Non-Coding RNA Search

Ss1.1-Pig4-TMW8020A01.5

Sequence:


               
               CCCCGGTCTCCCAGCCTGATGCCTCTGGCCACCAAAAGAAAGTGGTGTCATGGATAGACG
TATATGCTCGTGCCACTTGCCAGCCGCGGGAGGTAGTGGTGCCTCTGACCATGGAGCTCA
TGGGCACTGTAGCCAAGCAACTGGTGCCCAGCTGCGTGACTGTGCAGCGCTGTGGTGGCT
GCTGCCCTGACGACGGCCTGGAGTGTGTGCCCACTGGGCAGCACCAGGTCCGAATGCAGA
TCCTGATGATCCGGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCC
AGTGTGAATGCAGACCAAAAAAACGAGAGAGTGCCGTGAAGCCAGACAGCCCCAGGCCCC
TCTGCCCACGCTGCCCCCAGCGCCGCCAGCGCCCTGACCCCTGGACCTGCCGCTGCCGCT
GCCGACGCCGCAGCTTCCTCCGTTGTCAAGGGCGGGGCTTAGAGCTCAACCCAGACACCT
GCAGGTGCCGGAAGCTGCGAAGGTGACACATTGCTTCTCAGACTCAGTGGGGCCACTTGC
CTCACAGCCCCTGCCCCCTGACCCCCAGGGTATAGGGGCCACAAGGGCAGTCTGGTGAGA
AGAGTCCAGTCCCCAAGACCTCAGCCTGGGCAGAAGCTCCTCTCGGACCCGGGCCTTTCA
GAGGGCTTTCTGACCGCCTCGTGTCTCTCTGAAGCTGCCGTCCAACAACACGGGCAGCGC
TGGATGAAGAGACTTGAGGGCAGCAAGAGGGATCGCCTATCAACTTGAGAGACAATGGGG
GCCCGTCTCAGTTTTTAACCACCTTGTGCCAGTTGGCATCTAACAACTGGCTCCTCCGTC
CCCTCACTAAGAAGACCCTGATCCCCTGCAAAATAATGGGAGTTGGGCTTCGGTACAAGA
ACTGTGAACCCCAGTCCTGATAAAAGAGATGGAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGGTCTCCCAGCCTGATGCCTCTGGCCACCAAAAGAAAGTGGTGTCATGGATAGACG
TATATGCTCGTGCCACTTGCCAGCCGCGGGAGGTAGTGGTGCCTCTGACCATGGAGCTCA
TGGGCACTGTAGCCAAGCAACTGGTGCCCAGCTGCGTGACTGTGCAGCGCTGTGGTGGCT
GCTGCCCTGACGACGGCCTGGAGTGTGTGCCCACTGGGCAGCACCAGGTCCGAATGCAGA
TCCTGATGATCCGGTACCCAAGCAGTCAGCTGGGGGAGATGTCCCTGGAAGAACACAGCC
AGTGTGAATGCAGACCAAAAAAACGAGAGAGTGCCGTGAAGCCAGACAGCCCCAGGCCCC
TCTGCCCACGCTGCCCCCAGCGCCGCCAGCGCCCTGACCCCTGGACCTGCCGCTGCCGCT
GCCGACGCCGCAGCTTCCTCCGTTGTCAAGGGCGGGGCTTAGAGCTCAACCCAGACACCT
GCAGGTGCCGGAAGCTGCGAAGGTGACACATTGCTTCTCAGACTCAGTGGGGCCACTTGC
CTCACAGCCCCTGCCCCCTGACCCCCAGGGTATAGGGGCCACAAGGGCAGTCTGGTGAGA
AGAGTCCAGTCCCCAAGACCTCAGCCTGGGCAGAAGCTCCTCTCGGACCCGGGCCTTTCA
GAGGGCTTTCTGACCGCCTCGTGTCTCTCTGAAGCTGCCGTCCAACAACACGGGCAGCGC
TGGATGAAGAGACTTGAGGGCAGCAAGAGGGATCGCCTATCAACTTGAGAGACAATGGGG
GCCCGTCTCAGTTTTTAACCACCTTGTGCCAGTTGGCATCTAACAACTGGCTCCTCCGTC
CCCTCACTAAGAAGACCCTGATCCCCTGCAAAATAATGGGAGTTGGGCTTCGGTACAAGA
ACTGTGAACCCCAGTCCTGATAAAAGAGATGGAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11095134|gb|AAG29746.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11095134|gb|AAG29746.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               41-239, + strand, RNAz p=0.997446
               

               
               640-759, + strand, RNAz p=0.838821

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-239, + strand, RNAz p=0.997446
               

               
               640-759, + strand, RNAz p=0.838821

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003377, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003377, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               41-239, gnl|bosTau2|chr29 (33354936-33355134)
               

               
               41-239, gnl|Hg17|chr11 (63759859-63760057)
               

               
               41-239, gnl|Mm7|chr19 (6806352-6806154)
               


               
               482-936, gnl|bosTau2|chr29 (33356674-33357104)
               

               
               482-936, gnl|Hg17|chr11 (63762401-63762834)
               

               
               482-936, gnl|Mm7|chr19 (6802734-6802341)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               41-239, gnl|bosTau2|chr29 (33354936-33355134)
               

               
               41-239, gnl|Hg17|chr11 (63759859-63760057)
               

               
               41-239, gnl|Mm7|chr19 (6806352-6806154)
               


               
               482-936, gnl|bosTau2|chr29 (33356674-33357104)
               

               
               482-936, gnl|Hg17|chr11 (63762401-63762834)
               

               
               482-936, gnl|Mm7|chr19 (6802734-6802341)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               nms (0.427716)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               mas (0.42061)
               

               
               hlv (0.417769)
               

               
               hyp (0.285673)
               

               
               cga (0.279096)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	41-239, + strand, RNAz p=0.997446
	640-759, + strand, RNAz p=0.838821

	41-239, gnl\|bosTau2\|chr29 (33354936-33355134)
	41-239, gnl\|Hg17\|chr11 (63759859-63760057)
	41-239, gnl\|Mm7\|chr19 (6806352-6806154)

	482-936, gnl\|bosTau2\|chr29 (33356674-33357104)
	482-936, gnl\|Hg17\|chr11 (63762401-63762834)
	482-936, gnl\|Mm7\|chr19 (6802734-6802341)

	nms (0.427716)
	mas (0.42061)
	hlv (0.417769)
	hyp (0.285673)
	cga (0.279096)
	ese (0.253004)
	eep (0.245128)
	cly (0.241284)
	ece (0.229305)
	jca (0.22792)
	nep (0.183925)
	fbs (0.175346)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)
	ldo (0.0970026)