Non-Coding RNA Search

Ss1.1-Pig4-TMW8020D07.5

Sequence:


               
               GCTTTGTCTCTCTTTTCAAATTATGGGTATTTATCCTCTATTAGTATTTGCATCTTCAGT
TTCATTCCACTTTAGGAAACAGAGCTGTCAATTGAAACAAGAGGAAAAAAAAGCAAACAA
CACATTGTACTGTCTTGCACACACACACAAATGCCCAGGCAAAGTGTTGGCAGAACTCCA
GAGTGGGAAGGCAGTAGAGGCATCTGGTTTCCTTAGGATCAATTTCATTACCTAGTACCT
TTCATCATGTGGTTGTGACATGTGGCATACAGGAAATGAGATGCTTTGTCCTCTCAGTGG
GGCAGTGTAAGCAGAAGGAGCTGAGGTGATCAGGCCAGTGCTTTTTAAGGGGTGAGCCCC
AGATCTGGTGTTTTAAGATTTTCTTTATTTGAACCTCAGAGTCCTACAAGGTAGAATCCC
TGACCCAACCTGCACAAATGCCCCCTCCCCCCGACAACTGGACATCAGTGTGACCTCCAT
GAGGCATCTGGTTATTCTTGGTTGCTGGTGGGGTCAACTCCACTCACACAAGGAGGGGCT
TGGGGTGAGGCCTGAGTATGAATCATCTGAAGTTTCCTTGCTGAAAAGTTGGTGGAACCA
TAGCCCCATCTGCCAGGCCCTGGCAAGGAGAACAGCAGGTCCTGGGCCTAAAGAAGGGTC
CTTTGCAAAGTGATGTTGTCAGAGGGCGGTTTTTGAGCTTTCTATAAGCTATAGCTTTGT
TTATTTCACCTGTTCACTTACTGTATAATTTAAAGTCATTTATGTAGCTGAGACACTTCT
GTATTTCATTCATATCGTGAACGTTTTATTTTGCTAAATCTTATGTCATGTGTAGGCTGT
AATATGTGTACATTGTGTTTAAGAGAAAAAAAAAATGAAACCCACATGCCGCCATTTTCC
TGAATCAAATTCTACAATGGAATGGAGGGTAAATACTTCTACTGTGCAGGCAGCCAGACT
GGCAAATTGGAGAAACTAGAAGGAACTAGCCCCTGAGACTCCTCCAGCCTCCTTCCTATT
GGCATCCTTGTGTTTTCTGGAGTAGGAAGGAGGAGGGAAACAAGAGCAAGTACATTCACA
TCCTTGCTCTGCATCAACTGGCCCTGGGCAGTCTGCTGGGCATTCCCATCCTTTTTCCCC
CATCTGTTTGCCCACCCCACTGGGAAGCCATGATTTCTCCTAACAGTCCAGGGCCATGGG
AGCTGTGATTCCAAGAGCCCTTGGCCTCCTCTGGCCATCTCGTCTGCCTCCCGATCCAGG
AAGCACCACACCCATGCTCTCACTACTCAGGCCAGTGCTCCATTTGGCCAGGGTGGATAA
GAATTCTGTGCTTTATTCTGACCCAGCCCCAGCCCCAACATCACAATGGTCAAGGTACAG
CCCATGAGCACCATCTTTCATACCATGGTTCTTGAGCAGTTAAAAAACAAATGACTTGCT
GGAACAGCTGTCTCAGAGACACTGTGGTCCCTAGGAGACAAGACTCTCCCTGATCCTGCC
TTTTGTCATGTGTTTGCCAATCAACAATACGGATTACCCCAAAATGACGCCCAAGTATTT
GGCTCCTGGCTGCTAAAGTAAAAATATCACTGAAATAATTTTACACAGGAAAAACACTTA
AAAATCTGATGGCAAAAGCAAAAAAAATAGGGGCAGTGCTGGGGGGATGGATACTAATAA
CTTCCAAATTGGCTCTTGCTTGGGAAGCATGAGGAGGACTCATCCTCCAAGGGGCGAGGC
TTCGTAAATCCCCTTATGTCCCCACCTTCCTCCTCAGCCAGTCTGCTGTCCTGAGACCCA
GAAGTGAAGGAGAGAAACCAACCAGAGAAAACCCTGTCTGGAAGGAATGTATTTGTTGCT
AAATTTTGTAGCACTGTTTACAGTTTTCCTCCATGTTATTTATGAATTTTATATTCCGTG
AATGTATATTGTCTTGTAATGTTGCATAATGTTCACTTTTTATAGTGTGTCCTTTATTCT
AAACAGTAAAGTGGTTTTATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTGTCTCTCTTTTCAAATTATGGGTATTTATCCTCTATTAGTATTTGCATCTTCAGT
TTCATTCCACTTTAGGAAACAGAGCTGTCAATTGAAACAAGAGGAAAAAAAAGCAAACAA
CACATTGTACTGTCTTGCACACACACACAAATGCCCAGGCAAAGTGTTGGCAGAACTCCA
GAGTGGGAAGGCAGTAGAGGCATCTGGTTTCCTTAGGATCAATTTCATTACCTAGTACCT
TTCATCATGTGGTTGTGACATGTGGCATACAGGAAATGAGATGCTTTGTCCTCTCAGTGG
GGCAGTGTAAGCAGAAGGAGCTGAGGTGATCAGGCCAGTGCTTTTTAAGGGGTGAGCCCC
AGATCTGGTGTTTTAAGATTTTCTTTATTTGAACCTCAGAGTCCTACAAGGTAGAATCCC
TGACCCAACCTGCACAAATGCCCCCTCCCCCCGACAACTGGACATCAGTGTGACCTCCAT
GAGGCATCTGGTTATTCTTGGTTGCTGGTGGGGTCAACTCCACTCACACAAGGAGGGGCT
TGGGGTGAGGCCTGAGTATGAATCATCTGAAGTTTCCTTGCTGAAAAGTTGGTGGAACCA
TAGCCCCATCTGCCAGGCCCTGGCAAGGAGAACAGCAGGTCCTGGGCCTAAAGAAGGGTC
CTTTGCAAAGTGATGTTGTCAGAGGGCGGTTTTTGAGCTTTCTATAAGCTATAGCTTTGT
TTATTTCACCTGTTCACTTACTGTATAATTTAAAGTCATTTATGTAGCTGAGACACTTCT
GTATTTCATTCATATCGTGAACGTTTTATTTTGCTAAATCTTATGTCATGTGTAGGCTGT
AATATGTGTACATTGTGTTTAAGAGAAAAAAAAAATGAAACCCACATGCCGCCATTTTCC
TGAATCAAATTCTACAATGGAATGGAGGGTAAATACTTCTACTGTGCAGGCAGCCAGACT
GGCAAATTGGAGAAACTAGAAGGAACTAGCCCCTGAGACTCCTCCAGCCTCCTTCCTATT
GGCATCCTTGTGTTTTCTGGAGTAGGAAGGAGGAGGGAAACAAGAGCAAGTACATTCACA
TCCTTGCTCTGCATCAACTGGCCCTGGGCAGTCTGCTGGGCATTCCCATCCTTTTTCCCC
CATCTGTTTGCCCACCCCACTGGGAAGCCATGATTTCTCCTAACAGTCCAGGGCCATGGG
AGCTGTGATTCCAAGAGCCCTTGGCCTCCTCTGGCCATCTCGTCTGCCTCCCGATCCAGG
AAGCACCACACCCATGCTCTCACTACTCAGGCCAGTGCTCCATTTGGCCAGGGTGGATAA
GAATTCTGTGCTTTATTCTGACCCAGCCCCAGCCCCAACATCACAATGGTCAAGGTACAG
CCCATGAGCACCATCTTTCATACCATGGTTCTTGAGCAGTTAAAAAACAAATGACTTGCT
GGAACAGCTGTCTCAGAGACACTGTGGTCCCTAGGAGACAAGACTCTCCCTGATCCTGCC
TTTTGTCATGTGTTTGCCAATCAACAATACGGATTACCCCAAAATGACGCCCAAGTATTT
GGCTCCTGGCTGCTAAAGTAAAAATATCACTGAAATAATTTTACACAGGAAAAACACTTA
AAAATCTGATGGCAAAAGCAAAAAAAATAGGGGCAGTGCTGGGGGGATGGATACTAATAA
CTTCCAAATTGGCTCTTGCTTGGGAAGCATGAGGAGGACTCATCCTCCAAGGGGCGAGGC
TTCGTAAATCCCCTTATGTCCCCACCTTCCTCCTCAGCCAGTCTGCTGTCCTGAGACCCA
GAAGTGAAGGAGAGAAACCAACCAGAGAAAACCCTGTCTGGAAGGAATGTATTTGTTGCT
AAATTTTGTAGCACTGTTTACAGTTTTCCTCCATGTTATTTATGAATTTTATATTCCGTG
AATGTATATTGTCTTGTAATGTTGCATAATGTTCACTTTTTATAGTGTGTCCTTTATTCT
AAACAGTAAAGTGGTTTTATTTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1147-1343, - strand, RNAz p=0.982881

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1147-1343, - strand, RNAz p=0.982881

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-2004, gnl|bosTau2|chr5 (43058466-43056464)
               

               
               1-2004, gnl|Hg17|chr22 (31581611-31583576)
               

               
               1-2004, gnl|Mm7|chr10 (85905740-85907711)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2004, gnl|bosTau2|chr5 (43058466-43056464)
               

               
               1-2004, gnl|Hg17|chr22 (31581611-31583576)
               

               
               1-2004, gnl|Mm7|chr10 (85905740-85907711)

Expressed library(ies): 57 entry(ies)

More info

Expressed library(ies): 57 entry(ies)

Help | Less info


               
               aor (2.73384)
               

               
               cty (1.87344)
               

               
               fat (1.17942)
               

               
               bla (0.994777)
               

               
               sme (0.91631)
               

               
               gul (0.887942)
               

               
               tra (0.861645)
               

               
               ret (0.7724)
               

               
               spl (0.572738)
               

               
               jca (0.569801)
               

               
               csk (0.562984)
               

               
               ste (0.540833)
               

               
               sto (0.539471)
               

               
               ova (0.516529)
               

               
               med (0.465008)
               

               
               cst (0.420109)
               

               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (2.73384)
               

               
               cty (1.87344)
               

               
               fat (1.17942)
               

               
               bla (0.994777)
               

               
               sme (0.91631)
               

               
               gul (0.887942)
               

               
               tra (0.861645)
               

               
               ret (0.7724)
               

               
               spl (0.572738)
               

               
               jca (0.569801)
               

               
               csk (0.562984)
               

               
               ste (0.540833)
               

               
               sto (0.539471)
               

               
               ova (0.516529)
               

               
               med (0.465008)
               

               
               cst (0.420109)
               

               
               elu (0.385356)
               

               
               cmu (0.372787)
               

               
               sag (0.36543)
               

               
               mgm (0.360685)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               spc (0.340097)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               nco (0.323468)
               

               
               csp (0.322373)
               

               
               mga (0.32041)
               

               
               isp (0.300752)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               eru (0.240096)
               

               
               clu (0.239292)
               

               
               nms (0.213858)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	1-2004, gnl\|bosTau2\|chr5 (43058466-43056464)
	1-2004, gnl\|Hg17\|chr22 (31581611-31583576)
	1-2004, gnl\|Mm7\|chr10 (85905740-85907711)

	aor (2.73384)
	cty (1.87344)
	fat (1.17942)
	bla (0.994777)
	sme (0.91631)
	gul (0.887942)
	tra (0.861645)
	ret (0.7724)
	spl (0.572738)
	jca (0.569801)
	csk (0.562984)
	ste (0.540833)
	sto (0.539471)
	ova (0.516529)
	med (0.465008)
	cst (0.420109)
	elu (0.385356)
	cmu (0.372787)
	sag (0.36543)
	mgm (0.360685)
	fbs (0.350693)
	rec (0.346141)
	spc (0.340097)
	cut (0.339847)
	cje (0.330469)
	nco (0.323468)
	csp (0.322373)
	mga (0.32041)
	isp (0.300752)
	ski (0.29347)
	hyp (0.285673)
	che (0.272628)
	fce (0.271592)
	kid (0.259471)
	sug (0.254582)
	eru (0.240096)
	clu (0.239292)
	nms (0.213858)
	hea (0.204499)
	fcc (0.197785)
	ldo (0.194005)
	nlu (0.191681)
	duo (0.172801)
	mcp (0.170648)
	tbr (0.154178)
	eli (0.151814)
	liv (0.146284)
	pty (0.142714)
	hlv (0.139256)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	pgl (0.118483)
	nbm (0.0993246)