Non-Coding RNA Search

Ss1.1-Pig4-TMW8020B16.5

Sequence:


               
               AGTCTCACTGGGACACAGCAGGCACTCCTTTAAGTTTTTAAGATGGGCATCATGAAAATC
AACTATCAGTAATAAGTACTAATTTATCTTTTCTAAGACTCGGACAGTCACTATGGATGA
CACTCACTAGGAAAGGGTCAAGATTTTGAACTGAAGCACACTAGATCCAGAAGGTAAACC
TTTGCTCTTTTTCTCTAACTTCTGCTGTTACAGTTCATGAGCAAAGCCTCATGCGGTCAT
GTTCATTTCCCTGGATATAACTTCAGTCTGTTCAGCCAACACCTACTGGATTTTCCTTGT
CCTGTAAGCTTTTTCAGACACCATTTTCTATAGCCCTTTGCACTCTTATTACATCATTGT
ACCTAACTGGTTTTTTTTGGGTGAATCTCTACTTTGTTTTGTGATCACAGTTGGAATCAA
AGCCAATTGATACTAGCCCACGTTAAAAAAACGTTTTTGAGGCAGGTGTTATCCCTTGCC
TCAAAAGCTCAAGTTCATGTTATGTATCACTTCAACATGCATTGTTGAAATGACCAGTGT
TATTTATTTATTTATTTTTGCCTAATGGAAACAAATCACAGCTCCAGGATTGGTCCTTAC
CAAGGCCTGTCCTGAGCCTTGACTTTCTTACCCTTGATAAAGCCATGTTGAAAGCACATC
CTTCTAGGTTTTCTCTGGGTTCTGAGTGCTGTGTTGGTGAAACAATATTCATCTTTTTCT
GGGTTTGCAGACACAACTGAGGTGCTATGTTGGTAATATACCCAGGTATTCTCAACCTGA
TCTATGACTGTTATAAAGAACAAGCATAAATAAGTACCTGCAATAAAAGGAACACTAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCTCACTGGGACACAGCAGGCACTCCTTTAAGTTTTTAAGATGGGCATCATGAAAATC
AACTATCAGTAATAAGTACTAATTTATCTTTTCTAAGACTCGGACAGTCACTATGGATGA
CACTCACTAGGAAAGGGTCAAGATTTTGAACTGAAGCACACTAGATCCAGAAGGTAAACC
TTTGCTCTTTTTCTCTAACTTCTGCTGTTACAGTTCATGAGCAAAGCCTCATGCGGTCAT
GTTCATTTCCCTGGATATAACTTCAGTCTGTTCAGCCAACACCTACTGGATTTTCCTTGT
CCTGTAAGCTTTTTCAGACACCATTTTCTATAGCCCTTTGCACTCTTATTACATCATTGT
ACCTAACTGGTTTTTTTTGGGTGAATCTCTACTTTGTTTTGTGATCACAGTTGGAATCAA
AGCCAATTGATACTAGCCCACGTTAAAAAAACGTTTTTGAGGCAGGTGTTATCCCTTGCC
TCAAAAGCTCAAGTTCATGTTATGTATCACTTCAACATGCATTGTTGAAATGACCAGTGT
TATTTATTTATTTATTTTTGCCTAATGGAAACAAATCACAGCTCCAGGATTGGTCCTTAC
CAAGGCCTGTCCTGAGCCTTGACTTTCTTACCCTTGATAAAGCCATGTTGAAAGCACATC
CTTCTAGGTTTTCTCTGGGTTCTGAGTGCTGTGTTGGTGAAACAATATTCATCTTTTTCT
GGGTTTGCAGACACAACTGAGGTGCTATGTTGGTAATATACCCAGGTATTCTCAACCTGA
TCTATGACTGTTATAAAGAACAAGCATAAATAAGTACCTGCAATAAAAGGAACACTAACC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               43-836, gnl|bosTau2|chr15 (27767387-27766583)
               

               
               43-836, gnl|Hg17|chr11 (10485774-10488944)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-836, gnl|bosTau2|chr15 (27767387-27766583)
               

               
               43-836, gnl|Hg17|chr11 (10485774-10488944)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               lyg (0.133103)

	43-836, gnl\|bosTau2\|chr15 (27767387-27766583)
	43-836, gnl\|Hg17\|chr11 (10485774-10488944)