Ss1.1-Pig4-TMW8020H13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCTCCTTAAAAAGCCCTCAAGAGCCTCACCATCATTATTCAGCCATTGAAAGGAATA ATTTAATGAGGCTTTCTCAGACCATACCATTTACACCAATCCAACTGTTTGCAGGAGAAG AAGTAACTGTCTACAGGCTGGAGGAGAGTTCCCCTTTGAACTTGGATAAAAGCATGTCTT CTTGGTCCCAGAGAGGGAGATCTGCAATGATCCAAGTGTTGTCCCAAGAGGAGATGGATG GTGGCCTTCGCAAAGCCATGAGAGTCATTAGCACCTGGTCTGAGGGTGATGTCCTCAAGC CGGGGCACGTTTTCATTGTGAAGTCCTTTCTGCCTGAGGTTGTGCAGACATGGCACAAAA TCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTCAGGGAAATTCAACAACAAAGAGCTG CTCAAAAACTGATCTATACCTTCAACCAAGTGAAACCACAAACCATTCCCTACACTCCAA GGTTCCTGGAAGTTTTCTTAATCTACTGTCATTCAGCCAACCAGTGGTTGACTATTGAGA AGTATATGACTGGGGAGTTCCGGAAGTACAACAACAACAACGGTGATGAAATTGCCCCCA GCAACACCTTGGAGGAGCTGATGTTGGCTTTCTCTCACTGGACCTATGAGTACACTCGGG GAGAGCTGCTGGTTTTAGATTTACAAGGTGTTGGAGAAAATTTGACAGATCCATCTGTTA TAAAACCTGAAGACAAACAATCAAGAGGAATGGTGTTTGGACCAGCCAATTTAGGGGAAG ATGCAATTAGAAACTTCATTGCAAAACATCGTTGCAACTCCTGCTGCCGGAAGCTCAAAC TCCCGGATTTAAAAAGAAATGACTATTGCCCTGGAAGGATAAATTCTGCCTTTGGACTGG AAATCAACATAGAACCAGCTGAGGAGACTGAGGAGACTCCAGGAGGGGAAGAGGGTAGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCTCCTTAAAAAGCCCTCAAGAGCCTCACCATCATTATTCAGCCATTGAAAGGAATA ATTTAATGAGGCTTTCTCAGACCATACCATTTACACCAATCCAACTGTTTGCAGGAGAAG AAGTAACTGTCTACAGGCTGGAGGAGAGTTCCCCTTTGAACTTGGATAAAAGCATGTCTT CTTGGTCCCAGAGAGGGAGATCTGCAATGATCCAAGTGTTGTCCCAAGAGGAGATGGATG GTGGCCTTCGCAAAGCCATGAGAGTCATTAGCACCTGGTCTGAGGGTGATGTCCTCAAGC CGGGGCACGTTTTCATTGTGAAGTCCTTTCTGCCTGAGGTTGTGCAGACATGGCACAAAA TCTTCCAGGAGAGCACTGTGCTTCATCTTTGCCTCAGGGAAATTCAACAACAAAGAGCTG CTCAAAAACTGATCTATACCTTCAACCAAGTGAAACCACAAACCATTCCCTACACTCCAA GGTTCCTGGAAGTTTTCTTAATCTACTGTCATTCAGCCAACCAGTGGTTGACTATTGAGA AGTATATGACTGGGGAGTTCCGGAAGTACAACAACAACAACGGTGATGAAATTGCCCCCA GCAACACCTTGGAGGAGCTGATGTTGGCTTTCTCTCACTGGACCTATGAGTACACTCGGG GAGAGCTGCTGGTTTTAGATTTACAAGGTGTTGGAGAAAATTTGACAGATCCATCTGTTA TAAAACCTGAAGACAAACAATCAAGAGGAATGGTGTTTGGACCAGCCAATTTAGGGGAAG ATGCAATTAGAAACTTCATTGCAAAACATCGTTGCAACTCCTGCTGCCGGAAGCTCAAAC TCCCGGATTTAAAAAGAAATGACTATTGCCCTGGAAGGATAAATTCTGCCTTTGGACTGG AAATCAACATAGAACCAGCTGAGGAGACTGAGGAGACTCCAGGAGGGGAAGAGGGTAGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 270-389, + strand, RNAz p=0.969143 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 270-389, + strand, RNAz p=0.969143 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 111-418, gnl|bosTau2|chr8 (24096713-24096406) | |
| 111-418, gnl|Hg17|chr9 (74584480-74584165) | |
| 111-418, gnl|Mm7|chr19 (18576767-18577082) | |
| 466-695, gnl|bosTau2|chr8 (24095216-24094989) | |
| 466-695, gnl|canFam2|chr1 (86491245-86491026) | |
| 466-695, gnl|danRer3|chr5 (13817854-13818064) | |
| 466-695, gnl|dasNov1|scaffold_4022 (53718-53937) | |
| 466-695, gnl|echTel1|scaffold_307786 (82482-82263) | |
| 466-695, gnl|fr1|chrUn (145168821-145168608) | |
| 466-695, gnl|galGal2|chrZ (17231824-17232043) | |
| 466-695, gnl|hg17|chr9 (74582867-74583086) | |
| 466-695, gnl|Hg17|chr9 (74583094-74582869) | |
| 466-695, gnl|loxAfr1|scaffold_29079 (36247-36029) | |
| 466-695, gnl|mm7|chr19 (18578720-18578497) | |
| 466-695, gnl|Mm7|chr19 (18578486-18578712) | |
| 466-695, gnl|monDom2|scaffold_17 (12509029-12508810) | |
| 466-695, gnl|oryCun1|scaffold_183468 (10950-10731) | |
| 466-695, gnl|panTro1|chr11 (58414815-58415034) | |
| 466-695, gnl|rheMac2|chr15 (83517973-83518192) | |
| 466-695, gnl|rn3|chr1 (222651891-222651668) | |
| 466-695, gnl|tetNig1|chrUn_random (6181520-6181730) | |
| 466-695, gnl|xenTro1|scaffold_642 (356455-356243) | |
| 740-846, gnl|bosTau2|chr8 (24083169-24083063) | |
| 740-846, gnl|canFam2|chr1 (86502783-86502668) | |
| 740-846, gnl|danRer3|chr5 (13816836-13816939) | |
| 740-846, gnl|dasNov1|scaffold_12829 (42201-42086) | |
| 740-846, gnl|echTel1|scaffold_1403 (4410-4525) | |
| 740-846, gnl|fr1|chrUn (145169159-145169044) | |
| 740-846, gnl|galGal2|chrZ (17226254-17226369) | |
| 740-846, gnl|hg17|chr9 (74572707-74572822) | |
| 740-846, gnl|Hg17|chr9 (74572815-74572709) | |
| 740-846, gnl|loxAfr1|scaffold_16757 (8647-8759) | |
| 740-846, gnl|mm7|chr19 (18589977-18589862) | |
| 740-846, gnl|Mm7|chr19 (18589867-18589973) | |
| 740-846, gnl|monDom2|scaffold_17 (12524062-12523947) | |
| 740-846, gnl|oryCun1|scaffold_198420 (267369-267484) | |
| 740-846, gnl|panTro1|chr11 (58404680-58404795) | |
| 740-846, gnl|rheMac2|chr15 (83507614-83507729) | |
| 740-846, gnl|rn3|chr1 (222662883-222662768) | |
| 740-846, gnl|tetNig1|chrUn_random (6181141-6181256) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 111-418, gnl|bosTau2|chr8 (24096713-24096406) | |
| 111-418, gnl|Hg17|chr9 (74584480-74584165) | |
| 111-418, gnl|Mm7|chr19 (18576767-18577082) | |
| 466-695, gnl|bosTau2|chr8 (24095216-24094989) | |
| 466-695, gnl|canFam2|chr1 (86491245-86491026) | |
| 466-695, gnl|danRer3|chr5 (13817854-13818064) | |
| 466-695, gnl|dasNov1|scaffold_4022 (53718-53937) | |
| 466-695, gnl|echTel1|scaffold_307786 (82482-82263) | |
| 466-695, gnl|fr1|chrUn (145168821-145168608) | |
| 466-695, gnl|galGal2|chrZ (17231824-17232043) | |
| 466-695, gnl|hg17|chr9 (74582867-74583086) | |
| 466-695, gnl|Hg17|chr9 (74583094-74582869) | |
| 466-695, gnl|loxAfr1|scaffold_29079 (36247-36029) | |
| 466-695, gnl|mm7|chr19 (18578720-18578497) | |
| 466-695, gnl|Mm7|chr19 (18578486-18578712) | |
| 466-695, gnl|monDom2|scaffold_17 (12509029-12508810) | |
| 466-695, gnl|oryCun1|scaffold_183468 (10950-10731) | |
| 466-695, gnl|panTro1|chr11 (58414815-58415034) | |
| 466-695, gnl|rheMac2|chr15 (83517973-83518192) | |
| 466-695, gnl|rn3|chr1 (222651891-222651668) | |
| 466-695, gnl|tetNig1|chrUn_random (6181520-6181730) | |
| 466-695, gnl|xenTro1|scaffold_642 (356455-356243) | |
| 740-846, gnl|bosTau2|chr8 (24083169-24083063) | |
| 740-846, gnl|canFam2|chr1 (86502783-86502668) | |
| 740-846, gnl|danRer3|chr5 (13816836-13816939) | |
| 740-846, gnl|dasNov1|scaffold_12829 (42201-42086) | |
| 740-846, gnl|echTel1|scaffold_1403 (4410-4525) | |
| 740-846, gnl|fr1|chrUn (145169159-145169044) | |
| 740-846, gnl|galGal2|chrZ (17226254-17226369) | |
| 740-846, gnl|hg17|chr9 (74572707-74572822) | |
| 740-846, gnl|Hg17|chr9 (74572815-74572709) | |
| 740-846, gnl|loxAfr1|scaffold_16757 (8647-8759) | |
| 740-846, gnl|mm7|chr19 (18589977-18589862) | |
| 740-846, gnl|Mm7|chr19 (18589867-18589973) | |
| 740-846, gnl|monDom2|scaffold_17 (12524062-12523947) | |
| 740-846, gnl|oryCun1|scaffold_198420 (267369-267484) | |
| 740-846, gnl|panTro1|chr11 (58404680-58404795) | |
| 740-846, gnl|rheMac2|chr15 (83507614-83507729) | |
| 740-846, gnl|rn3|chr1 (222662883-222662768) | |
| 740-846, gnl|tetNig1|chrUn_random (6181141-6181256) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| ski (0.146735) |