Ss1.1-Pig4-TMW8020M16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGTATGAGGGCTGTGTCAGACAGCCCGGCTGCCATGGCGTCCTATTTTGATGAACACG ACTGCGAGCCGTTGGACCCCGAGCCGGATGCCCGAACCAACATGCTGCTGGAGCTCGCAA GGTCACTTTTCAATAGGATGGACTTCGAAGACTTGGGGCTGGTGGTAGATTGGGATCACC ACCTGCCTCCGCCTGCTGCCAAGACAGTGGTTGAGAACCTCCCTAGGACGGTCATCAGAG GCTCTCAGGCCGAGCTCAAGTGCCCCGTGTGTCTTTTGGAATTTGAGGAGGAGGAGACTG CCATTGAGATGCCTTGCCATCACCTCTTCCATTCCGGCTGCATTCTGCCCTGGCTGAGCA AGACAAACTCCTGCCCCCTGTGCCGCCATGAGCTGCCCACAGATGATGACACTTATGAGG AGCACAGACGAGATAAGGCTCGCAAGCAGCAGCAGAAGCACCGACTGGAGAACCTTCATG GAGCCATGTACACATGAGGCGGCTGGGGCTGAGCACTGGTCCTCCACAACATCTTCCGCT TGCGCCTCGAATCATTAAAGGTTTCTTTACCCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGTATGAGGGCTGTGTCAGACAGCCCGGCTGCCATGGCGTCCTATTTTGATGAACACG ACTGCGAGCCGTTGGACCCCGAGCCGGATGCCCGAACCAACATGCTGCTGGAGCTCGCAA GGTCACTTTTCAATAGGATGGACTTCGAAGACTTGGGGCTGGTGGTAGATTGGGATCACC ACCTGCCTCCGCCTGCTGCCAAGACAGTGGTTGAGAACCTCCCTAGGACGGTCATCAGAG GCTCTCAGGCCGAGCTCAAGTGCCCCGTGTGTCTTTTGGAATTTGAGGAGGAGGAGACTG CCATTGAGATGCCTTGCCATCACCTCTTCCATTCCGGCTGCATTCTGCCCTGGCTGAGCA AGACAAACTCCTGCCCCCTGTGCCGCCATGAGCTGCCCACAGATGATGACACTTATGAGG AGCACAGACGAGATAAGGCTCGCAAGCAGCAGCAGAAGCACCGACTGGAGAACCTTCATG GAGCCATGTACACATGAGGCGGCTGGGGCTGAGCACTGGTCCTCCACAACATCTTCCGCT TGCGCCTCGAATCATTAAAGGTTTCTTTACCCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 120-250, gnl|bosTau2|chr11 (36404483-36404353) | |
| 120-250, gnl|canFam2|chr17 (42549018-42548835) | |
| 120-250, gnl|canFam2|chr17 (42548847-42548935) | |
| 120-250, gnl|danRer3|chr19 (12031527-12031713) | |
| 120-250, gnl|dasNov1|scaffold_161808 (7761-7577) | |
| 120-250, gnl|dasNov1|scaffold_161808 (7590-7678) | |
| 120-250, gnl|echTel1|scaffold_294679 (61-263) | |
| 120-250, gnl|echTel1|scaffold_294679 (249-163) | |
| 120-250, gnl|fr1|chrUn (56639623-56639476) | |
| 120-250, gnl|hg17|chr11 (124183156-124183246) | |
| 120-250, gnl|hg17|chr2 (85735261-85735444) | |
| 120-250, gnl|Hg17|chr2 (85735298-85735428) | |
| 120-250, gnl|loxAfr1|scaffold_70230 (11963-11781) | |
| 120-250, gnl|loxAfr1|scaffold_70230 (11793-11879) | |
| 120-250, gnl|mm7|chr6 (72379505-72379321) | |
| 120-250, gnl|mm7|chr6 (72379343-72379428) | |
| 120-250, gnl|Mm7|chr6 (72379472-72379345) | |
| 120-250, gnl|monDom2|scaffold_68 (9508739-9508932) | |
| 120-250, gnl|oryCun1|scaffold_170874 (816-999) | |
| 120-250, gnl|oryCun1|scaffold_173608 (14753-14841) | |
| 120-250, gnl|panTro1|chr12 (88610189-88610372) | |
| 120-250, gnl|panTro1|chr9 (126264964-126265054) | |
| 120-250, gnl|rheMac2|chr13 (86168647-86168837) | |
| 120-250, gnl|rheMac2|chr14 (122962552-122962642) | |
| 120-250, gnl|rn3|chr4 (105910898-105910723) | |
| 120-250, gnl|rn3|chr4 (105910735-105910820) | |
| 120-250, gnl|tetNig1|chr12 (11773798-11773635) | |
| 120-250, gnl|xenTro1|scaffold_217 (608424-608658) | |
| 252-362, gnl|bosTau2|chr11 (36404165-36404055) | |
| 252-362, gnl|canFam2|chr17 (42548791-42548558) | |
| 252-362, gnl|canFam2|chr17 (42548672-42548564) | |
| 252-362, gnl|canFam2|chr17 (42548562-42548667) | |
| 252-362, gnl|danRer3|chr19 (12031727-12031976) | |
| 252-362, gnl|dasNov1|scaffold_161808 (7527-7290) | |
| 252-362, gnl|dasNov1|scaffold_161808 (7406-7298) | |
| 252-362, gnl|dasNov1|scaffold_161808 (7296-7401) | |
| 252-362, gnl|echTel1|scaffold_294679 (310-546) | |
| 252-362, gnl|echTel1|scaffold_294679 (432-540) | |
| 252-362, gnl|echTel1|scaffold_294679 (540-437) | |
| 252-362, gnl|hg17|chr11 (124183050-124183145) | |
| 252-362, gnl|hg17|chr2 (85735483-85735717) | |
| 252-362, gnl|Hg17|chr2 (85735602-85735712) | |
| 252-362, gnl|hg17|chr7 (104764826-104764930) | |
| 252-362, gnl|loxAfr1|scaffold_70230 (11752-11532) | |
| 252-362, gnl|loxAfr1|scaffold_70230 (11646-11538) | |
| 252-362, gnl|loxAfr1|scaffold_70230 (11538-11641) | |
| 252-362, gnl|mm7|chr6 (72379264-72379045) | |
| 252-362, gnl|mm7|chr6 (72379159-72379051) | |
| 252-362, gnl|mm7|chr6 (72379051-72379154) | |
| 252-362, gnl|Mm7|chr6 (72379158-72379048) | |
| 252-362, gnl|monDom2|scaffold_68 (9509013-9509274) | |
| 252-362, gnl|oryCun1|scaffold_170874 (1047-1281) | |
| 252-362, gnl|oryCun1|scaffold_173608 (14578-14470) | |
| 252-362, gnl|oryCun1|scaffold_173608 (14468-14573) | |
| 252-362, gnl|panTro1|chr12 (88610411-88610645) | |
| 252-362, gnl|panTro1|chr6 (106604170-106604274) | |
| 252-362, gnl|panTro1|chr9 (126264858-126264953) | |
| 252-362, gnl|rheMac2|chr13 (86168876-86169111) | |
| 252-362, gnl|rheMac2|chr14 (122962446-122962541) | |
| 252-362, gnl|rheMac2|chr3 (142944136-142944236) | |
| 252-362, gnl|rn3|chr4 (105910673-105910454) | |
| 252-362, gnl|rn3|chr4 (105910568-105910460) | |
| 252-362, gnl|rn3|chr4 (105910460-105910563) | |
| 252-362, gnl|tetNig1|chr12 (11773623-11773436) | |
| 252-362, gnl|tetNig1|chr12 (11773546-11773441) | |
| 252-362, gnl|xenTro1|scaffold_217 (608700-608899) | |
| 436-567, gnl|bosTau2|chr11 (36403512-36403378) | |
| 436-567, gnl|Hg17|chr2 (85736224-85736355) | |
| 436-567, gnl|Mm7|chr6 (72378575-72378441) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-250, gnl|bosTau2|chr11 (36404483-36404353) | |
| 120-250, gnl|canFam2|chr17 (42549018-42548835) | |
| 120-250, gnl|canFam2|chr17 (42548847-42548935) | |
| 120-250, gnl|danRer3|chr19 (12031527-12031713) | |
| 120-250, gnl|dasNov1|scaffold_161808 (7761-7577) | |
| 120-250, gnl|dasNov1|scaffold_161808 (7590-7678) | |
| 120-250, gnl|echTel1|scaffold_294679 (61-263) | |
| 120-250, gnl|echTel1|scaffold_294679 (249-163) | |
| 120-250, gnl|fr1|chrUn (56639623-56639476) | |
| 120-250, gnl|hg17|chr11 (124183156-124183246) | |
| 120-250, gnl|hg17|chr2 (85735261-85735444) | |
| 120-250, gnl|Hg17|chr2 (85735298-85735428) | |
| 120-250, gnl|loxAfr1|scaffold_70230 (11963-11781) | |
| 120-250, gnl|loxAfr1|scaffold_70230 (11793-11879) | |
| 120-250, gnl|mm7|chr6 (72379505-72379321) | |
| 120-250, gnl|mm7|chr6 (72379343-72379428) | |
| 120-250, gnl|Mm7|chr6 (72379472-72379345) | |
| 120-250, gnl|monDom2|scaffold_68 (9508739-9508932) | |
| 120-250, gnl|oryCun1|scaffold_170874 (816-999) | |
| 120-250, gnl|oryCun1|scaffold_173608 (14753-14841) | |
| 120-250, gnl|panTro1|chr12 (88610189-88610372) | |
| 120-250, gnl|panTro1|chr9 (126264964-126265054) | |
| 120-250, gnl|rheMac2|chr13 (86168647-86168837) | |
| 120-250, gnl|rheMac2|chr14 (122962552-122962642) | |
| 120-250, gnl|rn3|chr4 (105910898-105910723) | |
| 120-250, gnl|rn3|chr4 (105910735-105910820) | |
| 120-250, gnl|tetNig1|chr12 (11773798-11773635) | |
| 120-250, gnl|xenTro1|scaffold_217 (608424-608658) | |
| 252-362, gnl|bosTau2|chr11 (36404165-36404055) | |
| 252-362, gnl|canFam2|chr17 (42548791-42548558) | |
| 252-362, gnl|canFam2|chr17 (42548672-42548564) | |
| 252-362, gnl|canFam2|chr17 (42548562-42548667) | |
| 252-362, gnl|danRer3|chr19 (12031727-12031976) | |
| 252-362, gnl|dasNov1|scaffold_161808 (7527-7290) | |
| 252-362, gnl|dasNov1|scaffold_161808 (7406-7298) | |
| 252-362, gnl|dasNov1|scaffold_161808 (7296-7401) | |
| 252-362, gnl|echTel1|scaffold_294679 (310-546) | |
| 252-362, gnl|echTel1|scaffold_294679 (432-540) | |
| 252-362, gnl|echTel1|scaffold_294679 (540-437) | |
| 252-362, gnl|hg17|chr11 (124183050-124183145) | |
| 252-362, gnl|hg17|chr2 (85735483-85735717) | |
| 252-362, gnl|Hg17|chr2 (85735602-85735712) | |
| 252-362, gnl|hg17|chr7 (104764826-104764930) | |
| 252-362, gnl|loxAfr1|scaffold_70230 (11752-11532) | |
| 252-362, gnl|loxAfr1|scaffold_70230 (11646-11538) | |
| 252-362, gnl|loxAfr1|scaffold_70230 (11538-11641) | |
| 252-362, gnl|mm7|chr6 (72379264-72379045) | |
| 252-362, gnl|mm7|chr6 (72379159-72379051) | |
| 252-362, gnl|mm7|chr6 (72379051-72379154) | |
| 252-362, gnl|Mm7|chr6 (72379158-72379048) | |
| 252-362, gnl|monDom2|scaffold_68 (9509013-9509274) | |
| 252-362, gnl|oryCun1|scaffold_170874 (1047-1281) | |
| 252-362, gnl|oryCun1|scaffold_173608 (14578-14470) | |
| 252-362, gnl|oryCun1|scaffold_173608 (14468-14573) | |
| 252-362, gnl|panTro1|chr12 (88610411-88610645) | |
| 252-362, gnl|panTro1|chr6 (106604170-106604274) | |
| 252-362, gnl|panTro1|chr9 (126264858-126264953) | |
| 252-362, gnl|rheMac2|chr13 (86168876-86169111) | |
| 252-362, gnl|rheMac2|chr14 (122962446-122962541) | |
| 252-362, gnl|rheMac2|chr3 (142944136-142944236) | |
| 252-362, gnl|rn3|chr4 (105910673-105910454) | |
| 252-362, gnl|rn3|chr4 (105910568-105910460) | |
| 252-362, gnl|rn3|chr4 (105910460-105910563) | |
| 252-362, gnl|tetNig1|chr12 (11773623-11773436) | |
| 252-362, gnl|tetNig1|chr12 (11773546-11773441) | |
| 252-362, gnl|xenTro1|scaffold_217 (608700-608899) | |
| 436-567, gnl|bosTau2|chr11 (36403512-36403378) | |
| 436-567, gnl|Hg17|chr2 (85736224-85736355) | |
| 436-567, gnl|Mm7|chr6 (72378575-72378441) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| cov (0.396458) | |
| eep (0.245128) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.396458) | |
| eep (0.245128) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sto (0.179824) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nje (0.16592) | |
| csp (0.161186) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ute (0.132784) | |
| sug (0.127291) | |
| ese (0.126502) | |
| cly (0.120642) | |
| jca (0.11396) | |
| jej (0.0989218) |