Non-Coding RNA Search

Ss1.1-Pig4-TMW8020K01.5

Sequence:


               
               CTGCCCTCTGTGGAGTTGGGGCTCACACCCCCGGGGTGGGACTTCACGGTTTTGCCAGTG
GTCCCTGCCTCCTGGCCTCCACCTCACAGAGGATGGAGGAGGGTGCTGCTGGCAAGGGGC
CCATTTCTCAGCACAGTACACTTCCTGTCTCAGCTCTGGGAGACTATGCACCCAAGCACC
CAACTTCCAACCAGAGAGAGACGTCCTCGGATAACGAAGACCCTTGCTTCCTCTGTCTGT
GACTTTACACACGTCGTTAGAAGTCGTTTTAGCATCAAGACCAATCCCATCCCTAGGACA
TACCTCCCAACTCCCCTGATTCTTATTAGAACGCTCCTTTATAATGATATTCAATTTGAG
TGGGTTCCCCCCCCTTTGTTCCTGGATGTAATGAAATGATAAATATGATGACAGATTTTC
ACTGTGTATACTAGCAATATGTACACACATGCCAGTGTATCTTAACACACAACTTGGTTA
CATTTTGGATTATTGTCATTAATCTCGATTCATGTAATTGGGAAACTCCAGGGACCTCGT
AATGTCTGCTTATCATAGAAGAAAGTTGGGTTCATGGTTCTGAGCTCCCTACTTCAAAAG
TTTTTCCTCCTGGGTTTTCTGTGTTCTCTTTTTATTCTGAAATGTGTAAATTAGGTTGTG
AGGTATGTTTAAGGATTGGAAGCTAGGGGAATGCTTTAGGCATTTCTTGCAACCAAAAGT
TAACCTCATCACAGTTAACGAGCATCTTTGATTGGTCTTTTGTGGAATCTGAACTAAATC
TATGAGCCTTATTCAATATCTATAATTCTATGATTTTTTTTAAATTATGGGAAATTAATG
AAAGATGTTTACATGAATAACGTTTGCCCTTACTGTGTTATGAATGAGTTTTTTGTAGTG
TGTCTGGGTGCATGTGCAAGAGAGTAGGAAAAATGTTTCTGAAACAAAACTTGACAAATA
TTTGTAATGAAAAGTAAATTTAAAGATTGCTATAATTGCGCTATAGAAACAATGCAAGTA
TTAAACAAAATATACAATCAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCTCTGTGGAGTTGGGGCTCACACCCCCGGGGTGGGACTTCACGGTTTTGCCAGTG
GTCCCTGCCTCCTGGCCTCCACCTCACAGAGGATGGAGGAGGGTGCTGCTGGCAAGGGGC
CCATTTCTCAGCACAGTACACTTCCTGTCTCAGCTCTGGGAGACTATGCACCCAAGCACC
CAACTTCCAACCAGAGAGAGACGTCCTCGGATAACGAAGACCCTTGCTTCCTCTGTCTGT
GACTTTACACACGTCGTTAGAAGTCGTTTTAGCATCAAGACCAATCCCATCCCTAGGACA
TACCTCCCAACTCCCCTGATTCTTATTAGAACGCTCCTTTATAATGATATTCAATTTGAG
TGGGTTCCCCCCCCTTTGTTCCTGGATGTAATGAAATGATAAATATGATGACAGATTTTC
ACTGTGTATACTAGCAATATGTACACACATGCCAGTGTATCTTAACACACAACTTGGTTA
CATTTTGGATTATTGTCATTAATCTCGATTCATGTAATTGGGAAACTCCAGGGACCTCGT
AATGTCTGCTTATCATAGAAGAAAGTTGGGTTCATGGTTCTGAGCTCCCTACTTCAAAAG
TTTTTCCTCCTGGGTTTTCTGTGTTCTCTTTTTATTCTGAAATGTGTAAATTAGGTTGTG
AGGTATGTTTAAGGATTGGAAGCTAGGGGAATGCTTTAGGCATTTCTTGCAACCAAAAGT
TAACCTCATCACAGTTAACGAGCATCTTTGATTGGTCTTTTGTGGAATCTGAACTAAATC
TATGAGCCTTATTCAATATCTATAATTCTATGATTTTTTTTAAATTATGGGAAATTAATG
AAAGATGTTTACATGAATAACGTTTGCCCTTACTGTGTTATGAATGAGTTTTTTGTAGTG
TGTCTGGGTGCATGTGCAAGAGAGTAGGAAAAATGTTTCTGAAACAAAACTTGACAAATA
TTTGTAATGAAAAGTAAATTTAAAGATTGCTATAATTGCGCTATAGAAACAATGCAAGTA
TTAAACAAAATATACAATCAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-153, + strand, RNAz p=0.99588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-153, + strand, RNAz p=0.99588

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               33-133, + strand, RNAmicro p=1
               

               
               51-154, - strand, RNAmicro p=0.999984

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               33-133, + strand, RNAmicro p=1
               

               
               51-154, - strand, RNAmicro p=0.999984

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1040, gnl|bosTau2|chr17 (11287775-11288824)
               

               
               1-1040, gnl|Hg17|chr4 (140785854-140784797)
               

               
               1-1040, gnl|Mm7|chr3 (51640902-51639846)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1040, gnl|bosTau2|chr17 (11287775-11288824)
               

               
               1-1040, gnl|Hg17|chr4 (140785854-140784797)
               

               
               1-1040, gnl|Mm7|chr3 (51640902-51639846)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               sme (0.91631)
               

               
               tra (0.738552)
               

               
               ret (0.514933)
               

               
               tbr (0.462535)
               

               
               fat (0.442282)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.91631)
               

               
               tra (0.738552)
               

               
               ret (0.514933)
               

               
               tbr (0.462535)
               

               
               fat (0.442282)
               

               
               gul (0.355177)
               

               
               vin (0.332557)
               

               
               lin (0.291206)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               kid (0.259471)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               mgm (0.180343)
               

               
               duo (0.172801)
               

               
               fco (0.157208)
               

               
               isp (0.150376)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               sug (0.127291)
               

               
               ese (0.126502)

	33-133, + strand, RNAmicro p=1
	51-154, - strand, RNAmicro p=0.999984

	1-1040, gnl\|bosTau2\|chr17 (11287775-11288824)
	1-1040, gnl\|Hg17\|chr4 (140785854-140784797)
	1-1040, gnl\|Mm7\|chr3 (51640902-51639846)

	sme (0.91631)
	tra (0.738552)
	ret (0.514933)
	tbr (0.462535)
	fat (0.442282)
	gul (0.355177)
	vin (0.332557)
	lin (0.291206)
	ldo (0.291008)
	ste (0.270416)
	kid (0.259471)
	spc (0.226732)
	tes (0.207814)
	mgm (0.180343)
	duo (0.172801)
	fco (0.157208)
	isp (0.150376)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	ssp (0.13552)
	sug (0.127291)
	ese (0.126502)