Non-Coding RNA Search

Ss1.1-Pig4-TMW8020L03.5

Sequence:


               
               ATGGCAGTGGATGATCCTGCAGCCATTACAAGTGAAGTAAGAAAAAAAATTCTAAGTAAA
TTGTCAGAGGAAACTAAAGTAGCTCTCTCAAAACTCCATAGCTCTCTGAATGAAAAGAGC
ATAGAAGACTTTCTTTCTTGCCTGGATTCTGCAGCAGAAGCTTGTGATATTATGGTGAAA
AAGGGAGACAAAAAAAGGGAAAGGCAGATACTGTTCCAGCATCGACAAGCACTGACTGAA
CAACTAAAAGTCACAGAAGACCCTGCTCTTATTCTGCATCTCACATCAGTTCTATTGTTT
CAGTTCTTGACCCACAGCATGCTTCATGCACCCGGAAGATGTGTCCCACAGATCATTGCT
TTTCTGAGTAGTAAAATTCCAGAGGATCAGCATACCCTTTTAGTAAAGTATCAAGGTTTG
GTTGTAAAGCATTTACTTAGTCAGAATAAGAAGACTGGGCAGGGAGAAAATTCCTTGAGT
GATGAATTAGACAAAGAACAAGAAGATATCACAAATACTACTCGTAAAGAGCTTCAAGAA
CTTTCTTCATCCATTAAAGACCTTGTTCTCAAATCGAGGAAATCATCAATGACAGAAGAA
TAATGATTTTAATTTACTTAATGTTGTATAGTAGACATTTTTTGCCTAGAGTTAAAGGTG
AGTGGTTACCAAAAAAAATAATCATTTCACAAGCCTCAGTCCCCTTAATAGCACCTCCCA
CATTCACGGTTTAGTTAAAACAGTAGCATTGCATTCACTGTAAATCTTATAAAAATGTGA
ATTTTTGTAAATTGAGTTCTCCATGGAAGATTTCTTTTTCACATTATAATTCTAAAAATT
ATACATTTCATGTTTATTTTCTTTTTAGATGCTGAATGAAGAATAAATTCTCTGATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGCAGTGGATGATCCTGCAGCCATTACAAGTGAAGTAAGAAAAAAAATTCTAAGTAAA
TTGTCAGAGGAAACTAAAGTAGCTCTCTCAAAACTCCATAGCTCTCTGAATGAAAAGAGC
ATAGAAGACTTTCTTTCTTGCCTGGATTCTGCAGCAGAAGCTTGTGATATTATGGTGAAA
AAGGGAGACAAAAAAAGGGAAAGGCAGATACTGTTCCAGCATCGACAAGCACTGACTGAA
CAACTAAAAGTCACAGAAGACCCTGCTCTTATTCTGCATCTCACATCAGTTCTATTGTTT
CAGTTCTTGACCCACAGCATGCTTCATGCACCCGGAAGATGTGTCCCACAGATCATTGCT
TTTCTGAGTAGTAAAATTCCAGAGGATCAGCATACCCTTTTAGTAAAGTATCAAGGTTTG
GTTGTAAAGCATTTACTTAGTCAGAATAAGAAGACTGGGCAGGGAGAAAATTCCTTGAGT
GATGAATTAGACAAAGAACAAGAAGATATCACAAATACTACTCGTAAAGAGCTTCAAGAA
CTTTCTTCATCCATTAAAGACCTTGTTCTCAAATCGAGGAAATCATCAATGACAGAAGAA
TAATGATTTTAATTTACTTAATGTTGTATAGTAGACATTTTTTGCCTAGAGTTAAAGGTG
AGTGGTTACCAAAAAAAATAATCATTTCACAAGCCTCAGTCCCCTTAATAGCACCTCCCA
CATTCACGGTTTAGTTAAAACAGTAGCATTGCATTCACTGTAAATCTTATAAAAATGTGA
ATTTTTGTAAATTGAGTTCTCCATGGAAGATTTCTTTTTCACATTATAATTCTAAAAATT
ATACATTTCATGTTTATTTTCTTTTTAGATGCTGAATGAAGAATAAATTCTCTGATATTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|26349957|dbj|BAC38618.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26349957|dbj|BAC38618.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               377-898, gnl|bosTau2|chr9 (29304303-29303779)
               

               
               377-898, gnl|Hg17|chr6 (97107874-97108434)
               

               
               377-898, gnl|Mm7|chr4 (25320495-25319960)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               377-898, gnl|bosTau2|chr9 (29304303-29303779)
               

               
               377-898, gnl|Hg17|chr6 (97107874-97108434)
               

               
               377-898, gnl|Mm7|chr4 (25320495-25319960)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fco (0.314416)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cte (0.29274)
               

               
               tes (0.207814)
               

               
               fhi (0.169578)

	377-898, gnl\|bosTau2\|chr9 (29304303-29303779)
	377-898, gnl\|Hg17\|chr6 (97107874-97108434)
	377-898, gnl\|Mm7\|chr4 (25320495-25319960)