Non-Coding RNA Search

Ss1.1-Pig4-TMW8020N20.5

Sequence:


               
               GGGCTTGTAAACATGGAGTCACAGGGCGCTGGGACTGCGGAGTCGTCCTCTCGATTGGAG
GCTCCGGCACCCACTGACGACCGGCTTTTCCTGGTTAAAGGTGGAATTTTCCTTGGTACT
GTTGCTGCAGCGGGAATGCTAGCTGGATTTGTTACAACATTATCGTTGGCTAAAAAGAAA
AGTCCTGAATGGTTCAATAAGGGAAGCATGGCCACGGCTGCCTTGCCAGAGAGCGGCTCT
TCCCTTGCCTTGCGAGCCCTGGGCTGGGGCTCACTTTACGCGTGGTGTGGTGTTGGCGTG
ATCAGCTTTGCCATCTGGAAAGCTTTAGGAGTTCACAGTGTGAAAGACTTTCGAAGTAAA
ATGCAATCAATATTTCCAGCAATTCCCAAGAACTCTGAATCGGCTGCTGAGTGGGAAGAA
GCATTGAAATCCAAGTGAGATGAGCATGATGGATGAAGTCCAGAATAACTGTTACAGAAA
AGGCTGGCTTCGGAGATGCCACAATAGCAAAGGGACTCGATTGATTTCTCCTCAGGAACA
CATGCAGATTGGTGACTGAACTTATGGGACGGATGACATTCAGTGTCCTCTTAGGAGGCC
AACAGTCATTTCTGTTGTGTTGTACTTTACAGTTGATTTGGTTATGTTCGTGTGTGTGTG
TGTTGGAGGGAAGGTAAAGTTTTTGCAAAGTTAGACTATTTAAAAATAATTACATGTAGG
AATTCCCACTGTGGTACAACAGAATTGGCAGCGTCTTGAGTGCTGGGATGCAGGTTCAAT
TCCTGGCCGGGCACAATGGGTTAAGGATCCAGTGTTAACTGCAGCTTCAGCTTAGGTCGC
ACCTGCAGCCTGAATCTGATCCCTGGCCCAGGAATTCCATGTGCAGGGGGTGGCCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTTGTAAACATGGAGTCACAGGGCGCTGGGACTGCGGAGTCGTCCTCTCGATTGGAG
GCTCCGGCACCCACTGACGACCGGCTTTTCCTGGTTAAAGGTGGAATTTTCCTTGGTACT
GTTGCTGCAGCGGGAATGCTAGCTGGATTTGTTACAACATTATCGTTGGCTAAAAAGAAA
AGTCCTGAATGGTTCAATAAGGGAAGCATGGCCACGGCTGCCTTGCCAGAGAGCGGCTCT
TCCCTTGCCTTGCGAGCCCTGGGCTGGGGCTCACTTTACGCGTGGTGTGGTGTTGGCGTG
ATCAGCTTTGCCATCTGGAAAGCTTTAGGAGTTCACAGTGTGAAAGACTTTCGAAGTAAA
ATGCAATCAATATTTCCAGCAATTCCCAAGAACTCTGAATCGGCTGCTGAGTGGGAAGAA
GCATTGAAATCCAAGTGAGATGAGCATGATGGATGAAGTCCAGAATAACTGTTACAGAAA
AGGCTGGCTTCGGAGATGCCACAATAGCAAAGGGACTCGATTGATTTCTCCTCAGGAACA
CATGCAGATTGGTGACTGAACTTATGGGACGGATGACATTCAGTGTCCTCTTAGGAGGCC
AACAGTCATTTCTGTTGTGTTGTACTTTACAGTTGATTTGGTTATGTTCGTGTGTGTGTG
TGTTGGAGGGAAGGTAAAGTTTTTGCAAAGTTAGACTATTTAAAAATAATTACATGTAGG
AATTCCCACTGTGGTACAACAGAATTGGCAGCGTCTTGAGTGCTGGGATGCAGGTTCAAT
TCCTGGCCGGGCACAATGGGTTAAGGATCCAGTGTTAACTGCAGCTTCAGCTTAGGTCGC
ACCTGCAGCCTGAATCTGATCCCTGGCCCAGGAATTCCATGTGCAGGGGGTGGCCAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|55729892|emb|CAH91673.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|55729892|emb|CAH91673.1|

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

Help | Less info


               
               8-340, gnl|bosTau2|chr13 (41993789-41993468)
               

               
               8-340, gnl|Hg17|chr12 (61682511-61682843)
               


               
               388-734, gnl|bosTau2|chr13 (41993205-41992843)
               

               
               388-734, gnl|Hg17|chr6 (157684391-157684092)

Aligned organism(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-340, gnl|bosTau2|chr13 (41993789-41993468)
               

               
               8-340, gnl|Hg17|chr12 (61682511-61682843)
               


               
               388-734, gnl|bosTau2|chr13 (41993205-41992843)
               

               
               388-734, gnl|Hg17|chr6 (157684391-157684092)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               mcp (0.170648)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	8-340, gnl\|bosTau2\|chr13 (41993789-41993468)
	8-340, gnl\|Hg17\|chr12 (61682511-61682843)

	388-734, gnl\|bosTau2\|chr13 (41993205-41992843)
	388-734, gnl\|Hg17\|chr6 (157684391-157684092)