Non-Coding RNA Search

Ss1.1-Pig4-TMW8019O17.3

Sequence:


               
               AGACTCCAGCCAGCGGTGGGAGTCCCCATCACTGAGCCTAAAGACAGCTGCCCTCGAGGG
GTCACTGGGTGGGAGCCTCCTCAGGTTCACCCTGCAACTTGCACACAGGCCGTCAAGCAG
GAAACAGGTGTCCCCCCAGGGCTGTGAGCTCTGTGGGACCCCGGGATGCCCAGCCCAGCG
GCCCTCTCGCCTTCCACATCAGCTGAATGAAACCAAGGTGAGACTCACGACTTGCTCTGG
GTCACACCACCCAGCAGTGGCAGCAATGGCCCTATGCCCCTGCCCCACTTTAGAGGGGAT
GCCATCTGGCCCCTCCTCCTTGCTTCCCTCCCACCCCCCCGCCCCAGCCTTACTCCACAC
CACGCGACAATCATTTTGTACAGATAGCAGGAGCGACGCTGTAAGGTTTTGTACATCGGT
GATTTGTTACCTAGAAAACCCACCACGGCTCCAGATTTCTGGCATATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTCCAGCCAGCGGTGGGAGTCCCCATCACTGAGCCTAAAGACAGCTGCCCTCGAGGG
GTCACTGGGTGGGAGCCTCCTCAGGTTCACCCTGCAACTTGCACACAGGCCGTCAAGCAG
GAAACAGGTGTCCCCCCAGGGCTGTGAGCTCTGTGGGACCCCGGGATGCCCAGCCCAGCG
GCCCTCTCGCCTTCCACATCAGCTGAATGAAACCAAGGTGAGACTCACGACTTGCTCTGG
GTCACACCACCCAGCAGTGGCAGCAATGGCCCTATGCCCCTGCCCCACTTTAGAGGGGAT
GCCATCTGGCCCCTCCTCCTTGCTTCCCTCCCACCCCCCCGCCCCAGCCTTACTCCACAC
CACGCGACAATCATTTTGTACAGATAGCAGGAGCGACGCTGTAAGGTTTTGTACATCGGT
GATTTGTTACCTAGAAAACCCACCACGGCTCCAGATTTCTGGCATATT

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               2-151, gnl|bosTau2|chr17 (37743726-37743586)
               


               
               195-468, gnl|bosTau2|chr17 (37743567-37743295)
               

               
               195-468, gnl|Hg17|chr12 (112198838-112199085)
               

               
               195-468, gnl|Mm7|chr5 (119768506-119768166)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-151, gnl|bosTau2|chr17 (37743726-37743586)
               


               
               195-468, gnl|bosTau2|chr17 (37743567-37743295)
               

               
               195-468, gnl|Hg17|chr12 (112198838-112199085)
               

               
               195-468, gnl|Mm7|chr5 (119768506-119768166)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               fbs (0.175346)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               nmm (0.132802)
               

               
               med (0.116252)

	2-151, gnl\|bosTau2\|chr17 (37743726-37743586)

	195-468, gnl\|bosTau2\|chr17 (37743567-37743295)
	195-468, gnl\|Hg17\|chr12 (112198838-112199085)
	195-468, gnl\|Mm7\|chr5 (119768506-119768166)