCCTCCTGTTTATTTT
TTTGTTTGTTTTATTTATAGTCTGATTTTAAAACAATCAGATTCAAGATGGTTAATTTTA
GTTATGTAACAACCTGACATGATGGAGGAAACCAACCTTTAAAGGGATTGTGTCCATGGT
TTGATTCACTTAGAAATTTTATTTTCTTATAACTTAAGTGCAATAAAATGTGTTTTTTCA
TGTTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTGCCAACCATTGCCAATGTCAATCAATCACAGTATTAGCCTCTGTTAATCTCTTA
CTGCTTCCACATACACTCTTCAACGCCTATGTTGCTCAAAGGTGGCAAGTTGTCCTGGGT
TCTGTGAGTCCCACGATGGATTTAATTCTTGATGCTGGTGCTAGAAGTAGGTCTTCAAAT
ACGGGATCGTTGTCCCACCCTGTACTGTACTCCTAGTGGCCAAACTTATTTATGCTGCTA
CATGAAAGAAAGAAAAAAAAAGCAAATTATTTTTTTTTATTTTTTTTCTGCTGTGACGTT
TTAGTCCCAGACTGAATTCCAAATTTGCTCTAGTTTGGTTACGGAAAAAAAAAAAAAAAA
AGACTTTTTGCCACTGAAACTTGAACCATCTGTGCCTCTAAGAGGCTGAGCATGGGAGAG
TTTCAGAAAATAAAGAGTGGAGTTTGCCTGCAAGTAAAGAATCGAGAGTGTGTGCAAAGC
TTATTTTCTTTTATCTAGGCAAAAATTAAAACACATTCCTTGGAACAGAGCTGTTGCCGC
CTGTTCTGCGGAGAAACTTCTTTTTTGAGGGCTTGTGGTGAATGGATGAACGTACACGAT
GAAACTGACAACATATTTTAAAAAAAGATATAAAACACAAAATGAAAATAAAGTTGCTGG
TCAGTCTTAGTGTTTTACAGTATTGGGGAAAACAACTGTTACAGTTTTATTGCTCTGAGT
AACTGACAAAGCAGAAACTATCCAGTTTTTGTAGTAAAGGCGTCACAAGCAAACAAGCGA
AATGAATGAAAGAGATGGTTTGCCTCATTCTCCAAGAGCCACAACTCAAGCTGAACTGTG
AAAGTGGTTTAACACTGTATCTTAGGTGATCTTTTTTTTTTTCCTCCTCCTGTTTATTTT
TTTGTTTGTTTTATTTATAGTCTGATTTTAAAACAATCAGATTCAAGATGGTTAATTTTA
GTTATGTAACAACCTGACATGATGGAGGAAACCAACCTTTAAAGGGATTGTGTCCATGGT
TTGATTCACTTAGAAATTTTATTTTCTTATAACTTAAGTGCAATAAAATGTGTTTTTTCA
TGTTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3929926|dbj|BAA34715.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3929926|dbj|BAA34715.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-114, - strand, RNAz p=0.744167
               

               
               234-472, - strand, RNAz p=0.998623
               

               
               901-1020, + strand, RNAz p=0.804391

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-114, - strand, RNAz p=0.744167
               

               
               234-472, - strand, RNAz p=0.998623
               

               
               901-1020, + strand, RNAz p=0.804391

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_033632, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_033632, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1085, gnl|bosTau2|chr17 (845490-846570)
               

               
               1-1085, gnl|Hg17|chr4 (153601088-153600015)
               

               
               1-1085, gnl|Mm7|chr3 (85090976-85092049)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1085, gnl|bosTau2|chr17 (845490-846570)
               

               
               1-1085, gnl|Hg17|chr4 (153601088-153600015)
               

               
               1-1085, gnl|Mm7|chr3 (85090976-85092049)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               fco (0.471624)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               tra (0.246184)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               thg (0.126791)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-114, - strand, RNAz p=0.744167
	234-472, - strand, RNAz p=0.998623
	901-1020, + strand, RNAz p=0.804391

	1-1085, gnl\|bosTau2\|chr17 (845490-846570)
	1-1085, gnl\|Hg17\|chr4 (153601088-153600015)
	1-1085, gnl\|Mm7\|chr3 (85090976-85092049)

	fco (0.471624)
	tra (0.246184)
	pgl (0.236967)
	mgp (0.230681)
	tes (0.207814)
	fcc (0.197785)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	thg (0.126791)
	med (0.116252)
	spc (0.113366)
	ldo (0.0970026)