Non-Coding RNA Search

Ss1.1-Pig4-TMW8020B19.5

Sequence:


               
               TTGTACCTGGTTGCTGTAGCATAGCCTGTGACACTGGGCTCGCTGCCTGTGTCTGGTTTT
GTTGTCTTTGTATGCAAGTAATCCATCTTAAACACCCTACCCTGCTTTAGAAACTGACTT
GGGAAAAGCTTGGTCATAGTTACCAGTAAATTTAGCTGGATGTCCTTACATGTTAACTAT
TTCTATCTCGTCAAGTATTCTCTTTTCCTTGGATATCTGGTTTAGAATGTGGGGCCAAAA
TACAAAGGAGAAGTTCTGTTCAAAGGCAAGAGTCAAAATCTTTTATTGCAGTTGGCATTT
ACTATCTCAGTCACTTCTCCGGGTTTCCCTAAATTAGCTTGATGGAGTGAGAGAAACAGA
CATCCACCTTTGGAACAGTAGCATAGTTAGAATTAATAGTAGCTAGGATAGCTAGCATTG
CAGTTGTCTGGTTCCCCACAGACAACCAAGGAGTAAAGGGACAGCCTTTTGCTTAGACTC
AGGCTCCTGCCTCCCTGGTACAGGAGGGCCTAAGTCTGATGTGTAATGGGAGCATAGCCT
TTGCCAAATCAAATGAGTGACGGGTTAACTAGAAAATGTGACAATCACATTTCCTTTTGC
TCAAATAATTCTGTTTTTCCCAAAGCTTTAGCAGCTAAATTAAATCTGTTGGACTGGGGG
AGGAGAGAACTGTTCCCTAACGGTTAACATGGTATTCTTTAAGCAGAAAAACAAAGCCAA
AGAAAACTCATTATCAGGCATGTTGGCCTTAAAGATGGTAGTGGGTAGAATCTGGAGTTT
TAATCTGTTTTTAAAGCTACATTTCTCATATTTGGTTTTGGCCTCTCAGTCTAATTTTCA
TGTAGAATTCTTGCTGGGTTGTTTTATTTGAGTAAGGATTGTGTGCGTTTAACGGCCTAC
CTAGCTTTCTTCCTCTGTGATGACATTTCACCACAGGGGTCTTGACAAAGCAGAGTAGAA
ATGTGCTGTTTACATGGTTTACTTGTAAGTAAAGAGCCTGCAATAACCTGTAGTTTTGCA
TCTAATGCAGACCCTGATTTACTTGTCAGGATCAGTTATGAAACTGAAGTTTGGCGCCTC
CTCTTTATCATGTTTTTCCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAAATAA
AAGTTCTTGTCAGTGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTACCTGGTTGCTGTAGCATAGCCTGTGACACTGGGCTCGCTGCCTGTGTCTGGTTTT
GTTGTCTTTGTATGCAAGTAATCCATCTTAAACACCCTACCCTGCTTTAGAAACTGACTT
GGGAAAAGCTTGGTCATAGTTACCAGTAAATTTAGCTGGATGTCCTTACATGTTAACTAT
TTCTATCTCGTCAAGTATTCTCTTTTCCTTGGATATCTGGTTTAGAATGTGGGGCCAAAA
TACAAAGGAGAAGTTCTGTTCAAAGGCAAGAGTCAAAATCTTTTATTGCAGTTGGCATTT
ACTATCTCAGTCACTTCTCCGGGTTTCCCTAAATTAGCTTGATGGAGTGAGAGAAACAGA
CATCCACCTTTGGAACAGTAGCATAGTTAGAATTAATAGTAGCTAGGATAGCTAGCATTG
CAGTTGTCTGGTTCCCCACAGACAACCAAGGAGTAAAGGGACAGCCTTTTGCTTAGACTC
AGGCTCCTGCCTCCCTGGTACAGGAGGGCCTAAGTCTGATGTGTAATGGGAGCATAGCCT
TTGCCAAATCAAATGAGTGACGGGTTAACTAGAAAATGTGACAATCACATTTCCTTTTGC
TCAAATAATTCTGTTTTTCCCAAAGCTTTAGCAGCTAAATTAAATCTGTTGGACTGGGGG
AGGAGAGAACTGTTCCCTAACGGTTAACATGGTATTCTTTAAGCAGAAAAACAAAGCCAA
AGAAAACTCATTATCAGGCATGTTGGCCTTAAAGATGGTAGTGGGTAGAATCTGGAGTTT
TAATCTGTTTTTAAAGCTACATTTCTCATATTTGGTTTTGGCCTCTCAGTCTAATTTTCA
TGTAGAATTCTTGCTGGGTTGTTTTATTTGAGTAAGGATTGTGTGCGTTTAACGGCCTAC
CTAGCTTTCTTCCTCTGTGATGACATTTCACCACAGGGGTCTTGACAAAGCAGAGTAGAA
ATGTGCTGTTTACATGGTTTACTTGTAAGTAAAGAGCCTGCAATAACCTGTAGTTTTGCA
TCTAATGCAGACCCTGATTTACTTGTCAGGATCAGTTATGAAACTGAAGTTTGGCGCCTC
CTCTTTATCATGTTTTTCCCCTTGTAGCAGTTGTGTTTAATGTCATTAAAAAGAAAATAA
AAGTTCTTGTCAGTGAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-1155, gnl|bosTau2|chr2 (74124774-74125959)
               

               
               3-1155, gnl|Hg17|chr1 (32992396-32993568)
               

               
               3-1155, gnl|Mm7|chr4 (128594252-128592652)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1155, gnl|bosTau2|chr2 (74124774-74125959)
               

               
               3-1155, gnl|Hg17|chr1 (32992396-32993568)
               

               
               3-1155, gnl|Mm7|chr4 (128594252-128592652)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               jej (0.197844)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               med (0.116252)

	3-1155, gnl\|bosTau2\|chr2 (74124774-74125959)
	3-1155, gnl\|Hg17\|chr1 (32992396-32993568)
	3-1155, gnl\|Mm7\|chr4 (128594252-128592652)

	jej (0.197844)
	fty (0.17584)
	lnt (0.142308)
	nca (0.136874)
	ute (0.132784)
	med (0.116252)