Ss1.1-Pig4-TMW8020G23.5
|
TTGATAGACGTTATCAAAGGTCAGTTTGAAACGTACCTGCGGGACTGCCCAGACCCCTGT
ATAGGTTGGTGAGCACACGCCTGGATTCCAGGATGCGCCCTCTGTGACATCAGGACTGGA
GCTCACACGTGGCTGAGCAGTGCAGCCGTCTCATCTCCTTGCAAAGACTGAGACTCTGGG
CAGGTTCTCTTTGAGGCATGAGCTTGTCCTTTTCAGTATGTTTACACGTTATAGGATGTC
TTGGCTGTGATGATTGATTATTCTTATATAGGTAGTTTATGTCTTTAGGTGGAGCACAAC
AATCAGCCAGAATTTACTGGTTTTTTTTTTTTTTTTTTTTCACTCCGACATGTGGGGATG
GGGATGGGCAGGTAAACTACTGGAGGACCCACCTCCGTGTAATAAAGCAGGATTCTCTGT
GGGCATTGAATCTTGTACATTCGTGTATTAGTTAAACAGTCCACATTATTCAGTTTTTCA
CTTTTATCTACATATTTGTATGATTTTCTATCTTTTCTGCCTGGTTCTAACTCCTATTAA
AATTAACATAGCATTGCTTTGCTGACAGCAGAGTATTTCACTAATTTTGATTGAAGGGTG
ATGAGACAGCCATTCAGCTGTATGTTCCTCCTAATGGGCAACTCATGGGCTTTTGACTCT
GAATAGAAGTACTTGTGGGGGTTCATGATGTAACCAGTCTTTCATACTCAGAATTGAAGT
GTTTCCTTTTTTATAATTAGCCTACCTCCCATTAACCCCAGGAAGTTATTAAATAAATTT
TAAAACCAGTCCCAGGTTTTGTGAATCAGTAGTAAATAATCAGGTCAGACACTTGTGGAA
AATGAGGAGGGAACCACTACTTTAAAATCTCTTACGTATAATTCATTTACATAGATTTTT
AGTTCTTCTGATCAACATGTATAGTTTTTTTTAAATTGAGTTACAAAAAAAAAATCTCAG
AAATCTATTTAGGAGAAGTATGAATAGAACTTATTAACCTTTCAGTCTTTCACAATTAGT
TGTGAAATGTATGTCAGTGGGGCAACACGGTGGCCACTTCATTTCTGTATCATGTCAGTT
GTGTTCACGAGAGTCAATAAACAGATTGGAAGAAGTAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTGATAGACGTTATCAAAGGTCAGTTTGAAACGTACCTGCGGGACTGCCCAGACCCCTGT
ATAGGTTGGTGAGCACACGCCTGGATTCCAGGATGCGCCCTCTGTGACATCAGGACTGGA
GCTCACACGTGGCTGAGCAGTGCAGCCGTCTCATCTCCTTGCAAAGACTGAGACTCTGGG
CAGGTTCTCTTTGAGGCATGAGCTTGTCCTTTTCAGTATGTTTACACGTTATAGGATGTC
TTGGCTGTGATGATTGATTATTCTTATATAGGTAGTTTATGTCTTTAGGTGGAGCACAAC
AATCAGCCAGAATTTACTGGTTTTTTTTTTTTTTTTTTTTCACTCCGACATGTGGGGATG
GGGATGGGCAGGTAAACTACTGGAGGACCCACCTCCGTGTAATAAAGCAGGATTCTCTGT
GGGCATTGAATCTTGTACATTCGTGTATTAGTTAAACAGTCCACATTATTCAGTTTTTCA
CTTTTATCTACATATTTGTATGATTTTCTATCTTTTCTGCCTGGTTCTAACTCCTATTAA
AATTAACATAGCATTGCTTTGCTGACAGCAGAGTATTTCACTAATTTTGATTGAAGGGTG
ATGAGACAGCCATTCAGCTGTATGTTCCTCCTAATGGGCAACTCATGGGCTTTTGACTCT
GAATAGAAGTACTTGTGGGGGTTCATGATGTAACCAGTCTTTCATACTCAGAATTGAAGT
GTTTCCTTTTTTATAATTAGCCTACCTCCCATTAACCCCAGGAAGTTATTAAATAAATTT
TAAAACCAGTCCCAGGTTTTGTGAATCAGTAGTAAATAATCAGGTCAGACACTTGTGGAA
AATGAGGAGGGAACCACTACTTTAAAATCTCTTACGTATAATTCATTTACATAGATTTTT
AGTTCTTCTGATCAACATGTATAGTTTTTTTTAAATTGAGTTACAAAAAAAAAATCTCAG
AAATCTATTTAGGAGAAGTATGAATAGAACTTATTAACCTTTCAGTCTTTCACAATTAGT
TGTGAAATGTATGTCAGTGGGGCAACACGGTGGCCACTTCATTTCTGTATCATGTCAGTT
GTGTTCACGAGAGTCAATAAACAGATTGGAAGAAGTAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-646, gnl|bosTau2|chr27 (12267312-12267940) |
|
1-646, gnl|canFam2|chr16 (44259522-44260050) |
|
1-646, gnl|dasNov1|scaffold_42565 (13297-12745) |
|
1-646, gnl|echTel1|scaffold_324006 (156136-156681) |
|
1-646, gnl|hg17|chr8 (17958734-17959306) |
|
1-646, gnl|Hg17|chr8 (17959394-17958740) |
|
1-646, gnl|loxAfr1|scaffold_2329 (80192-80747) |
|
1-646, gnl|mm7|chr8 (40126494-40127003) |
|
1-646, gnl|oryCun1|scaffold_109078 (3390-3894) |
|
1-646, gnl|panTro1|chr7 (18751960-18752532) |
|
1-646, gnl|rheMac2|chr8 (17950094-17950696) |
|
1-646, gnl|rn3|chr16 (54310651-54310137) |
| |
|
699-1117, gnl|bosTau2|chr27 (12268216-12268622) |
|
699-1117, gnl|Hg17|chr8 (17958678-17958239) |
|
699-1117, gnl|Mm7|chr8 (40126436-40126088) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-646, gnl|bosTau2|chr27 (12267312-12267940) |
|
1-646, gnl|canFam2|chr16 (44259522-44260050) |
|
1-646, gnl|dasNov1|scaffold_42565 (13297-12745) |
|
1-646, gnl|echTel1|scaffold_324006 (156136-156681) |
|
1-646, gnl|hg17|chr8 (17958734-17959306) |
|
1-646, gnl|Hg17|chr8 (17959394-17958740) |
|
1-646, gnl|loxAfr1|scaffold_2329 (80192-80747) |
|
1-646, gnl|mm7|chr8 (40126494-40127003) |
|
1-646, gnl|oryCun1|scaffold_109078 (3390-3894) |
|
1-646, gnl|panTro1|chr7 (18751960-18752532) |
|
1-646, gnl|rheMac2|chr8 (17950094-17950696) |
|
1-646, gnl|rn3|chr16 (54310651-54310137) |
| |
|
699-1117, gnl|bosTau2|chr27 (12268216-12268622) |
|
699-1117, gnl|Hg17|chr8 (17958678-17958239) |
|
699-1117, gnl|Mm7|chr8 (40126436-40126088) |
|
fat (0.442282) |
|
nje (0.33184) |
|
liv (0.292569) |
|
ret (0.257467) |
|
cbe (0.239234) |
|
nms (0.213858) |
|
sag (0.182715) |
|
fty (0.17584) |
|
eye (0.170503) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
cov (0.132153) |
|
kid (0.129735) |
|
ova (0.129132) |
|
bla (0.124347) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
fat (0.442282) |
|
nje (0.33184) |
|
liv (0.292569) |
|
ret (0.257467) |
|
cbe (0.239234) |
|
nms (0.213858) |
|
sag (0.182715) |
|
fty (0.17584) |
|
eye (0.170503) |
|
csp (0.161186) |
|
lnt (0.142308) |
|
lyg (0.133103) |
|
ute (0.132784) |
|
cov (0.132153) |
|
kid (0.129735) |
|
ova (0.129132) |
|
bla (0.124347) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
