Non-Coding RNA Search

Ss1.1-Pig4-TMW8020K04.5

Sequence:


               
               GCACTTCTGTTTTGCGAAAAGAGACTTTACGGCTCACATAGCCAAAATTTTCCGCCTTAA
AAAAATTGCGCATTGCGGGGAAATTTTCCTTTAAAAAAATTTAGCACTTGCGGGGGTGGG
ATAAAAAAGAAGTTAGAAAAAGGCACTTCTCAGGAAAAAAAAAAAAAAGCACTTCGCAAA
AAACGAACACAACAAATTAAGAGAAAAATTTGCGGGAAAAAAATGAATTAGAAAATGCGC
ATTGCAGGAAAAATCAGACAAAAGCACTTGGCAGGAAAAATGCATTAGATAAAAAGCGCA
TTGCAGAAAAAATTAGACAAAGGAACTACCAAAAAATTATGAATCGATAAAGCTCTGAAG
AAAACAGAGGAAAAGGTTCTTTGCAGGAAAATAGAAGAGAAAAAAATGCGCTTTCAAAAA
AGGACAGTTCGCTTTACTAAAAAAAAAAATCACATATAGGCAAAGCGCTTTGTGTAAAAA
AAAAAAAAAAGAGAAAAAAAAATCAGAAGAAAGCGCTTTGCCCATAAAATCACCTACCCT
AAAAGCACCCCTTGCAGGAAGAATTCCCTGCTAAAGGAATCCTTTGCCAAGGAATCGCAT
ATTTCCTTCAAGGTGTTCCTGGAATGCTGCATTTACTGGGTAGGATTCGCTTTTCGAAAT
CCTCCAGGGACACAGCCCATTGCGAGAAGTGAGGTATACCTAAGTTGTGGGTCCAATCAG
CTTGCGGCCATGCAGCCTTCAGCACAGTTGGAAAAGCTCCAGCTGCCCTGACTCGTGGAC
AGACAAGCGCGCCGCACCCGCCTCTCCTCATTGGACAGGCGGGCGGGGCAGGGGTGGGGC
GGGGGCGGGCATGGCAGCGCTGCAGACACGCTGCGGGTGCCCGCCTCTAAGGGCAGGTCT
TGGGTCTCTATCTCGTCACAGGTGTTCAGGTACTCCCTGCAGAAGCTGGCCTACACCGTG
TCGAGAACCGGGCGGCACGTGCTGGGAGAGCGCCGCCAGCGGGCCCCCAACTGAGGCTCC
AGCCCCCAACCCTGGGCGGCCGTGTCACCAGGTGCTCCTGTGCAATTCCACCAGCATGGG
AGCCAGTGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACTTCTGTTTTGCGAAAAGAGACTTTACGGCTCACATAGCCAAAATTTTCCGCCTTAA
AAAAATTGCGCATTGCGGGGAAATTTTCCTTTAAAAAAATTTAGCACTTGCGGGGGTGGG
ATAAAAAAGAAGTTAGAAAAAGGCACTTCTCAGGAAAAAAAAAAAAAAGCACTTCGCAAA
AAACGAACACAACAAATTAAGAGAAAAATTTGCGGGAAAAAAATGAATTAGAAAATGCGC
ATTGCAGGAAAAATCAGACAAAAGCACTTGGCAGGAAAAATGCATTAGATAAAAAGCGCA
TTGCAGAAAAAATTAGACAAAGGAACTACCAAAAAATTATGAATCGATAAAGCTCTGAAG
AAAACAGAGGAAAAGGTTCTTTGCAGGAAAATAGAAGAGAAAAAAATGCGCTTTCAAAAA
AGGACAGTTCGCTTTACTAAAAAAAAAAATCACATATAGGCAAAGCGCTTTGTGTAAAAA
AAAAAAAAAAGAGAAAAAAAAATCAGAAGAAAGCGCTTTGCCCATAAAATCACCTACCCT
AAAAGCACCCCTTGCAGGAAGAATTCCCTGCTAAAGGAATCCTTTGCCAAGGAATCGCAT
ATTTCCTTCAAGGTGTTCCTGGAATGCTGCATTTACTGGGTAGGATTCGCTTTTCGAAAT
CCTCCAGGGACACAGCCCATTGCGAGAAGTGAGGTATACCTAAGTTGTGGGTCCAATCAG
CTTGCGGCCATGCAGCCTTCAGCACAGTTGGAAAAGCTCCAGCTGCCCTGACTCGTGGAC
AGACAAGCGCGCCGCACCCGCCTCTCCTCATTGGACAGGCGGGCGGGGCAGGGGTGGGGC
GGGGGCGGGCATGGCAGCGCTGCAGACACGCTGCGGGTGCCCGCCTCTAAGGGCAGGTCT
TGGGTCTCTATCTCGTCACAGGTGTTCAGGTACTCCCTGCAGAAGCTGGCCTACACCGTG
TCGAGAACCGGGCGGCACGTGCTGGGAGAGCGCCGCCAGCGGGCCCCCAACTGAGGCTCC
AGCCCCCAACCCTGGGCGGCCGTGTCACCAGGTGCTCCTGTGCAATTCCACCAGCATGGG
AGCCAGTGCCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16758386|ref|NP_446053.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16758386|ref|NP_446053.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               471-858, - strand, RNAz p=0.98913
               

               
               975-1092, - strand, RNAz p=0.51423

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               471-858, - strand, RNAz p=0.98913
               

               
               975-1092, - strand, RNAz p=0.51423

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1092, gnl|bosTau2|chr13 (49211960-49210900)
               

               
               1-1092, gnl|Hg17|chr20 (35583553-35584653)
               

               
               1-1092, gnl|Mm7|chr2 (157301474-157302602)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr13 (49211960-49210900)
               

               
               1-1092, gnl|Hg17|chr20 (35583553-35584653)
               

               
               1-1092, gnl|Mm7|chr2 (157301474-157302602)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eye (0.170503)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)

	471-858, - strand, RNAz p=0.98913
	975-1092, - strand, RNAz p=0.51423

	1-1092, gnl\|bosTau2\|chr13 (49211960-49210900)
	1-1092, gnl\|Hg17\|chr20 (35583553-35584653)
	1-1092, gnl\|Mm7\|chr2 (157301474-157302602)