Ss1.1-Pig4-TMW8020E19.5
|
CCCAAGCTGGCGGCGCCCGGAGCCTTCGCTCTTGCCGTGGACCTGCGATGAATTAAGGCC
AGGAACTCCGCACCATGTCGAAGCTCAGCCGGGCCACTCGGGCCCTCAAGAAGCCCGAGG
CCAGCGGCATGATCCGGGCCATCGTGCGGGCAGGCCAGGCCAGGCCCGGACCCCCACTCG
GCCCCATCCTGGGTCAGCGAGGCGTTTCCATCAACCAGTTCTGTAAGGAGTTCAACGAAA
AGACAAAGGACATCAAAGAAGGCATTCCTCTGCCCACCAAGATTTTTGTGAAGCCCGACA
GGACATTTGAAATCAAAATTGGTCAACCCACTGTTTCCTACTTCCTGAAGGCTGCTGCCG
GGATTGAGAAGGGGGCGCGGCACACAGGAAAAGAGGTGGCAGGCCTGGTGACACTGAAGC
ACGTGTACGAGATCGCCCGCGTCAAAGCTCAGGATGACGCCTTCGCCCTGCAGGACGTGC
CGCTGTCCTCTGTTGTTCGCTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGTGTGG
TGAAAGACCTCAGCTCAGAAGAGCTGGCAGCTTTCCAGAAGGAGCGCGCCCTGTTCCTGG
CTGCTCAGAGAGAGGCAGATTTGGCAGCCCAGGCAGAAGCTGCCAAGAAGTGACCCCCGA
CCCCCATCCTCCAGGCGTTTGAAGGGAGCTAGTTGTTGTATTTTTCTGACTTTAAATTAC
ATATTTTTATAGGCATGGCTGTATCACAGGATCAAACCTGAATAAATGTCATTTGTCACT
CAAAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCA
GCGCCTCAACAACGCTTTTTTCTCACAGACCACCAGGGGGCGCGTGACCTGGAAGGTTCC
AGAGCCCTGCCACCGGCGGGCCCA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CCCAAGCTGGCGGCGCCCGGAGCCTTCGCTCTTGCCGTGGACCTGCGATGAATTAAGGCC
AGGAACTCCGCACCATGTCGAAGCTCAGCCGGGCCACTCGGGCCCTCAAGAAGCCCGAGG
CCAGCGGCATGATCCGGGCCATCGTGCGGGCAGGCCAGGCCAGGCCCGGACCCCCACTCG
GCCCCATCCTGGGTCAGCGAGGCGTTTCCATCAACCAGTTCTGTAAGGAGTTCAACGAAA
AGACAAAGGACATCAAAGAAGGCATTCCTCTGCCCACCAAGATTTTTGTGAAGCCCGACA
GGACATTTGAAATCAAAATTGGTCAACCCACTGTTTCCTACTTCCTGAAGGCTGCTGCCG
GGATTGAGAAGGGGGCGCGGCACACAGGAAAAGAGGTGGCAGGCCTGGTGACACTGAAGC
ACGTGTACGAGATCGCCCGCGTCAAAGCTCAGGATGACGCCTTCGCCCTGCAGGACGTGC
CGCTGTCCTCTGTTGTTCGCTCCATCATTGGCTCTGCCCGTTCCCTGGGCATTCGTGTGG
TGAAAGACCTCAGCTCAGAAGAGCTGGCAGCTTTCCAGAAGGAGCGCGCCCTGTTCCTGG
CTGCTCAGAGAGAGGCAGATTTGGCAGCCCAGGCAGAAGCTGCCAAGAAGTGACCCCCGA
CCCCCATCCTCCAGGCGTTTGAAGGGAGCTAGTTGTTGTATTTTTCTGACTTTAAATTAC
ATATTTTTATAGGCATGGCTGTATCACAGGATCAAACCTGAATAAATGTCATTTGTCACT
CAAAAAAAAAAAAAAAAAACTCGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCA
GCGCCTCAACAACGCTTTTTTCTCACAGACCACCAGGGGGCGCGTGACCTGGAAGGTTCC
AGAGCCCTGCCACCGGCGGGCCCA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-197, gnl|bosTau2|chr29 (40046189-40045994) |
|
1-197, gnl|Hg17|chr11 (65962874-65962679) |
|
1-197, gnl|Mm7|chr19 (4857129-4857321) |
| |
|
385-547, gnl|bosTau2|chr29 (40044653-40044491) |
|
385-547, gnl|canFam2|chr18 (53917706-53917512) |
|
385-547, gnl|danRer3|chr8 (37930686-37930500) |
|
385-547, gnl|dasNov1|scaffold_78135 (3390-3196) |
|
385-547, gnl|echTel1|scaffold_280076 (44365-44172) |
|
385-547, gnl|fr1|chrUn (186407513-186407698) |
|
385-547, gnl|hg17|chr11 (65961132-65961325) |
|
385-547, gnl|Hg17|chr11 (65961313-65961151) |
|
385-547, gnl|mm7|chr19 (4858492-4858299) |
|
385-547, gnl|Mm7|chr19 (4858309-4858471) |
|
385-547, gnl|monDom2|scaffold_107 (2552703-2552517) |
|
385-547, gnl|oryCun1|scaffold_124658 (9429-9274) |
|
385-547, gnl|panTro1|chr9 (67208434-67208627) |
|
385-547, gnl|rheMac2|chr14 (8015226-8015033) |
|
385-547, gnl|rn3|chr1 (207735181-207734988) |
|
385-547, gnl|tetNig1|chr1 (8279756-8279928) |
| |
|
548-695, gnl|bosTau2|chr29 (40043120-40042973) |
|
548-695, gnl|Hg17|chr11 (65960159-65960013) |
|
548-695, gnl|Mm7|chr19 (4859480-4859627) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-197, gnl|bosTau2|chr29 (40046189-40045994) |
|
1-197, gnl|Hg17|chr11 (65962874-65962679) |
|
1-197, gnl|Mm7|chr19 (4857129-4857321) |
| |
|
385-547, gnl|bosTau2|chr29 (40044653-40044491) |
|
385-547, gnl|canFam2|chr18 (53917706-53917512) |
|
385-547, gnl|danRer3|chr8 (37930686-37930500) |
|
385-547, gnl|dasNov1|scaffold_78135 (3390-3196) |
|
385-547, gnl|echTel1|scaffold_280076 (44365-44172) |
|
385-547, gnl|fr1|chrUn (186407513-186407698) |
|
385-547, gnl|hg17|chr11 (65961132-65961325) |
|
385-547, gnl|Hg17|chr11 (65961313-65961151) |
|
385-547, gnl|mm7|chr19 (4858492-4858299) |
|
385-547, gnl|Mm7|chr19 (4858309-4858471) |
|
385-547, gnl|monDom2|scaffold_107 (2552703-2552517) |
|
385-547, gnl|oryCun1|scaffold_124658 (9429-9274) |
|
385-547, gnl|panTro1|chr9 (67208434-67208627) |
|
385-547, gnl|rheMac2|chr14 (8015226-8015033) |
|
385-547, gnl|rn3|chr1 (207735181-207734988) |
|
385-547, gnl|tetNig1|chr1 (8279756-8279928) |
| |
|
548-695, gnl|bosTau2|chr29 (40043120-40042973) |
|
548-695, gnl|Hg17|chr11 (65960159-65960013) |
|
548-695, gnl|Mm7|chr19 (4859480-4859627) |
|
jej (0.296765) |
|
ese (0.253004) |
|
fli (0.202881) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
ill (0.175593) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cag (0.151194) |
|
fat (0.147427) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cly (0.120642) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
jej (0.296765) |
|
ese (0.253004) |
|
fli (0.202881) |
|
col (0.195008) |
|
nlu (0.191681) |
|
nep (0.183925) |
|
ill (0.175593) |
|
nje (0.16592) |
|
csp (0.161186) |
|
cag (0.151194) |
|
fat (0.147427) |
|
ssp (0.13552) |
|
ste (0.135208) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cly (0.120642) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
