Ss1.1-Pig4-TMW8020E09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCCTTCCCTGGTGGTGCTGGAGACGATCCACACTGCCAGCTGCTGGGAGCCCAGCGTT CCCCCCCGCTGAGCCCGCTTCAGTCTCTGAAGCCAGGCTCGGACACCTGTTCCCCCTTCC CTCCGGTCCCAACACTTGGAACCCAGCCCTAGGTCCCTTCCCTTAGGTGCCCGGTGTCTT CCCAGGGCCCCTGGTCCTGGGCCATGGCCCAGAGGGAGGGCCTGGGGCCTCGGGGGCTGG CGGCTGTGGCCACTTTGATTTCGCTTGGATTGTTCCAGAATGGGATGGGAGCCAAAGGGG ACGCAGTCTCCTGTGGCATAGTCCCCCAAGCACAAGGACGGATTACAGGCGGTAGCAATT CAGACCCTGGCCAGTGGCCCTGGCAGGTCAGCATCAACTACAATGGCGAACACGTGTGTG GCGGCTCTCTCGTGTCTGACCAGTGGGTGTTGTCGGCTGCTCACTGCTTCCCAAGGGATC ACAGCACCAGCGCCTACGAGGTGAAGCTGGGGGCCCACCAGCTGGACAGTTTCAGCTCCA GCATGACAGTCCGAACCGTGGCGCAGGTCATTTCCCACCCCAGCTACCTCCAGGAAGGCT CCGAGGGGGACATCGCACTCCTCCAGCTCAGCAGCCCTGTCACCTTCTCCCGCTACATCT GGCCCATCTGTCTCCCCGCGGCCAACGCCTCCTTTCCCAACGGCCTCCAGTGCACCGTCA CTGGATGGGGCCACGTGGCCCCCTCAGTGAGCCTCCAGCGCCCCAGGACCCTGCAGCAAC TTGAGGTGCCGCTGATCAGTCGTGAGACCTGTAACTGCCTATATAACATCGACGCCAACC CCGACGAGCCCCATTTTATCCAGCAGGACATGCTGTGCGCCGGCTACGTGAAGGGGGGCA AGGACGCCTGCCAGGGTGACTCTGGGGGCCCCCTCTCCTGCCCAGCAGGGGGCCACTGGT ACCTGGCAGGCATCGTAAGCTGGGGTGATGCCTGTGGGGCCCCCAACAGGCCCGGTGTGT ACACTCTGACTTCCACCTACGCCTCCTGGATTCAACACAATGTGGCAGAGCTCCAGCCTC AAGTGGTACCCCACATCGGGGAGTCGGAGCCTGACAGCGACCTCTGCAGCAACTACGGCG CCCTCAACGCTGCCCCCGCCTGGGGCTTGGCGCGGCCCATCCTTCTGCTGCCACTAGGCC TGACCCTGGGCCTCCTCCGGCCACGGCTCGAGCACTGAGCTACTTACCTGGGAGCTGACC TGGTTCCGGGACCTCCACGTCACTCCTGGGGACAGACGCCTGTTCCCAGGATGCCAGGCC CCGCCCCCAACACTCTGGGCCTGGAGCCTGATTGAGCCACTCCTTCCTCCCCCGACCCTG TGGGAGTTGAGGGCACCATCCTGACCTTGGAGCCCACCCTTCTGGGCTGTTCTTTGGGAC TATAACCTCCACCACGAGGTAGTTTACTACCTGTGGTGCTAGAGCCTTTGGCTGCCTCCA TCTGTCCACAAGCCTACAGGCTGGGCTCCCATGGAGCTCCCAAGGGCCCTCAGCTAGGAA ACAGGCCCTGGCTCCCCACCCTGTTTCTAGAAGATTGCCCAGCTGATCACTGCGGATGGG CCTGCTCTGCCTGATGAGCCCCCCATGGCTTCGCCCTGCTGCTGTGGTCTGTACTGGGCT GCCTCCGGGCAGCACGTCTTCACGGACAGACAAGACCCCAATCTTGCCCCAACGGCTGCC ATCCCCCCCCCCCCCGGCCCCCCGAGCCCTTGACTCCTGGCCTCCGGAGGAATGAGCCCC CACCGGAACTGGGCTCTCACTTACAGCTGGGGTGCGGGTGAGATGCAGCCAGAAGGAATA AAATGTTCTGAGCACAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCCTTCCCTGGTGGTGCTGGAGACGATCCACACTGCCAGCTGCTGGGAGCCCAGCGTT CCCCCCCGCTGAGCCCGCTTCAGTCTCTGAAGCCAGGCTCGGACACCTGTTCCCCCTTCC CTCCGGTCCCAACACTTGGAACCCAGCCCTAGGTCCCTTCCCTTAGGTGCCCGGTGTCTT CCCAGGGCCCCTGGTCCTGGGCCATGGCCCAGAGGGAGGGCCTGGGGCCTCGGGGGCTGG CGGCTGTGGCCACTTTGATTTCGCTTGGATTGTTCCAGAATGGGATGGGAGCCAAAGGGG ACGCAGTCTCCTGTGGCATAGTCCCCCAAGCACAAGGACGGATTACAGGCGGTAGCAATT CAGACCCTGGCCAGTGGCCCTGGCAGGTCAGCATCAACTACAATGGCGAACACGTGTGTG GCGGCTCTCTCGTGTCTGACCAGTGGGTGTTGTCGGCTGCTCACTGCTTCCCAAGGGATC ACAGCACCAGCGCCTACGAGGTGAAGCTGGGGGCCCACCAGCTGGACAGTTTCAGCTCCA GCATGACAGTCCGAACCGTGGCGCAGGTCATTTCCCACCCCAGCTACCTCCAGGAAGGCT CCGAGGGGGACATCGCACTCCTCCAGCTCAGCAGCCCTGTCACCTTCTCCCGCTACATCT GGCCCATCTGTCTCCCCGCGGCCAACGCCTCCTTTCCCAACGGCCTCCAGTGCACCGTCA CTGGATGGGGCCACGTGGCCCCCTCAGTGAGCCTCCAGCGCCCCAGGACCCTGCAGCAAC TTGAGGTGCCGCTGATCAGTCGTGAGACCTGTAACTGCCTATATAACATCGACGCCAACC CCGACGAGCCCCATTTTATCCAGCAGGACATGCTGTGCGCCGGCTACGTGAAGGGGGGCA AGGACGCCTGCCAGGGTGACTCTGGGGGCCCCCTCTCCTGCCCAGCAGGGGGCCACTGGT ACCTGGCAGGCATCGTAAGCTGGGGTGATGCCTGTGGGGCCCCCAACAGGCCCGGTGTGT ACACTCTGACTTCCACCTACGCCTCCTGGATTCAACACAATGTGGCAGAGCTCCAGCCTC AAGTGGTACCCCACATCGGGGAGTCGGAGCCTGACAGCGACCTCTGCAGCAACTACGGCG CCCTCAACGCTGCCCCCGCCTGGGGCTTGGCGCGGCCCATCCTTCTGCTGCCACTAGGCC TGACCCTGGGCCTCCTCCGGCCACGGCTCGAGCACTGAGCTACTTACCTGGGAGCTGACC TGGTTCCGGGACCTCCACGTCACTCCTGGGGACAGACGCCTGTTCCCAGGATGCCAGGCC CCGCCCCCAACACTCTGGGCCTGGAGCCTGATTGAGCCACTCCTTCCTCCCCCGACCCTG TGGGAGTTGAGGGCACCATCCTGACCTTGGAGCCCACCCTTCTGGGCTGTTCTTTGGGAC TATAACCTCCACCACGAGGTAGTTTACTACCTGTGGTGCTAGAGCCTTTGGCTGCCTCCA TCTGTCCACAAGCCTACAGGCTGGGCTCCCATGGAGCTCCCAAGGGCCCTCAGCTAGGAA ACAGGCCCTGGCTCCCCACCCTGTTTCTAGAAGATTGCCCAGCTGATCACTGCGGATGGG CCTGCTCTGCCTGATGAGCCCCCCATGGCTTCGCCCTGCTGCTGTGGTCTGTACTGGGCT GCCTCCGGGCAGCACGTCTTCACGGACAGACAAGACCCCAATCTTGCCCCAACGGCTGCC ATCCCCCCCCCCCCCGGCCCCCCGAGCCCTTGACTCCTGGCCTCCGGAGGAATGAGCCCC CACCGGAACTGGGCTCTCACTTACAGCTGGGGTGCGGGTGAGATGCAGCCAGAAGGAATA AAATGTTCTGAGCACAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 140-751, - strand, RNAz p=0.999857 | |
| 912-1031, - strand, RNAz p=0.767521 | |
| 1464-1616, - strand, RNAz p=0.99707 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 140-751, - strand, RNAz p=0.999857 | |
| 912-1031, - strand, RNAz p=0.767521 | |
| 1464-1616, - strand, RNAz p=0.99707 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 8-289, gnl|bosTau2|chr25 (22996876-22996584) | |
| 8-289, gnl|Hg17|chr16 (31054552-31054235) | |
| 8-289, gnl|Mm7|chr7 (124026666-124026355) | |
| 303-476, gnl|bosTau2|chr25 (22994575-22994408) | |
| 303-476, gnl|canFam2|chr6 (20123278-20123066) | |
| 303-476, gnl|danRer3|chr21 (12615227-12615057) | |
| 303-476, gnl|dasNov1|scaffold_52323 (11100-11315) | |
| 303-476, gnl|echTel1|scaffold_162340 (3403-3195) | |
| 303-476, gnl|fr1|chrUn (180927753-180927593) | |
| 303-476, gnl|hg17|chr16 (31052017-31052206) | |
| 303-476, gnl|Hg17|chr16 (31052214-31052047) | |
| 303-476, gnl|loxAfr1|scaffold_44435 (20583-20376) | |
| 303-476, gnl|mm7|chr7 (124024322-124024525) | |
| 303-476, gnl|Mm7|chr7 (124024533-124024366) | |
| 303-476, gnl|monDom2|scaffold_17 (9162920-9163100) | |
| 303-476, gnl|oryCun1|scaffold_211153 (76698-76502) | |
| 303-476, gnl|panTro1|chr18 (31844531-31844720) | |
| 303-476, gnl|rheMac2|chr20 (29226868-29227057) | |
| 303-476, gnl|rn3|chr1 (187362778-187362984) | |
| 303-476, gnl|tetNig1|chr6 (2664438-2664276) | |
| 495-751, gnl|bosTau2|chr25 (22994160-22993903) | |
| 495-751, gnl|Hg17|chr16 (31051756-31051499) | |
| 495-751, gnl|Mm7|chr7 (124023809-124023552) | |
| 912-1616, gnl|bosTau2|chr25 (22993524-22992816) | |
| 912-1616, gnl|Hg17|chr16 (31051160-31050491) | |
| 912-1616, gnl|Mm7|chr7 (124023201-124022566) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 8-289, gnl|bosTau2|chr25 (22996876-22996584) | |
| 8-289, gnl|Hg17|chr16 (31054552-31054235) | |
| 8-289, gnl|Mm7|chr7 (124026666-124026355) | |
| 303-476, gnl|bosTau2|chr25 (22994575-22994408) | |
| 303-476, gnl|canFam2|chr6 (20123278-20123066) | |
| 303-476, gnl|danRer3|chr21 (12615227-12615057) | |
| 303-476, gnl|dasNov1|scaffold_52323 (11100-11315) | |
| 303-476, gnl|echTel1|scaffold_162340 (3403-3195) | |
| 303-476, gnl|fr1|chrUn (180927753-180927593) | |
| 303-476, gnl|hg17|chr16 (31052017-31052206) | |
| 303-476, gnl|Hg17|chr16 (31052214-31052047) | |
| 303-476, gnl|loxAfr1|scaffold_44435 (20583-20376) | |
| 303-476, gnl|mm7|chr7 (124024322-124024525) | |
| 303-476, gnl|Mm7|chr7 (124024533-124024366) | |
| 303-476, gnl|monDom2|scaffold_17 (9162920-9163100) | |
| 303-476, gnl|oryCun1|scaffold_211153 (76698-76502) | |
| 303-476, gnl|panTro1|chr18 (31844531-31844720) | |
| 303-476, gnl|rheMac2|chr20 (29226868-29227057) | |
| 303-476, gnl|rn3|chr1 (187362778-187362984) | |
| 303-476, gnl|tetNig1|chr6 (2664438-2664276) | |
| 495-751, gnl|bosTau2|chr25 (22994160-22993903) | |
| 495-751, gnl|Hg17|chr16 (31051756-31051499) | |
| 495-751, gnl|Mm7|chr7 (124023809-124023552) | |
| 912-1616, gnl|bosTau2|chr25 (22993524-22992816) | |
| 912-1616, gnl|Hg17|chr16 (31051160-31050491) | |
| 912-1616, gnl|Mm7|chr7 (124023201-124022566) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| jej (0.593531) | |
| ill (0.526778) | |
| nje (0.49776) | |
| col (0.390016) | |
| nco (0.323468) | |
| pty (0.285429) | |
| cga (0.279096) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| cje (0.165235) | |
| ute (0.132784) | |
| cov (0.132153) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.593531) | |
| ill (0.526778) | |
| nje (0.49776) | |
| col (0.390016) | |
| nco (0.323468) | |
| pty (0.285429) | |
| cga (0.279096) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| cje (0.165235) | |
| ute (0.132784) | |
| cov (0.132153) |