Ss1.1-Pig4-TMW8020O07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCTTGGAGATTACCTGAAGGCACTTAAGACGGAATTTACAATGGGGATGATTTTGCCAA CCAAAGCGATGGCAACCCAGGAAATGACTGTTAAGAGGAAACTGAGTGAGAATACCTTGC AGATTCAGGCCTCCTCTGCAGTGGCTCTGGGCGTGAGGATTCCCACGGTGGCACTGCACA TGACGGAAAGGTTTGACACAGCAGTTGAGCAACTGTACAGAATCTTCACTGTGAAGGATT TGGTGCAGAAATTTTCTAAATCTCCTGCTATATTAGAAGCTGAAAAGGGAGGGAAATTCC AAATGTTTGATGGAAATATCACTGGTGAATATATAGAATTGTTAACAAATAAAAAGATCG TCATGAAATGGAGATGTAGGAACTGGCCGGAAGAGCACTATGCAACAGTTGCACTGAATT TTGTGCCTACTGTACGGCAAACGGAATTACAATTGGACTGTAAAGGAGTTCCTGTCTGTA AAGAAGAGAACATGAAATTCTGTTGGCAGAAACAACATTTTGAAGAAATAAAAGGTTTAT TGCAGCTGACCACCCTAAATGGCTGAATTAGGTAGAAGATTTTATAAGGGCATTATCCTT TTGTAAGCAGAAAAAGTGTCAAGTTTACCTCTTCCCTATCATTTCCTTTTAAAAAAGAAA ACAAATAGTTTTAATTTATATTGGATGAAATCCATGAACTTAGAACCGAAAGCATTGGAT CTTTACTGTAACTAGACTCTCTGCATTGTTAAAAGCAAGCAACATGAAATCAGGTTTAAC TTTGCTTCGCATAGCTGCTCCTCTAGGAACAGACTGATTCCCTGAGTACAGATAGTTTAA GTGTCCCACTTGCTAAAGCTTGTCCTAACAAGTTTACTTTTAGCTGTAGTTTTAGTTCAG GAAGACAAAAAATAATGGCATGTTGATACTATTCCTTTATTTTATTTAGGGTTTTTAAGG TCTGTAGCTCTTAGGTTATGAAACAGTGGCATGTTGCATTCAGAAGCATGTTAAAGTGAG GGTGAGCAGGATGTGTAGTTACGCCTCTTCCTGTAGCAGTTATGAACTTTGGGGTGAAAG AGTCTATGAAAAAGTTACTTTATGGACTGTGTACATCCCCCCAGTCACAGTTTTCTCACT ACTGTCATCTGAGAAGACTGAAACAACGTATGTAAACAAATAAAAAGTCATCACAATCAG TTTAATTAAGTGCACAGAATAGCAATCAGTCATGTCAATAAAAATAAAACAATTATTTTT AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCTTGGAGATTACCTGAAGGCACTTAAGACGGAATTTACAATGGGGATGATTTTGCCAA CCAAAGCGATGGCAACCCAGGAAATGACTGTTAAGAGGAAACTGAGTGAGAATACCTTGC AGATTCAGGCCTCCTCTGCAGTGGCTCTGGGCGTGAGGATTCCCACGGTGGCACTGCACA TGACGGAAAGGTTTGACACAGCAGTTGAGCAACTGTACAGAATCTTCACTGTGAAGGATT TGGTGCAGAAATTTTCTAAATCTCCTGCTATATTAGAAGCTGAAAAGGGAGGGAAATTCC AAATGTTTGATGGAAATATCACTGGTGAATATATAGAATTGTTAACAAATAAAAAGATCG TCATGAAATGGAGATGTAGGAACTGGCCGGAAGAGCACTATGCAACAGTTGCACTGAATT TTGTGCCTACTGTACGGCAAACGGAATTACAATTGGACTGTAAAGGAGTTCCTGTCTGTA AAGAAGAGAACATGAAATTCTGTTGGCAGAAACAACATTTTGAAGAAATAAAAGGTTTAT TGCAGCTGACCACCCTAAATGGCTGAATTAGGTAGAAGATTTTATAAGGGCATTATCCTT TTGTAAGCAGAAAAAGTGTCAAGTTTACCTCTTCCCTATCATTTCCTTTTAAAAAAGAAA ACAAATAGTTTTAATTTATATTGGATGAAATCCATGAACTTAGAACCGAAAGCATTGGAT CTTTACTGTAACTAGACTCTCTGCATTGTTAAAAGCAAGCAACATGAAATCAGGTTTAAC TTTGCTTCGCATAGCTGCTCCTCTAGGAACAGACTGATTCCCTGAGTACAGATAGTTTAA GTGTCCCACTTGCTAAAGCTTGTCCTAACAAGTTTACTTTTAGCTGTAGTTTTAGTTCAG GAAGACAAAAAATAATGGCATGTTGATACTATTCCTTTATTTTATTTAGGGTTTTTAAGG TCTGTAGCTCTTAGGTTATGAAACAGTGGCATGTTGCATTCAGAAGCATGTTAAAGTGAG GGTGAGCAGGATGTGTAGTTACGCCTCTTCCTGTAGCAGTTATGAACTTTGGGGTGAAAG AGTCTATGAAAAAGTTACTTTATGGACTGTGTACATCCCCCCAGTCACAGTTTTCTCACT ACTGTCATCTGAGAAGACTGAAACAACGTATGTAAACAAATAAAAAGTCATCACAATCAG TTTAATTAAGTGCACAGAATAGCAATCAGTCATGTCAATAAAAATAAAACAATTATTTTT AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 121-239, gnl|bosTau2|chr13 (58255383-58255265) | |
| 121-239, gnl|canFam2|chr10 (64416497-64416591) | |
| 121-239, gnl|danRer3|chr17 (47539441-47539512) | |
| 121-239, gnl|galGal2|chr3 (239264-239181) | |
| 121-239, gnl|hg17|chr1 (46920452-46920534) | |
| 121-239, gnl|Hg17|chr2 (61324286-61324404) | |
| 121-239, gnl|mm7|chr11 (23443585-23443506) | |
| 121-239, gnl|Mm7|chr11 (23443596-23443481) | |
| 121-239, gnl|monDom2|scaffold_1 (26056375-26056464) | |
| 121-239, gnl|oryCun1|scaffold_203285 (19702-19784) | |
| 121-239, gnl|panTro1|chr1_random (66665027-66664945) | |
| 121-239, gnl|rheMac2|chr1 (49667452-49667534) | |
| 121-239, gnl|rn3|chr14 (104447339-104447257) | |
| 240-344, gnl|bosTau2|chr13 (58254888-58254784) | |
| 240-344, gnl|canFam2|chr10 (64417007-64417088) | |
| 240-344, gnl|danRer3|chr17 (47539527-47539592) | |
| 240-344, gnl|echTel1|scaffold_165356 (3375-3427) | |
| 240-344, gnl|galGal2|chr3 (238002-237921) | |
| 240-344, gnl|hg17|chr1 (46920559-46920640) | |
| 240-344, gnl|Hg17|chr2 (61324766-61324870) | |
| 240-344, gnl|mm7|chr11 (23443121-23443040) | |
| 240-344, gnl|Mm7|chr11 (23443120-23443016) | |
| 240-344, gnl|monDom2|scaffold_1 (26057111-26057192) | |
| 240-344, gnl|oryCun1|scaffold_203285 (20121-20202) | |
| 240-344, gnl|panTro1|chr1_random (66664920-66664839) | |
| 240-344, gnl|rheMac2|chr1 (49667559-49667704) | |
| 240-344, gnl|rn3|chr14 (104446877-104446796) | |
| 392-1109, gnl|bosTau2|chr13 (58254047-58253329) | |
| 392-1109, gnl|Hg17|chr2 (61325401-61326138) | |
| 392-1109, gnl|Mm7|chr11 (23442578-23441911) | |
| 1111-1261, gnl|bosTau2|chr13 (58253292-58253142) | |
| 1111-1261, gnl|canFam2|chr10 (64418610-64418780) | |
| 1111-1261, gnl|galGal2|chr3 (233216-233054) | |
| 1111-1261, gnl|hg17|chr1 (46921713-46921874) | |
| 1111-1261, gnl|Hg17|chr2 (61326177-61326337) | |
| 1111-1261, gnl|loxAfr1|scaffold_7142 (79782-79937) | |
| 1111-1261, gnl|mm7|chr11 (23441895-23441743) | |
| 1111-1261, gnl|Mm7|chr11 (23441878-23441742) | |
| 1111-1261, gnl|monDom2|scaffold_1 (26059594-26059775) | |
| 1111-1261, gnl|oryCun1|scaffold_203285 (22205-22365) | |
| 1111-1261, gnl|panTro1|chr1_random (66663757-66663596) | |
| 1111-1261, gnl|rheMac2|chr1 (49668788-49668949) | |
| 1111-1261, gnl|rn3|chr14 (104445543-104445391) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 121-239, gnl|bosTau2|chr13 (58255383-58255265) | |
| 121-239, gnl|canFam2|chr10 (64416497-64416591) | |
| 121-239, gnl|danRer3|chr17 (47539441-47539512) | |
| 121-239, gnl|galGal2|chr3 (239264-239181) | |
| 121-239, gnl|hg17|chr1 (46920452-46920534) | |
| 121-239, gnl|Hg17|chr2 (61324286-61324404) | |
| 121-239, gnl|mm7|chr11 (23443585-23443506) | |
| 121-239, gnl|Mm7|chr11 (23443596-23443481) | |
| 121-239, gnl|monDom2|scaffold_1 (26056375-26056464) | |
| 121-239, gnl|oryCun1|scaffold_203285 (19702-19784) | |
| 121-239, gnl|panTro1|chr1_random (66665027-66664945) | |
| 121-239, gnl|rheMac2|chr1 (49667452-49667534) | |
| 121-239, gnl|rn3|chr14 (104447339-104447257) | |
| 240-344, gnl|bosTau2|chr13 (58254888-58254784) | |
| 240-344, gnl|canFam2|chr10 (64417007-64417088) | |
| 240-344, gnl|danRer3|chr17 (47539527-47539592) | |
| 240-344, gnl|echTel1|scaffold_165356 (3375-3427) | |
| 240-344, gnl|galGal2|chr3 (238002-237921) | |
| 240-344, gnl|hg17|chr1 (46920559-46920640) | |
| 240-344, gnl|Hg17|chr2 (61324766-61324870) | |
| 240-344, gnl|mm7|chr11 (23443121-23443040) | |
| 240-344, gnl|Mm7|chr11 (23443120-23443016) | |
| 240-344, gnl|monDom2|scaffold_1 (26057111-26057192) | |
| 240-344, gnl|oryCun1|scaffold_203285 (20121-20202) | |
| 240-344, gnl|panTro1|chr1_random (66664920-66664839) | |
| 240-344, gnl|rheMac2|chr1 (49667559-49667704) | |
| 240-344, gnl|rn3|chr14 (104446877-104446796) | |
| 392-1109, gnl|bosTau2|chr13 (58254047-58253329) | |
| 392-1109, gnl|Hg17|chr2 (61325401-61326138) | |
| 392-1109, gnl|Mm7|chr11 (23442578-23441911) | |
| 1111-1261, gnl|bosTau2|chr13 (58253292-58253142) | |
| 1111-1261, gnl|canFam2|chr10 (64418610-64418780) | |
| 1111-1261, gnl|galGal2|chr3 (233216-233054) | |
| 1111-1261, gnl|hg17|chr1 (46921713-46921874) | |
| 1111-1261, gnl|Hg17|chr2 (61326177-61326337) | |
| 1111-1261, gnl|loxAfr1|scaffold_7142 (79782-79937) | |
| 1111-1261, gnl|mm7|chr11 (23441895-23441743) | |
| 1111-1261, gnl|Mm7|chr11 (23441878-23441742) | |
| 1111-1261, gnl|monDom2|scaffold_1 (26059594-26059775) | |
| 1111-1261, gnl|oryCun1|scaffold_203285 (22205-22365) | |
| 1111-1261, gnl|panTro1|chr1_random (66663757-66663596) | |
| 1111-1261, gnl|rheMac2|chr1 (49668788-49668949) | |
| 1111-1261, gnl|rn3|chr14 (104445543-104445391) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| sag (0.36543) | |
| lin (0.291206) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ldo (0.0970026) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.36543) | |
| lin (0.291206) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| nje (0.16592) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| sug (0.127291) | |
| tra (0.123092) | |
| ldo (0.0970026) |