Non-Coding RNA Search

Ss1.1-Pig4-TMW8020I16.5

Sequence:


               
               GTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCCTAT
GCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTAGCTGTTGCAGCTGCT
GCAACAGCTGCTGCTTATGGAGGTTACTCCACTGCACACACAGCAACTGACTATGGTTAT
ACCCAGAGGCAACAAGAAGCACCTCCACCACCACCCCCAGCTACTACACAAAACTACCAG
GACTCATACTCATATGTAAGATCCACAGCTCCTGCTGTAGCTTATGATAGTAAGCAGTAC
TACCAACAACCAACAGCGACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCT
GTTGCTGAGACCTACTATCAGACAGCCCCTAAAGCAGGTTATAGCCAAGGTGCAACTCAG
TATACACAAGCCCAGCAAACTCGACAAGTGACAGCCATAAAACCAGCCACACCAAGTCCA
GCTACCACTACTTTCTCCATTTATCCTGTATCCTCCACCGTACAGCCAGTAGCAGCTGCA
GCTACTGTGGTGCCATCCTATACCCAGAGTGCTACTTATAGTACCACTGCAGTTACTTAT
TCTGGTACCTCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCCTCCTACTAC
CAACAACAGCAGCAGCAACAGAAGCAGGCAGCAGCAGCAGCTGCAGCTGCAGCTGCAACG
GCTGCCTGGACAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAAACTGAA
ACCAAAACAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCTAGCTACACTGTCCATCAGGCTCCAGTAGCTGCTCACACAGTTACTGCTGCCTAT
GCACCAGCAGCCGCCACAGTTGCAGTTGCCAGGCCTGCTCCAGTAGCTGTTGCAGCTGCT
GCAACAGCTGCTGCTTATGGAGGTTACTCCACTGCACACACAGCAACTGACTATGGTTAT
ACCCAGAGGCAACAAGAAGCACCTCCACCACCACCCCCAGCTACTACACAAAACTACCAG
GACTCATACTCATATGTAAGATCCACAGCTCCTGCTGTAGCTTATGATAGTAAGCAGTAC
TACCAACAACCAACAGCGACTGCTGCTGCTGTAGCTGCTGCTGCCCAGCCTCAGCCTTCT
GTTGCTGAGACCTACTATCAGACAGCCCCTAAAGCAGGTTATAGCCAAGGTGCAACTCAG
TATACACAAGCCCAGCAAACTCGACAAGTGACAGCCATAAAACCAGCCACACCAAGTCCA
GCTACCACTACTTTCTCCATTTATCCTGTATCCTCCACCGTACAGCCAGTAGCAGCTGCA
GCTACTGTGGTGCCATCCTATACCCAGAGTGCTACTTATAGTACCACTGCAGTTACTTAT
TCTGGTACCTCTTATTCAGGTTATGAAGCAGCAGTGTATTCAGCTGCATCCTCCTACTAC
CAACAACAGCAGCAGCAACAGAAGCAGGCAGCAGCAGCAGCTGCAGCTGCAGCTGCAACG
GCTGCCTGGACAGGGACCACCTTTACTAAAAAAGCACCATTCCAAAATAAACAAACTGAA
ACCAAAACAGCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-239, - strand, RNAz p=0.986867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-239, - strand, RNAz p=0.986867

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               29-177, + strand, RNAmicro p=0.999868
               

               
               26-122, - strand, RNAmicro p=0.939063

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               29-177, + strand, RNAmicro p=0.999868
               

               
               26-122, - strand, RNAmicro p=0.939063

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               1-239, DA601356 HSYRA2 Homo sapiens cDNA clone HSYRA2006719 5', mRNA 
(dbj|DA601356.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DA605051 IMR322 Homo sapiens cDNA clone IMR322001805 5', mRNA 
(dbj|DA605051.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DA675088 NETRP2 Homo sapiens cDNA clone NETRP2005964 5', mRNA 
(dbj|DA675088.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DA691446 NT2NE2 Homo sapiens cDNA clone NT2NE2011140 5', mRNA 
(dbj|DA691446.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DB019652 TESTI1 Homo sapiens cDNA clone TESTI1000150 5', mRNA 
(dbj|DB019652.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DB044045 TESTI2 Homo sapiens cDNA clone TESTI2031922 5', mRNA 
(dbj|DB044045.1|), blast E-value=0, identity=98.33%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1-239, DA601356 HSYRA2 Homo sapiens cDNA clone HSYRA2006719 5', mRNA 
(dbj|DA601356.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DA605051 IMR322 Homo sapiens cDNA clone IMR322001805 5', mRNA 
(dbj|DA605051.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DA675088 NETRP2 Homo sapiens cDNA clone NETRP2005964 5', mRNA 
(dbj|DA675088.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DA691446 NT2NE2 Homo sapiens cDNA clone NT2NE2011140 5', mRNA 
(dbj|DA691446.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DB019652 TESTI1 Homo sapiens cDNA clone TESTI1000150 5', mRNA 
(dbj|DB019652.1|), blast E-value=0, identity=98.33% 
               

               
               1-239, DB044045 TESTI2 Homo sapiens cDNA clone TESTI2031922 5', mRNA 
(dbj|DB044045.1|), blast E-value=0, identity=98.33%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-241, gnl|bosTau2|chr20 (26369705-26369465)
               

               
               1-241, gnl|Hg17|chr5 (32455922-32455682)
               

               
               1-241, gnl|Mm7|chr15 (12196402-12196642)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-241, gnl|bosTau2|chr20 (26369705-26369465)
               

               
               1-241, gnl|Hg17|chr5 (32455922-32455682)
               

               
               1-241, gnl|Mm7|chr15 (12196402-12196642)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pgl (0.118483)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.118483)

	29-177, + strand, RNAmicro p=0.999868
	26-122, - strand, RNAmicro p=0.939063

	1-239, DA601356 HSYRA2 Homo sapiens cDNA clone HSYRA2006719 5', mRNA (dbj\|DA601356.1\|), blast E-value=0, identity=98.33%
	1-239, DA605051 IMR322 Homo sapiens cDNA clone IMR322001805 5', mRNA (dbj\|DA605051.1\|), blast E-value=0, identity=98.33%
	1-239, DA675088 NETRP2 Homo sapiens cDNA clone NETRP2005964 5', mRNA (dbj\|DA675088.1\|), blast E-value=0, identity=98.33%
	1-239, DA691446 NT2NE2 Homo sapiens cDNA clone NT2NE2011140 5', mRNA (dbj\|DA691446.1\|), blast E-value=0, identity=98.33%
	1-239, DB019652 TESTI1 Homo sapiens cDNA clone TESTI1000150 5', mRNA (dbj\|DB019652.1\|), blast E-value=0, identity=98.33%
	1-239, DB044045 TESTI2 Homo sapiens cDNA clone TESTI2031922 5', mRNA (dbj\|DB044045.1\|), blast E-value=0, identity=98.33%

	1-241, gnl\|bosTau2\|chr20 (26369705-26369465)
	1-241, gnl\|Hg17\|chr5 (32455922-32455682)
	1-241, gnl\|Mm7\|chr15 (12196402-12196642)