Non-Coding RNA Search

Ss1.1-Pig4-TMW8020G14.5

Sequence:


               
               TAAAACTAGGGGAAAAGGGTATGTGTATATTGTAAACTATGGATGTTCAATGCTCAAAGA
GGTTACGTCAGTGAAGTAGCCTGTTCATCACCAGTACCGGTGTACCACTACACGAATAGG
TTTGCCAAATCCTTGTAATAACATCTTAATTTTAGACAATCATGTCACTGTTTTTTAATG
TTTAATTTTGTGTGTGTGTTGCGTGTATCATGTATTTATTTGTTGGCAAACTATTGTTTG
TTGATTAAAATAGCACTGTTCCAGTCAGCCACTACTTTCTGACATCCGAGGCACACCCCT
TTCTGAATTTCAAGGACCAAGGTGACTCGACCTGTGTATGGGAGTGCCAAATGGTGTTTG
GCTTTTCGTAACATTCCTTTTTGTTGTTGTTTTGTTTTCCTTCTTAATGAGCTAACTACG
AATAGATGCAACTTAGTTTTTGTAATACTGAAATTGATTCAGTTGTATAAACGATTATAA
TTTCTTTCATGAAAGCATGATTCTTCTGATTAAAAACTGTACCCCATATTTTATGCTGGT
TGTCTGCAAGCTTGTGCGATGTTATGTTCATGTTAATCCTATTTGTAAAATGAAGTGTTC
CAGACCTTATGTTAAAAGAGAGACGTAAATAACAGACTGTATTCAGTTATTTTGCCCTTT
ATTGAGGAACCAGATTTGTTTTCTCTTTGTTTGTAATCTCATTTTGAAATAATCAGCAAG
TTGAGGTACTTTCTTCAAATGCTTTGTACAATATAAACTGTTATGCCTTTCAGTGCATTA
CTATGGGAGGAGCAACTAAAAAATAAAGACTTATAAAAATGGTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAACTAGGGGAAAAGGGTATGTGTATATTGTAAACTATGGATGTTCAATGCTCAAAGA
GGTTACGTCAGTGAAGTAGCCTGTTCATCACCAGTACCGGTGTACCACTACACGAATAGG
TTTGCCAAATCCTTGTAATAACATCTTAATTTTAGACAATCATGTCACTGTTTTTTAATG
TTTAATTTTGTGTGTGTGTTGCGTGTATCATGTATTTATTTGTTGGCAAACTATTGTTTG
TTGATTAAAATAGCACTGTTCCAGTCAGCCACTACTTTCTGACATCCGAGGCACACCCCT
TTCTGAATTTCAAGGACCAAGGTGACTCGACCTGTGTATGGGAGTGCCAAATGGTGTTTG
GCTTTTCGTAACATTCCTTTTTGTTGTTGTTTTGTTTTCCTTCTTAATGAGCTAACTACG
AATAGATGCAACTTAGTTTTTGTAATACTGAAATTGATTCAGTTGTATAAACGATTATAA
TTTCTTTCATGAAAGCATGATTCTTCTGATTAAAAACTGTACCCCATATTTTATGCTGGT
TGTCTGCAAGCTTGTGCGATGTTATGTTCATGTTAATCCTATTTGTAAAATGAAGTGTTC
CAGACCTTATGTTAAAAGAGAGACGTAAATAACAGACTGTATTCAGTTATTTTGCCCTTT
ATTGAGGAACCAGATTTGTTTTCTCTTTGTTTGTAATCTCATTTTGAAATAATCAGCAAG
TTGAGGTACTTTCTTCAAATGCTTTGTACAATATAAACTGTTATGCCTTTCAGTGCATTA
CTATGGGAGGAGCAACTAAAAAATAAAGACTTATAAAAATGGTTAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-231, + strand, RNAz p=0.803333

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-231, + strand, RNAz p=0.803333

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX640908, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX640908, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-825, gnl|bosTau2|chr1 (64016422-64017250)
               

               
               1-825, gnl|Hg17|chr3 (170284816-170283994)
               

               
               1-825, gnl|Mm7|chr3 (29754622-29753782)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-825, gnl|bosTau2|chr1 (64016422-64017250)
               

               
               1-825, gnl|Hg17|chr3 (170284816-170283994)
               

               
               1-825, gnl|Mm7|chr3 (29754622-29753782)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               rec (0.346141)
               

               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               lin (0.291206)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               spl (0.143184)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	1-825, gnl\|bosTau2\|chr1 (64016422-64017250)
	1-825, gnl\|Hg17\|chr3 (170284816-170283994)
	1-825, gnl\|Mm7\|chr3 (29754622-29753782)

	rec (0.346141)
	lin (0.291206)
	aor (0.195274)
	col (0.195008)
	gul (0.177588)
	spl (0.143184)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	eje (0.0988338)