Non-Coding RNA Search

Ss1.1-Pig4-TMW8020I03.5

Sequence:


               
               TAAAAGACTTCAGAATTTTAAGAATCTGATACTAGTGCTTAAGACTTTCTGAAGCATTGC
ACTGTTGTTTATTAGAAGTTAATATGTTTACTGTACATAGAGACATGTTTGTAAACATAG
TCATATTAATAAACATTTTTGTTAAATTAAATTTTGAATATCAGTAATATGCACAGCTAA
TTGATGGGTATATATGAACTCCTACTCTCTTGGAAAAGATGGAATAGTTTTATTTTGGCC
ATGTTTATATTTATTTCCTTGTATTTGATTTTTTTCATTTTTGTATTCACTTTAGAGTTT
TCTTTCACACTGGTTAAAATAATTCAGTAATACAATGGAGATGAATGCAACACTATTTTT
CCCTTTTTGCCATTTTTATTAAAATACATTGAAACTTTAATGGACTAGGGATTAGCTTTA
AAAGTGATAATTGAGAAATACTTTATAGTTGAAAGAGTTAGTATTTTACCATGTGCCTGA
AAGGTTTCTGTTTGATAAGTCTAACATTAAAGAAACCAAAAAAAAAAAAAAGAAACCATT
AAGGTTTTTCAGTAGTAGGTATTGATTCTGATAGCCATATAGGAAAGTTTTATAATGGTA
ACCTTGGCTGAATGTTTAATGTAAGGGACCGTAAGAAGTACAATGTATAAGTGCAGAAAT
TGAGAGAAATGTGGCAATTTTATATGCAAAAACATCCAATTTGAGATTGATTTTGCTTTT
GGTAAATATTGCTAAAGCAAAATATGTGAACAAGGAGTTGTTAATGTGTGAAAGTAAGCG
ATGTAAAATGTAACAAAGGAAGAAATGGTGCCCATATTGAATTTTTAATTCTAACAGGGG
AATGATTTACAGATTGAATTGTTTTTCCTGTTTACTTGTTAATGTATCGTCTATAAAAAG
CTCCTGTCTCAAATTTTTGGTATATTGGGATTGATTTTAATTTGTACTAGTGATTTTTTT
TTTAAACCAAGTTACTTATCAGGTGGTAGCCCCAATAGCCGTGCAACATATCTTTAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAAGACTTCAGAATTTTAAGAATCTGATACTAGTGCTTAAGACTTTCTGAAGCATTGC
ACTGTTGTTTATTAGAAGTTAATATGTTTACTGTACATAGAGACATGTTTGTAAACATAG
TCATATTAATAAACATTTTTGTTAAATTAAATTTTGAATATCAGTAATATGCACAGCTAA
TTGATGGGTATATATGAACTCCTACTCTCTTGGAAAAGATGGAATAGTTTTATTTTGGCC
ATGTTTATATTTATTTCCTTGTATTTGATTTTTTTCATTTTTGTATTCACTTTAGAGTTT
TCTTTCACACTGGTTAAAATAATTCAGTAATACAATGGAGATGAATGCAACACTATTTTT
CCCTTTTTGCCATTTTTATTAAAATACATTGAAACTTTAATGGACTAGGGATTAGCTTTA
AAAGTGATAATTGAGAAATACTTTATAGTTGAAAGAGTTAGTATTTTACCATGTGCCTGA
AAGGTTTCTGTTTGATAAGTCTAACATTAAAGAAACCAAAAAAAAAAAAAAGAAACCATT
AAGGTTTTTCAGTAGTAGGTATTGATTCTGATAGCCATATAGGAAAGTTTTATAATGGTA
ACCTTGGCTGAATGTTTAATGTAAGGGACCGTAAGAAGTACAATGTATAAGTGCAGAAAT
TGAGAGAAATGTGGCAATTTTATATGCAAAAACATCCAATTTGAGATTGATTTTGCTTTT
GGTAAATATTGCTAAAGCAAAATATGTGAACAAGGAGTTGTTAATGTGTGAAAGTAAGCG
ATGTAAAATGTAACAAAGGAAGAAATGGTGCCCATATTGAATTTTTAATTCTAACAGGGG
AATGATTTACAGATTGAATTGTTTTTCCTGTTTACTTGTTAATGTATCGTCTATAAAAAG
CTCCTGTCTCAAATTTTTGGTATATTGGGATTGATTTTAATTTGTACTAGTGATTTTTTT
TTTAAACCAAGTTACTTATCAGGTGGTAGCCCCAATAGCCGTGCAACATATCTTTAAATA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-117, - strand, RNAz p=0.58624

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-117, - strand, RNAz p=0.58624

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-515, gnl|bosTau2|chr1 (32877310-32876787)
               

               
               1-515, gnl|canFam2|chr33 (18975386-18976063)
               

               
               1-515, gnl|echTel1|scaffold_301132 (20566-21257)
               

               
               1-515, gnl|hg17|chr3 (112337757-112338465)
               

               
               1-515, gnl|Hg17|chr3 (112337996-112338523)
               

               
               1-515, gnl|loxAfr1|scaffold_508 (30545-31269)
               

               
               1-515, gnl|mm7|chr16 (46225235-46224587)
               

               
               1-515, gnl|Mm7|chr16 (46225000-46224474)
               

               
               1-515, gnl|monDom2|scaffold_24 (4803888-4804699)
               

               
               1-515, gnl|oryCun1|scaffold_206151 (59210-58554)
               

               
               1-515, gnl|panTro1|chr2 (113926101-113926808)
               

               
               1-515, gnl|rheMac2|chr2 (31261224-31261936)
               

               
               1-515, gnl|rn3|chr11 (55947441-55948088)
               


               
               529-1020, gnl|bosTau2|chr1 (32876793-32876300)
               

               
               529-1020, gnl|Hg17|chr3 (112338517-112339071)
               

               
               529-1020, gnl|Mm7|chr16 (46224480-46223982)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr1 (32877310-32876787)
               

               
               1-515, gnl|canFam2|chr33 (18975386-18976063)
               

               
               1-515, gnl|echTel1|scaffold_301132 (20566-21257)
               

               
               1-515, gnl|hg17|chr3 (112337757-112338465)
               

               
               1-515, gnl|Hg17|chr3 (112337996-112338523)
               

               
               1-515, gnl|loxAfr1|scaffold_508 (30545-31269)
               

               
               1-515, gnl|mm7|chr16 (46225235-46224587)
               

               
               1-515, gnl|Mm7|chr16 (46225000-46224474)
               

               
               1-515, gnl|monDom2|scaffold_24 (4803888-4804699)
               

               
               1-515, gnl|oryCun1|scaffold_206151 (59210-58554)
               

               
               1-515, gnl|panTro1|chr2 (113926101-113926808)
               

               
               1-515, gnl|rheMac2|chr2 (31261224-31261936)
               

               
               1-515, gnl|rn3|chr11 (55947441-55948088)
               


               
               529-1020, gnl|bosTau2|chr1 (32876793-32876300)
               

               
               529-1020, gnl|Hg17|chr3 (112338517-112339071)
               

               
               529-1020, gnl|Mm7|chr16 (46224480-46223982)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               lin (0.291206)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               liv (0.146284)

	1-515, gnl\|bosTau2\|chr1 (32877310-32876787)
	1-515, gnl\|canFam2\|chr33 (18975386-18976063)
	1-515, gnl\|echTel1\|scaffold_301132 (20566-21257)
	1-515, gnl\|hg17\|chr3 (112337757-112338465)
	1-515, gnl\|Hg17\|chr3 (112337996-112338523)
	1-515, gnl\|loxAfr1\|scaffold_508 (30545-31269)
	1-515, gnl\|mm7\|chr16 (46225235-46224587)
	1-515, gnl\|Mm7\|chr16 (46225000-46224474)
	1-515, gnl\|monDom2\|scaffold_24 (4803888-4804699)
	1-515, gnl\|oryCun1\|scaffold_206151 (59210-58554)
	1-515, gnl\|panTro1\|chr2 (113926101-113926808)
	1-515, gnl\|rheMac2\|chr2 (31261224-31261936)
	1-515, gnl\|rn3\|chr11 (55947441-55948088)

	529-1020, gnl\|bosTau2\|chr1 (32876793-32876300)
	529-1020, gnl\|Hg17\|chr3 (112338517-112339071)
	529-1020, gnl\|Mm7\|chr16 (46224480-46223982)