Ss1.1-Pig4-TMW8020D04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTGTCAGGGTCAGCCCTCAATCAGAAGCCTGGCTCATGGCTATATGGGGCCCGGGAGG TCGCCTTGGCCTGCGTGGGTGCCTTGGTGCCCGCAGGCTACTGTGTCTCCGTTTTCAGAG CCGTGGCCCCCAAGGCGTGGAAGACGGGGAGAGGCCACAGCCTTCCTCAAAGACGCCCAA AATCCCCAAGATCTACACCAAGACAGGAGACAAAGGGTTTTCTAGCACCTTCACCGGAGA AAGGAGACCCAAAGATGACCAGGTGTTTGAAGCCGTGGGGACTACAGATGAATTAAGTTC AGCCATCGGGTTTGCTATGGAATTAATTGCAGAAAAGGGCCACCCGTTTGCTGAAGAGCT TCAGAAAATCCAGTGCTCCCTGCAGGACATTGGCGCTGCCCTGGCCACACCGCGCTCCTC GGCCAGGGAGGCTCACTTAAAACACACCACGTTCGAGGTGGGGCCCATCCTGGAGCTGGA GCAGTGGATCGACAGATACTCCAGCCAGCTGCCCCCACTCACAGCCTTTATCCTGCCTTC AGGAGGCAAGAGCAGCTCTGCACTGCACTTCTGTCGGGCCGTGTGCCGGCGAGCAGAGAG ACGTGTGGTGCCTCTTGTCCAGACGGGTGAGACAGATGTGAACGTGGCCAAGTTCTTAAA CAGACTCAGCGACTATCTCTTCACGTTAGCCAGATATGCAGCCATGAAGGAGGGGAATCC AGAAAAAATATATAAGAAAAATGACCCATCAGATCCAGCCTGAGGTGCTTGGAAATCATG GGGAAAGGGAGCTTCGCAGACCCCTCCATGCTGACAACAGCGAAGAGTTTGCCCCTCGTG CCCTGATTCCTGAAGATCTCACCCACAGGGGCCGGAAGGTGGTCTTTTGTCCAGACGCAG CTTCTCTCAGACCCCTGCACTTCCTTTAGGAGCTGTGGCTGGTGGAGAACCTGGCCCCTT CTCCCGTAGGCTCTCCTGGGTCTTCCAGGAAGTGGGACTGAATCAGTGTTGCTGGAAAGA CAGACAAAGTGATGGCTTCTTTGAGGACCATGCAGAAAAAGAGTAAAAGTGGGAAAGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTGTCAGGGTCAGCCCTCAATCAGAAGCCTGGCTCATGGCTATATGGGGCCCGGGAGG TCGCCTTGGCCTGCGTGGGTGCCTTGGTGCCCGCAGGCTACTGTGTCTCCGTTTTCAGAG CCGTGGCCCCCAAGGCGTGGAAGACGGGGAGAGGCCACAGCCTTCCTCAAAGACGCCCAA AATCCCCAAGATCTACACCAAGACAGGAGACAAAGGGTTTTCTAGCACCTTCACCGGAGA AAGGAGACCCAAAGATGACCAGGTGTTTGAAGCCGTGGGGACTACAGATGAATTAAGTTC AGCCATCGGGTTTGCTATGGAATTAATTGCAGAAAAGGGCCACCCGTTTGCTGAAGAGCT TCAGAAAATCCAGTGCTCCCTGCAGGACATTGGCGCTGCCCTGGCCACACCGCGCTCCTC GGCCAGGGAGGCTCACTTAAAACACACCACGTTCGAGGTGGGGCCCATCCTGGAGCTGGA GCAGTGGATCGACAGATACTCCAGCCAGCTGCCCCCACTCACAGCCTTTATCCTGCCTTC AGGAGGCAAGAGCAGCTCTGCACTGCACTTCTGTCGGGCCGTGTGCCGGCGAGCAGAGAG ACGTGTGGTGCCTCTTGTCCAGACGGGTGAGACAGATGTGAACGTGGCCAAGTTCTTAAA CAGACTCAGCGACTATCTCTTCACGTTAGCCAGATATGCAGCCATGAAGGAGGGGAATCC AGAAAAAATATATAAGAAAAATGACCCATCAGATCCAGCCTGAGGTGCTTGGAAATCATG GGGAAAGGGAGCTTCGCAGACCCCTCCATGCTGACAACAGCGAAGAGTTTGCCCCTCGTG CCCTGATTCCTGAAGATCTCACCCACAGGGGCCGGAAGGTGGTCTTTTGTCCAGACGCAG CTTCTCTCAGACCCCTGCACTTCCTTTAGGAGCTGTGGCTGGTGGAGAACCTGGCCCCTT CTCCCGTAGGCTCTCCTGGGTCTTCCAGGAAGTGGGACTGAATCAGTGTTGCTGGAAAGA CAGACAAAGTGATGGCTTCTTTGAGGACCATGCAGAAAAAGAGTAAAAGTGGGAAAGGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 54-154, - strand, RNAz p=0.57504 | |
| 55-154, + strand, RNAz p=0.686601 | |
| 857-1004, - strand, RNAz p=0.933303 | |
| 859-1068, + strand, RNAz p=0.947251 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 54-154, - strand, RNAz p=0.57504 | |
| 55-154, + strand, RNAz p=0.686601 | |
| 857-1004, - strand, RNAz p=0.933303 | |
| 859-1068, + strand, RNAz p=0.947251 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_052845, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 3-154, gnl|bosTau2|chr17 (35666545-35666394) | |
| 3-154, gnl|canFam2|chr26 (20545151-20544239) | |
| 3-154, gnl|dasNov1|scaffold_39718 (696-1566) | |
| 3-154, gnl|echTel1|scaffold_310903 (81552-80652) | |
| 3-154, gnl|hg17|chr12 (108473638-108474618) | |
| 3-154, gnl|Hg17|chr12 (108474040-108473871) | |
| 3-154, gnl|loxAfr1|scaffold_14958 (960-4) | |
| 3-154, gnl|mm7|chr5 (113665461-113666327) | |
| 3-154, gnl|Mm7|chr5 (113665802-113665651) | |
| 3-154, gnl|oryCun1|scaffold_203691 (84825-85686) | |
| 3-154, gnl|panTro1|chr10_random (2940002-2939042) | |
| 3-154, gnl|rheMac2|chr11 (110576064-110577034) | |
| 211-311, gnl|bosTau2|chr17 (35664205-35664105) | |
| 211-311, gnl|canFam2|chr26 (20546871-20546756) | |
| 211-311, gnl|danRer3|chr5 (9669739-9669848) | |
| 211-311, gnl|dasNov1|scaffold_729 (21498-21383) | |
| 211-311, gnl|echTel1|scaffold_294731 (56784-56895) | |
| 211-311, gnl|fr1|chrUn (1695446-1695551) | |
| 211-311, gnl|galGal2|chrUn (53635182-53635295) | |
| 211-311, gnl|hg17|chr12 (108469288-108469405) | |
| 211-311, gnl|Hg17|chr12 (108469393-108469293) | |
| 211-311, gnl|loxAfr1|scaffold_14958 (9536-9421) | |
| 211-311, gnl|mm7|chr5 (113660290-113660407) | |
| 211-311, gnl|Mm7|chr5 (113660395-113660295) | |
| 211-311, gnl|monDom2|scaffold_192 (907386-907273) | |
| 211-311, gnl|oryCun1|scaffold_203691 (80122-80237) | |
| 211-311, gnl|panTro1|chr10_random (2944367-2944250) | |
| 211-311, gnl|rheMac2|chr11 (110571682-110571799) | |
| 211-311, gnl|tetNig1|chr12 (6291028-6291133) | |
| 661-781, gnl|bosTau2|chr17 (35656510-35656390) | |
| 661-781, gnl|Hg17|chr12 (108457664-108457545) | |
| 661-781, gnl|Mm7|chr5 (113655137-113655040) | |
| 819-1068, gnl|bosTau2|chr17 (35656374-35656130) | |
| 819-1068, gnl|canFam2|chr26 (20555153-20555017) | |
| 819-1068, gnl|echTel1|scaffold_109449 (702-537) | |
| 819-1068, gnl|galGal2|chrUn (53631989-53632125) | |
| 819-1068, gnl|hg17|chr12 (108457223-108457410) | |
| 819-1068, gnl|Hg17|chr12 (108457502-108457245) | |
| 819-1068, gnl|loxAfr1|scaffold_14958 (17596-17425) | |
| 819-1068, gnl|mm7|chr5 (113654795-113654949) | |
| 819-1068, gnl|monDom2|scaffold_192 (913171-913062) | |
| 819-1068, gnl|oryCun1|scaffold_206468 (42108-41931) | |
| 819-1068, gnl|panTro1|chr10_random (2956485-2956298) | |
| 819-1068, gnl|rheMac2|chr11 (110559771-110559958) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-154, gnl|bosTau2|chr17 (35666545-35666394) | |
| 3-154, gnl|canFam2|chr26 (20545151-20544239) | |
| 3-154, gnl|dasNov1|scaffold_39718 (696-1566) | |
| 3-154, gnl|echTel1|scaffold_310903 (81552-80652) | |
| 3-154, gnl|hg17|chr12 (108473638-108474618) | |
| 3-154, gnl|Hg17|chr12 (108474040-108473871) | |
| 3-154, gnl|loxAfr1|scaffold_14958 (960-4) | |
| 3-154, gnl|mm7|chr5 (113665461-113666327) | |
| 3-154, gnl|Mm7|chr5 (113665802-113665651) | |
| 3-154, gnl|oryCun1|scaffold_203691 (84825-85686) | |
| 3-154, gnl|panTro1|chr10_random (2940002-2939042) | |
| 3-154, gnl|rheMac2|chr11 (110576064-110577034) | |
| 211-311, gnl|bosTau2|chr17 (35664205-35664105) | |
| 211-311, gnl|canFam2|chr26 (20546871-20546756) | |
| 211-311, gnl|danRer3|chr5 (9669739-9669848) | |
| 211-311, gnl|dasNov1|scaffold_729 (21498-21383) | |
| 211-311, gnl|echTel1|scaffold_294731 (56784-56895) | |
| 211-311, gnl|fr1|chrUn (1695446-1695551) | |
| 211-311, gnl|galGal2|chrUn (53635182-53635295) | |
| 211-311, gnl|hg17|chr12 (108469288-108469405) | |
| 211-311, gnl|Hg17|chr12 (108469393-108469293) | |
| 211-311, gnl|loxAfr1|scaffold_14958 (9536-9421) | |
| 211-311, gnl|mm7|chr5 (113660290-113660407) | |
| 211-311, gnl|Mm7|chr5 (113660395-113660295) | |
| 211-311, gnl|monDom2|scaffold_192 (907386-907273) | |
| 211-311, gnl|oryCun1|scaffold_203691 (80122-80237) | |
| 211-311, gnl|panTro1|chr10_random (2944367-2944250) | |
| 211-311, gnl|rheMac2|chr11 (110571682-110571799) | |
| 211-311, gnl|tetNig1|chr12 (6291028-6291133) | |
| 661-781, gnl|bosTau2|chr17 (35656510-35656390) | |
| 661-781, gnl|Hg17|chr12 (108457664-108457545) | |
| 661-781, gnl|Mm7|chr5 (113655137-113655040) | |
| 819-1068, gnl|bosTau2|chr17 (35656374-35656130) | |
| 819-1068, gnl|canFam2|chr26 (20555153-20555017) | |
| 819-1068, gnl|echTel1|scaffold_109449 (702-537) | |
| 819-1068, gnl|galGal2|chrUn (53631989-53632125) | |
| 819-1068, gnl|hg17|chr12 (108457223-108457410) | |
| 819-1068, gnl|Hg17|chr12 (108457502-108457245) | |
| 819-1068, gnl|loxAfr1|scaffold_14958 (17596-17425) | |
| 819-1068, gnl|mm7|chr5 (113654795-113654949) | |
| 819-1068, gnl|monDom2|scaffold_192 (913171-913062) | |
| 819-1068, gnl|oryCun1|scaffold_206468 (42108-41931) | |
| 819-1068, gnl|panTro1|chr10_random (2956485-2956298) | |
| 819-1068, gnl|rheMac2|chr11 (110559771-110559958) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.165235) |