Non-Coding RNA Search

Ss1.1-Pig4-TMW8020E04.5

Sequence:


               
               GAGAAATCTCTGCTTCTCCCTCTCCTTCACCACCAGGTTCTAAAGTCTTCCATCTTAGAA
AGATCCCCCCAGTCCGGCCCAGCCTCTCCATCTGTAGTACCGCCGCCTTGTGCCATTCCA
TGTCTCTCACCTGGACCATGACGGTGGCCTGAACCGTTTCTGGGGCAGTTCAGAGCTAAG
CAGCAGAAAGTGCAGATTTAGATGGGTTTGGGAGCAAGAGGTGAAGAAACAGGAAGAAAG
ACTAGGATGAGAAGTAGACCTACAGTAACAGGTCACGTTAGTTGCCGTCAGGAGATAGGC
GGCCCTGCCTAACAAAGCACAGCACTTTCCCCCCCTTAACATAATTTTATTTTACAAAAG
TGATGTTTTTATTATAATGAATTTAGAAAATAATGAATAAAACTTTACAATTCCACTACT
CAAATGGAGTTATTTTATATTTTGTTATATATCTTAGTATTTTTATATGCACGTATATTT
TTAAACAACAAATGCGGGATCGTGTTCTGTGTTTCTGTTTGATAATCATTTTCATTTAGC
AATATGTTGTGATAACCTTTTTCTGGCTATAAAATTAATCTGTGTGTCAGAAAGCTTGTG
AAAATAAAAATTACCAGTAATTACACTGCCCAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAATCTCTGCTTCTCCCTCTCCTTCACCACCAGGTTCTAAAGTCTTCCATCTTAGAA
AGATCCCCCCAGTCCGGCCCAGCCTCTCCATCTGTAGTACCGCCGCCTTGTGCCATTCCA
TGTCTCTCACCTGGACCATGACGGTGGCCTGAACCGTTTCTGGGGCAGTTCAGAGCTAAG
CAGCAGAAAGTGCAGATTTAGATGGGTTTGGGAGCAAGAGGTGAAGAAACAGGAAGAAAG
ACTAGGATGAGAAGTAGACCTACAGTAACAGGTCACGTTAGTTGCCGTCAGGAGATAGGC
GGCCCTGCCTAACAAAGCACAGCACTTTCCCCCCCTTAACATAATTTTATTTTACAAAAG
TGATGTTTTTATTATAATGAATTTAGAAAATAATGAATAAAACTTTACAATTCCACTACT
CAAATGGAGTTATTTTATATTTTGTTATATATCTTAGTATTTTTATATGCACGTATATTT
TTAAACAACAAATGCGGGATCGTGTTCTGTGTTTCTGTTTGATAATCATTTTCATTTAGC
AATATGTTGTGATAACCTTTTTCTGGCTATAAAATTAATCTGTGTGTCAGAAAGCTTGTG
AAAATAAAAATTACCAGTAATTACACTGCCCAAAGA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-636, gnl|bosTau2|chr19 (17945513-17944877)
               

               
               2-636, gnl|Hg17|chr17 (2261068-2259180)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-636, gnl|bosTau2|chr19 (17945513-17944877)
               

               
               2-636, gnl|Hg17|chr17 (2261068-2259180)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               jca (0.11396)

	2-636, gnl\|bosTau2\|chr19 (17945513-17944877)
	2-636, gnl\|Hg17\|chr17 (2261068-2259180)

	amn (0.417711)
	fbs (0.175346)
	lun (0.150489)
	lnt (0.142308)
	jca (0.11396)