Ss1.1-Pig4-TMW8020C23.5
|
AACATCCTCGAGCTGGTTCACTATCACGAGTGTGACTCGCGACCCTCGAAAAAAGCTGAG
CACCTGCAGTGCCTGCTAACCCTGCAGATCCAGCGCGTCCACGCCAGGTTCGCCGTCTTC
CTCACAGAAAAGCCCGCACTCTCCAGAGAAGTCTTTGAAGATAGTGGCATTCTTGTTACA
GATGTAAATGACTTTATTGAAAATATGCAAAAAGTAGCCGCTCCCTTCAGGAGCAGCTAT
TGGTAAGAGCAGGGTGGCCTCTCGCACGTGAGCTGGAACTGGCGTCTGTGTCCTGAGAAA
CCAGTTGTTCGAAATTGTCCTGTACCTTGCACATCATGCTGTAAACGCCTCCGTTCACTT
GGGGGTGGAATTGCTGCTGGTTTGGCGTAAACGGGCCCTTCTCAAGTACCACTAGCGAAC
TAACTAAGCTGCCTTCTGAACGACGTGCCTCTGCACCTGCATCCCTGACGCCAGGACCGG
TGATGGAACCCGGGCGCGGAGGCCTTTTCCCAGCCATCAGCATCCCGCTCATGCACTAGT
GCTCGTTGCTTGGTCTTACAGGTGGGCTTGTCAGCAGTTCTGCTTCCAGGTGATGCGCCT
GCCGCTTTCCTGGACAGTGATGACGCCCCCAACAAGCCACTCTCGTCCCTCTCCTTGGAG
ACTTTCAGATGCACAGAACAGCCCTCTCACATTTGAGCAACCCTATCCTTCTTGTGTCAC
ACGTCACTAGAACATCTGGCTTTGGTCACAGCAGCACTGCAGCTGTCCGTTTGGGGTTGC
AGTGTTAGTGTTTTTAAGTTATTTTCATTTTAAACAGAATGCCTTCAAAACTATTGATTG
AACTTGAGTTTCATAAGTGTACTCAAGTGTAGCAAACCTACGTCTCTTACCCAGTAGCAG
TGTTTTTGCATGTTCCGGTCAGACGGTCAGAAAAGCGTATGTACTACACGTGACAGCTTT
AAAGGTTTTCCCGCCTGTGTGAACACAATGATCCTATGTGGTTTTATTTGCTGTTATTCA
CACTACATCAACTTTTTTCCTAAACGGTACAAATTTATAAACTGTCATTTTTCACTTCGT
TTTTGTACATAGTCACTACAAAAATCAACCCTGAGAAAGAAATGACCATTTATTTATATT
AGAATGATTTCTACAGTAATCTTAACCTCAAAACCAAGCAAAAAAAAAAAACATTTGTAA
GATACATAGTATCTATTTGGTACAAACGTTTTTGTAACTGATCTCATTTTTTTAATAAAG
ACAACGAAGTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AACATCCTCGAGCTGGTTCACTATCACGAGTGTGACTCGCGACCCTCGAAAAAAGCTGAG
CACCTGCAGTGCCTGCTAACCCTGCAGATCCAGCGCGTCCACGCCAGGTTCGCCGTCTTC
CTCACAGAAAAGCCCGCACTCTCCAGAGAAGTCTTTGAAGATAGTGGCATTCTTGTTACA
GATGTAAATGACTTTATTGAAAATATGCAAAAAGTAGCCGCTCCCTTCAGGAGCAGCTAT
TGGTAAGAGCAGGGTGGCCTCTCGCACGTGAGCTGGAACTGGCGTCTGTGTCCTGAGAAA
CCAGTTGTTCGAAATTGTCCTGTACCTTGCACATCATGCTGTAAACGCCTCCGTTCACTT
GGGGGTGGAATTGCTGCTGGTTTGGCGTAAACGGGCCCTTCTCAAGTACCACTAGCGAAC
TAACTAAGCTGCCTTCTGAACGACGTGCCTCTGCACCTGCATCCCTGACGCCAGGACCGG
TGATGGAACCCGGGCGCGGAGGCCTTTTCCCAGCCATCAGCATCCCGCTCATGCACTAGT
GCTCGTTGCTTGGTCTTACAGGTGGGCTTGTCAGCAGTTCTGCTTCCAGGTGATGCGCCT
GCCGCTTTCCTGGACAGTGATGACGCCCCCAACAAGCCACTCTCGTCCCTCTCCTTGGAG
ACTTTCAGATGCACAGAACAGCCCTCTCACATTTGAGCAACCCTATCCTTCTTGTGTCAC
ACGTCACTAGAACATCTGGCTTTGGTCACAGCAGCACTGCAGCTGTCCGTTTGGGGTTGC
AGTGTTAGTGTTTTTAAGTTATTTTCATTTTAAACAGAATGCCTTCAAAACTATTGATTG
AACTTGAGTTTCATAAGTGTACTCAAGTGTAGCAAACCTACGTCTCTTACCCAGTAGCAG
TGTTTTTGCATGTTCCGGTCAGACGGTCAGAAAAGCGTATGTACTACACGTGACAGCTTT
AAAGGTTTTCCCGCCTGTGTGAACACAATGATCCTATGTGGTTTTATTTGCTGTTATTCA
CACTACATCAACTTTTTTCCTAAACGGTACAAATTTATAAACTGTCATTTTTCACTTCGT
TTTTGTACATAGTCACTACAAAAATCAACCCTGAGAAAGAAATGACCATTTATTTATATT
AGAATGATTTCTACAGTAATCTTAACCTCAAAACCAAGCAAAAAAAAAAAACATTTGTAA
GATACATAGTATCTATTTGGTACAAACGTTTTTGTAACTGATCTCATTTTTTTAATAAAG
ACAACGAAGTAT
|
|
gi|61885127|ref|XP_604421.1| |
Protein identifier
|
gi|61885127|ref|XP_604421.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
124-251, gnl|bosTau2|chr13 (27816929-27817056) |
|
124-251, gnl|canFam2|chr2 (33014118-33013983) |
|
124-251, gnl|dasNov1|scaffold_2134 (14970-14834) |
|
124-251, gnl|echTel1|scaffold_307889 (38934-38799) |
|
124-251, gnl|galGal2|chr14 (14954930-14954795) |
|
124-251, gnl|hg17|chr10 (5844487-5844622) |
|
124-251, gnl|Hg17|chr10 (5844497-5844624) |
|
124-251, gnl|loxAfr1|scaffold_8356 (114720-114852) |
|
124-251, gnl|mm7|chr13 (3451418-3451282) |
|
124-251, gnl|Mm7|chr13 (3451405-3451278) |
|
124-251, gnl|monDom2|scaffold_31 (28958067-28958200) |
|
124-251, gnl|oryCun1|scaffold_204525 (76471-76621) |
|
124-251, gnl|panTro1|chr8 (5927201-5927339) |
|
124-251, gnl|rheMac2|chr9 (6037026-6037172) |
|
124-251, gnl|rn3|chr17 (77852755-77852891) |
|
124-251, gnl|xenTro1|scaffold_20 (408788-408640) |
| |
|
278-1268, gnl|bosTau2|chr13 (27817101-27818083) |
|
278-1268, gnl|Hg17|chr10 (5844672-5845703) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
124-251, gnl|bosTau2|chr13 (27816929-27817056) |
|
124-251, gnl|canFam2|chr2 (33014118-33013983) |
|
124-251, gnl|dasNov1|scaffold_2134 (14970-14834) |
|
124-251, gnl|echTel1|scaffold_307889 (38934-38799) |
|
124-251, gnl|galGal2|chr14 (14954930-14954795) |
|
124-251, gnl|hg17|chr10 (5844487-5844622) |
|
124-251, gnl|Hg17|chr10 (5844497-5844624) |
|
124-251, gnl|loxAfr1|scaffold_8356 (114720-114852) |
|
124-251, gnl|mm7|chr13 (3451418-3451282) |
|
124-251, gnl|Mm7|chr13 (3451405-3451278) |
|
124-251, gnl|monDom2|scaffold_31 (28958067-28958200) |
|
124-251, gnl|oryCun1|scaffold_204525 (76471-76621) |
|
124-251, gnl|panTro1|chr8 (5927201-5927339) |
|
124-251, gnl|rheMac2|chr9 (6037026-6037172) |
|
124-251, gnl|rn3|chr17 (77852755-77852891) |
|
124-251, gnl|xenTro1|scaffold_20 (408788-408640) |
| |
|
278-1268, gnl|bosTau2|chr13 (27817101-27818083) |
|
278-1268, gnl|Hg17|chr10 (5844672-5845703) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
thg (0.380373) |
|
cje (0.330469) |
|
csk (0.281492) |
|
tra (0.246184) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
lyg (0.133103) |
|
pro (0.512033) |
|
cbe (0.478469) |
|
thg (0.380373) |
|
cje (0.330469) |
|
csk (0.281492) |
|
tra (0.246184) |
|
cmu (0.186393) |
|
sag (0.182715) |
|
mga (0.160205) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
lin (0.145603) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
lyg (0.133103) |
