Ss1.1-Pig4-TMW8020A18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATCCACGACTCTCGAGGTAATGCTGAAAGGAGTAACAAGGCTCATCTCCAGGGTCCATA AGTTGGACCCTGGACATGTTTTGTATATGGGGACCCAGGCACCCCAAAGCCTTGCTGCTC ATCTGGATAACCAGGTTCCAGTTAAGAGTCCCAGAGCTATTTCTCGCACCAGTGAGGATG ATCCGGCCAAGCATAGGGAGCAGCACGAGGGTCAGCACTACAACATATCCCTCCAGGAGC TGAAGACTGTCTTCCCCCATGGCCTGCCTCCTCGCTTTGCAATGCAGGTGAAGACATTCA ATGAAGCTTGCCTGATGGTAAGAAAACCAGCCCTAGAGCTTCTGCACTACCTAAAAAACA CCAATTTTGCTCATCCAGCTGTACGATATGTTCTCTATGGTGAGAAGGGAACAGGAAAAA CTCTCAGTCTTTGCCATATTCTTCATTTCTGTGCAAAACAGAACTGGCTGATACTGCATA TTCCAGATGCTCATATTTGGGTCAAAAACTGCCGGGATCTACTGCAGTCCAACTACAACA AACAGCGCTTTGATCAACCTTTAGAGGCTTCAACCTGGCTGAAGAATTTCAAAACTGCAA ATGAACATTTCTTGAGTCAGATAAAAGTTCAAGAGAAGTACGTCTGGAATAAGCGAGAAA GCACTGAGAAGGGCCGTCCTCTGGGAGAAGTAGTGGAACAGGGCATAATGCGAGTGAGGA ATGCCACAGATGCAGTTGGAATTGTGCTCAAAGAGCTTAAAAGGCAAAGTTCTTTGGGTA TTTTTCACCTCCTGGTGGCAGTGGATGGGGTCAATGCTCTCTGGGGAAGGACCACGCTGA AGAGAGAAGATAAAAGCCCAATTGCCCCAGAAGAGCTAGCGCTTATTCACAACCTGAGGA AAATGGTGAAAAATGACTGGCAAGGAGGTGCCATTGTGTTGACTGTGAGCCAGACTGGTT CTCTCTTTAAGCCACGGAATGCTTATCTGCCCCAGGAGTTGCTGGGAAAGGAAGGATTTG ACGCTCTGGATCCCTTTATTCCCATCCTGGTTTCCAACTACAACCCAAAGGAATTTGAAA GTTGTATTCAGTATTATTTGGAGAATAACTGGCTTCAACATGAAAAAGCTCATACTGAAG AAGGGAAAAAGGAGCTGCTGTTCTTAAGTAATAGGAATCCCGGGCAGCTGGAGCGGCTCT GTGCCTACCTCTAAGCCATGGTCACAACGTGCCTGGAAGACACCAGAGCTTTCTTTCAAT GGACACCCAGGCAGATGGGGGAGTCCCACCGTACATGAGAAGAGCAGCCAGGTGCCTGCG CTTACGGACCTGCAGTGGACGGGCCTGCAGTCAGCTGCCCACCTTTGTTGAAACAGATTC CTTGTGAAGTGACTGTGATGGTAATAAGATGTCCTATTGTTCCTGAAACTAACACCAGTT TATCAGATGTGGTTTTCACATTTTAAATAATCACGTAGCTTTTCCTAAAAAATTAAATTA AGTATTTTTCTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATCCACGACTCTCGAGGTAATGCTGAAAGGAGTAACAAGGCTCATCTCCAGGGTCCATA AGTTGGACCCTGGACATGTTTTGTATATGGGGACCCAGGCACCCCAAAGCCTTGCTGCTC ATCTGGATAACCAGGTTCCAGTTAAGAGTCCCAGAGCTATTTCTCGCACCAGTGAGGATG ATCCGGCCAAGCATAGGGAGCAGCACGAGGGTCAGCACTACAACATATCCCTCCAGGAGC TGAAGACTGTCTTCCCCCATGGCCTGCCTCCTCGCTTTGCAATGCAGGTGAAGACATTCA ATGAAGCTTGCCTGATGGTAAGAAAACCAGCCCTAGAGCTTCTGCACTACCTAAAAAACA CCAATTTTGCTCATCCAGCTGTACGATATGTTCTCTATGGTGAGAAGGGAACAGGAAAAA CTCTCAGTCTTTGCCATATTCTTCATTTCTGTGCAAAACAGAACTGGCTGATACTGCATA TTCCAGATGCTCATATTTGGGTCAAAAACTGCCGGGATCTACTGCAGTCCAACTACAACA AACAGCGCTTTGATCAACCTTTAGAGGCTTCAACCTGGCTGAAGAATTTCAAAACTGCAA ATGAACATTTCTTGAGTCAGATAAAAGTTCAAGAGAAGTACGTCTGGAATAAGCGAGAAA GCACTGAGAAGGGCCGTCCTCTGGGAGAAGTAGTGGAACAGGGCATAATGCGAGTGAGGA ATGCCACAGATGCAGTTGGAATTGTGCTCAAAGAGCTTAAAAGGCAAAGTTCTTTGGGTA TTTTTCACCTCCTGGTGGCAGTGGATGGGGTCAATGCTCTCTGGGGAAGGACCACGCTGA AGAGAGAAGATAAAAGCCCAATTGCCCCAGAAGAGCTAGCGCTTATTCACAACCTGAGGA AAATGGTGAAAAATGACTGGCAAGGAGGTGCCATTGTGTTGACTGTGAGCCAGACTGGTT CTCTCTTTAAGCCACGGAATGCTTATCTGCCCCAGGAGTTGCTGGGAAAGGAAGGATTTG ACGCTCTGGATCCCTTTATTCCCATCCTGGTTTCCAACTACAACCCAAAGGAATTTGAAA GTTGTATTCAGTATTATTTGGAGAATAACTGGCTTCAACATGAAAAAGCTCATACTGAAG AAGGGAAAAAGGAGCTGCTGTTCTTAAGTAATAGGAATCCCGGGCAGCTGGAGCGGCTCT GTGCCTACCTCTAAGCCATGGTCACAACGTGCCTGGAAGACACCAGAGCTTTCTTTCAAT GGACACCCAGGCAGATGGGGGAGTCCCACCGTACATGAGAAGAGCAGCCAGGTGCCTGCG CTTACGGACCTGCAGTGGACGGGCCTGCAGTCAGCTGCCCACCTTTGTTGAAACAGATTC CTTGTGAAGTGACTGTGATGGTAATAAGATGTCCTATTGTTCCTGAAACTAACACCAGTT TATCAGATGTGGTTTTCACATTTTAAATAATCACGTAGCTTTTCCTAAAAAATTAAATTA AGTATTTTTCTTAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 61-186, gnl|bosTau2|chr3 (13433154-13433029) | |
| 61-186, gnl|canFam2|chr7 (44996938-44996825) | |
| 61-186, gnl|dasNov1|scaffold_11626 (43227-43352) | |
| 61-186, gnl|echTel1|scaffold_280855 (95361-95236) | |
| 61-186, gnl|galGal2|chrE26C13 (80909-81035) | |
| 61-186, gnl|hg17|chr1 (152499859-152499984) | |
| 61-186, gnl|Hg17|chr1 (152499868-152499993) | |
| 61-186, gnl|loxAfr1|scaffold_16376 (31955-31830) | |
| 61-186, gnl|mm7|chr3 (89050067-89049960) | |
| 61-186, gnl|Mm7|chr3 (89050056-89049949) | |
| 61-186, gnl|monDom2|scaffold_59 (1975021-1974896) | |
| 61-186, gnl|oryCun1|scaffold_157396 (405-510) | |
| 61-186, gnl|panTro1|chr1_random (25211885-25211760) | |
| 61-186, gnl|rheMac2|chr1 (134289633-134289758) | |
| 61-186, gnl|rn3|chr2 (180951035-180950928) | |
| 286-396, gnl|bosTau2|chr3 (13429738-13429628) | |
| 286-396, gnl|canFam2|chr7 (44992647-44992508) | |
| 286-396, gnl|dasNov1|scaffold_11626 (46614-46754) | |
| 286-396, gnl|echTel1|scaffold_280855 (91682-91539) | |
| 286-396, gnl|fr1|chrUn (185472400-185472279) | |
| 286-396, gnl|galGal2|chrE26C13 (82867-83001) | |
| 286-396, gnl|hg17|chr1 (152508243-152508383) | |
| 286-396, gnl|Hg17|chr1 (152508244-152508354) | |
| 286-396, gnl|loxAfr1|scaffold_101058 (137-277) | |
| 286-396, gnl|mm7|chr3 (89044825-89044708) | |
| 286-396, gnl|Mm7|chr3 (89044823-89044713) | |
| 286-396, gnl|monDom2|scaffold_59 (1970340-1970210) | |
| 286-396, gnl|oryCun1|scaffold_157396 (614-730) | |
| 286-396, gnl|panTro1|chr1_random (25203510-25203370) | |
| 286-396, gnl|rheMac2|chr1 (134298782-134298922) | |
| 286-396, gnl|rn3|chr2 (180946392-180946254) | |
| 286-396, gnl|tetNig1|chr8 (8052513-8052635) | |
| 489-620, gnl|bosTau2|chr3 (13428353-13428222) | |
| 489-620, gnl|canFam2|chr7 (44990854-44990722) | |
| 489-620, gnl|dasNov1|scaffold_11626 (48049-48185) | |
| 489-620, gnl|echTel1|scaffold_280855 (90675-90549) | |
| 489-620, gnl|galGal2|chrE26C13 (83724-83867) | |
| 489-620, gnl|hg17|chr1 (152384919-152385062) | |
| 489-620, gnl|Hg17|chr1 (152510471-152510602) | |
| 489-620, gnl|loxAfr1|scaffold_101058 (1178-1302) | |
| 489-620, gnl|mm7|chr3 (89043345-89043212) | |
| 489-620, gnl|Mm7|chr3 (89043328-89043197) | |
| 489-620, gnl|monDom2|scaffold_59 (1969203-1969060) | |
| 489-620, gnl|oryCun1|scaffold_116737 (5216-5348) | |
| 489-620, gnl|panTro1|chr1 (134380939-134381082) | |
| 489-620, gnl|rheMac2|chr1 (134172621-134172764) | |
| 489-620, gnl|rn3|chr2 (180944406-180944274) | |
| 489-620, gnl|tetNig1|chr8 (8052849-8052987) | |
| 699-859, gnl|bosTau2|chr3 (13427371-13427211) | |
| 699-859, gnl|canFam2|chr7 (44989514-44989299) | |
| 699-859, gnl|dasNov1|scaffold_11626 (49018-49234) | |
| 699-859, gnl|echTel1|scaffold_280855 (89798-89571) | |
| 699-859, gnl|fr1|chrUn (185470881-185470677) | |
| 699-859, gnl|galGal2|chrE26C13 (84357-84596) | |
| 699-859, gnl|hg17|chr1 (152512033-152512247) | |
| 699-859, gnl|Hg17|chr1 (152512069-152512229) | |
| 699-859, gnl|loxAfr1|scaffold_16376 (23289-23068) | |
| 699-859, gnl|mm7|chr3 (89042202-89041996) | |
| 699-859, gnl|Mm7|chr3 (89042171-89042011) | |
| 699-859, gnl|monDom2|scaffold_59 (1968423-1968212) | |
| 699-859, gnl|oryCun1|scaffold_116737 (6200-6408) | |
| 699-859, gnl|panTro1|chr1 (134390163-134390377) | |
| 699-859, gnl|rheMac2|chr1 (134302562-134302776) | |
| 699-859, gnl|rn3|chr2 (180943220-180943017) | |
| 699-859, gnl|tetNig1|chr8 (8053818-8054017) | |
| 1127-1515, gnl|bosTau2|chr3 (13421306-13420945) | |
| 1127-1515, gnl|Hg17|chr1 (152521019-152521393) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 61-186, gnl|bosTau2|chr3 (13433154-13433029) | |
| 61-186, gnl|canFam2|chr7 (44996938-44996825) | |
| 61-186, gnl|dasNov1|scaffold_11626 (43227-43352) | |
| 61-186, gnl|echTel1|scaffold_280855 (95361-95236) | |
| 61-186, gnl|galGal2|chrE26C13 (80909-81035) | |
| 61-186, gnl|hg17|chr1 (152499859-152499984) | |
| 61-186, gnl|Hg17|chr1 (152499868-152499993) | |
| 61-186, gnl|loxAfr1|scaffold_16376 (31955-31830) | |
| 61-186, gnl|mm7|chr3 (89050067-89049960) | |
| 61-186, gnl|Mm7|chr3 (89050056-89049949) | |
| 61-186, gnl|monDom2|scaffold_59 (1975021-1974896) | |
| 61-186, gnl|oryCun1|scaffold_157396 (405-510) | |
| 61-186, gnl|panTro1|chr1_random (25211885-25211760) | |
| 61-186, gnl|rheMac2|chr1 (134289633-134289758) | |
| 61-186, gnl|rn3|chr2 (180951035-180950928) | |
| 286-396, gnl|bosTau2|chr3 (13429738-13429628) | |
| 286-396, gnl|canFam2|chr7 (44992647-44992508) | |
| 286-396, gnl|dasNov1|scaffold_11626 (46614-46754) | |
| 286-396, gnl|echTel1|scaffold_280855 (91682-91539) | |
| 286-396, gnl|fr1|chrUn (185472400-185472279) | |
| 286-396, gnl|galGal2|chrE26C13 (82867-83001) | |
| 286-396, gnl|hg17|chr1 (152508243-152508383) | |
| 286-396, gnl|Hg17|chr1 (152508244-152508354) | |
| 286-396, gnl|loxAfr1|scaffold_101058 (137-277) | |
| 286-396, gnl|mm7|chr3 (89044825-89044708) | |
| 286-396, gnl|Mm7|chr3 (89044823-89044713) | |
| 286-396, gnl|monDom2|scaffold_59 (1970340-1970210) | |
| 286-396, gnl|oryCun1|scaffold_157396 (614-730) | |
| 286-396, gnl|panTro1|chr1_random (25203510-25203370) | |
| 286-396, gnl|rheMac2|chr1 (134298782-134298922) | |
| 286-396, gnl|rn3|chr2 (180946392-180946254) | |
| 286-396, gnl|tetNig1|chr8 (8052513-8052635) | |
| 489-620, gnl|bosTau2|chr3 (13428353-13428222) | |
| 489-620, gnl|canFam2|chr7 (44990854-44990722) | |
| 489-620, gnl|dasNov1|scaffold_11626 (48049-48185) | |
| 489-620, gnl|echTel1|scaffold_280855 (90675-90549) | |
| 489-620, gnl|galGal2|chrE26C13 (83724-83867) | |
| 489-620, gnl|hg17|chr1 (152384919-152385062) | |
| 489-620, gnl|Hg17|chr1 (152510471-152510602) | |
| 489-620, gnl|loxAfr1|scaffold_101058 (1178-1302) | |
| 489-620, gnl|mm7|chr3 (89043345-89043212) | |
| 489-620, gnl|Mm7|chr3 (89043328-89043197) | |
| 489-620, gnl|monDom2|scaffold_59 (1969203-1969060) | |
| 489-620, gnl|oryCun1|scaffold_116737 (5216-5348) | |
| 489-620, gnl|panTro1|chr1 (134380939-134381082) | |
| 489-620, gnl|rheMac2|chr1 (134172621-134172764) | |
| 489-620, gnl|rn3|chr2 (180944406-180944274) | |
| 489-620, gnl|tetNig1|chr8 (8052849-8052987) | |
| 699-859, gnl|bosTau2|chr3 (13427371-13427211) | |
| 699-859, gnl|canFam2|chr7 (44989514-44989299) | |
| 699-859, gnl|dasNov1|scaffold_11626 (49018-49234) | |
| 699-859, gnl|echTel1|scaffold_280855 (89798-89571) | |
| 699-859, gnl|fr1|chrUn (185470881-185470677) | |
| 699-859, gnl|galGal2|chrE26C13 (84357-84596) | |
| 699-859, gnl|hg17|chr1 (152512033-152512247) | |
| 699-859, gnl|Hg17|chr1 (152512069-152512229) | |
| 699-859, gnl|loxAfr1|scaffold_16376 (23289-23068) | |
| 699-859, gnl|mm7|chr3 (89042202-89041996) | |
| 699-859, gnl|Mm7|chr3 (89042171-89042011) | |
| 699-859, gnl|monDom2|scaffold_59 (1968423-1968212) | |
| 699-859, gnl|oryCun1|scaffold_116737 (6200-6408) | |
| 699-859, gnl|panTro1|chr1 (134390163-134390377) | |
| 699-859, gnl|rheMac2|chr1 (134302562-134302776) | |
| 699-859, gnl|rn3|chr2 (180943220-180943017) | |
| 699-859, gnl|tetNig1|chr8 (8053818-8054017) | |
| 1127-1515, gnl|bosTau2|chr3 (13421306-13420945) | |
| 1127-1515, gnl|Hg17|chr1 (152521019-152521393) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| cbl (0.688784) | |
| pro (0.512033) | |
| ldo (0.485013) | |
| spl (0.429553) | |
| che (0.408942) | |
| duo (0.345602) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cje (0.165235) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| pro (0.512033) | |
| ldo (0.485013) | |
| spl (0.429553) | |
| che (0.408942) | |
| duo (0.345602) | |
| ece (0.229305) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| ton (0.1755) | |
| cje (0.165235) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| cty (0.10408) | |
| jej (0.0989218) |