Non-Coding RNA Search

Ss1.1-Pig4-TMW8020O09.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTAGAAAAAATACCTTTTTATTAATTATTAGGAATAATCCATT
CATTTAATGCAGGGTGTGTTTTGGGGAAGGTCAGGTACTGCCAGATGGATCAGGGGAAAC
GTGCAAGAGGAACAGTGAGAGGGGGGGTGGTCCCCCACTTGCCACAAACTATAAACAGCA
AAATAAACTCAGAGAATCACAAATAATAGGGTCCTTCCTCAAGTCTCCTCCCATCTGTTC
TTCCAGAATGAGTCCCAGTGTGGTCCCTAGAGGTGCCAGGGCATCTGGAAGTTGGGGGCC
GGGAGCGGGGTGCAGTGTGTGGCCTCAAAGTTGTGCAGATGCTTCTGAGCCAGAAACAAG
GCCAGCTGCCGTCTGCCATCTGCACTCATGTCCTCCCCCACGCTCCAGGGGAACTCGGGC
CCGTGCTCGGCCTGGTAGGAGCGGAGGACCGACAGGCACCAGTCCTCCTCCACTTCCCAT
CGGCTGTAAATTGAGGCTTCCTCCAGCTGTGAGGAGGCCTCCAGCCACTGCCTCACCACT
CGAAGCCCCTCCTCTGCCATCACACGGGGATACCGATGCTGCAGCAGCTTCAGCAGGAGG
TCATTGCCTCGATTCGACATGACATCCTCAGGAACCGTGGTGGTGATGATCTCATCCTTG
GTTCTTCGGATCAGCAGCACAGGGCCCTGGTACCTGCACAGCTGTTCCGCGTTGTTTAGA
TTGAGATGCTGCCTCACAGTCCTGGTCACCAGGCCCCTCCAGCTGTCTGGCATAACCTTC
AAGGCCAAGGGCACCAGGTCATCGAAGGAGGCATCCAGGATCACGGCGCTAATGTCTGGG
TAGGACATGGCTGCCCATGTAGCAGTGAAGCCGCCGATGGACCAGGCATAGATGATGATG
TCCTGGGGCTGGAAGCCCAGGCGGTGGATGGCAAACTGGACCACCACATCCATGGCATTG
GCCTCGTTCTGTGGGAACGGCACCCCCGTGCTTCCAGCAAAGCCGGGATGGTTCCAGCCC
AGGACTGAATATCCAGCTTCCAGGGGGGTGGAGACGCAGCCCACCTCATAGAAGCCTGCG
TTCCCCTCACAGCAGATCACCAGCTTCTGTCCCTGGGGCTCGGCTGTCCCCCGCCGGTCC
ACAAACATGGTGTCAATCTCGTTGCCGTCACAGGCCAGCAGCTTTGCCCGGCGTCCATTA
CACTCTTCCACCAGCCGGGCCTGGCCCTGCAGCAGCACAGGCATGAGGGCCTTCTGGAGC
AGGTACACGGAGCCCGGATACAGCATCCGGCGGCCCAGGGTGTGTGCCACCAGGTAGCTG
GTGATCTGACAAGGCAGCTTCTTGACCCGGTTGAGGAGGGTGTCTGCCGTCCCCCGGTGC
AGGGGCTCTGGGCGGAGCAGGGCCACGCCCCGGCGGGAAGGGCCCCCCCGGGACCCCTTC
CGGCTGCTGGGTTCTTCCCAGTGGAAGTCGACTGGCCAGCTCCTGAAGTCAAAGTTGTAG
TTGGCGAGCTGCCTCTTGTTCTCTGCGGACTGGTTCCTATGTGCTGCCTCCAAGATGGTG
ATGAACTGCCGGTACTGGGGGTTGGTCCAGCGGCCAATGCCTCGGAGGCAGGCCACTCCC
GCCAGCAGTAGAAGCAATGTCCCGGCATAGTGAGAAAACGGCACCACTTTGGACAAACTC
AAGTAACCTTTCCTGTACAAGTAGAAGAAGGCGAAGGGAGAGGAGTAATAAGAGATGGAC
CAGAAGACTGAAGCCAGCGCGAGGATGCTGTCAGCATGTTTCTCGAGGGCACGGGGCTGA
TAATATGTATCCCAGGAGCTGGAAGAGGCGGTAGTGACTGAAGTTGGAGTCCCAGGGACA
CCAGACGCGGCCCTTTCTGAGTCCCTTTCCCGGTAGATTTTGTAGAGCCGGGGTCCTAGG
ACGCAGCTCAGCAGCTTCGCCATAGCCCCGGCCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTAGAAAAAATACCTTTTTATTAATTATTAGGAATAATCCATT
CATTTAATGCAGGGTGTGTTTTGGGGAAGGTCAGGTACTGCCAGATGGATCAGGGGAAAC
GTGCAAGAGGAACAGTGAGAGGGGGGGTGGTCCCCCACTTGCCACAAACTATAAACAGCA
AAATAAACTCAGAGAATCACAAATAATAGGGTCCTTCCTCAAGTCTCCTCCCATCTGTTC
TTCCAGAATGAGTCCCAGTGTGGTCCCTAGAGGTGCCAGGGCATCTGGAAGTTGGGGGCC
GGGAGCGGGGTGCAGTGTGTGGCCTCAAAGTTGTGCAGATGCTTCTGAGCCAGAAACAAG
GCCAGCTGCCGTCTGCCATCTGCACTCATGTCCTCCCCCACGCTCCAGGGGAACTCGGGC
CCGTGCTCGGCCTGGTAGGAGCGGAGGACCGACAGGCACCAGTCCTCCTCCACTTCCCAT
CGGCTGTAAATTGAGGCTTCCTCCAGCTGTGAGGAGGCCTCCAGCCACTGCCTCACCACT
CGAAGCCCCTCCTCTGCCATCACACGGGGATACCGATGCTGCAGCAGCTTCAGCAGGAGG
TCATTGCCTCGATTCGACATGACATCCTCAGGAACCGTGGTGGTGATGATCTCATCCTTG
GTTCTTCGGATCAGCAGCACAGGGCCCTGGTACCTGCACAGCTGTTCCGCGTTGTTTAGA
TTGAGATGCTGCCTCACAGTCCTGGTCACCAGGCCCCTCCAGCTGTCTGGCATAACCTTC
AAGGCCAAGGGCACCAGGTCATCGAAGGAGGCATCCAGGATCACGGCGCTAATGTCTGGG
TAGGACATGGCTGCCCATGTAGCAGTGAAGCCGCCGATGGACCAGGCATAGATGATGATG
TCCTGGGGCTGGAAGCCCAGGCGGTGGATGGCAAACTGGACCACCACATCCATGGCATTG
GCCTCGTTCTGTGGGAACGGCACCCCCGTGCTTCCAGCAAAGCCGGGATGGTTCCAGCCC
AGGACTGAATATCCAGCTTCCAGGGGGGTGGAGACGCAGCCCACCTCATAGAAGCCTGCG
TTCCCCTCACAGCAGATCACCAGCTTCTGTCCCTGGGGCTCGGCTGTCCCCCGCCGGTCC
ACAAACATGGTGTCAATCTCGTTGCCGTCACAGGCCAGCAGCTTTGCCCGGCGTCCATTA
CACTCTTCCACCAGCCGGGCCTGGCCCTGCAGCAGCACAGGCATGAGGGCCTTCTGGAGC
AGGTACACGGAGCCCGGATACAGCATCCGGCGGCCCAGGGTGTGTGCCACCAGGTAGCTG
GTGATCTGACAAGGCAGCTTCTTGACCCGGTTGAGGAGGGTGTCTGCCGTCCCCCGGTGC
AGGGGCTCTGGGCGGAGCAGGGCCACGCCCCGGCGGGAAGGGCCCCCCCGGGACCCCTTC
CGGCTGCTGGGTTCTTCCCAGTGGAAGTCGACTGGCCAGCTCCTGAAGTCAAAGTTGTAG
TTGGCGAGCTGCCTCTTGTTCTCTGCGGACTGGTTCCTATGTGCTGCCTCCAAGATGGTG
ATGAACTGCCGGTACTGGGGGTTGGTCCAGCGGCCAATGCCTCGGAGGCAGGCCACTCCC
GCCAGCAGTAGAAGCAATGTCCCGGCATAGTGAGAAAACGGCACCACTTTGGACAAACTC
AAGTAACCTTTCCTGTACAAGTAGAAGAAGGCGAAGGGAGAGGAGTAATAAGAGATGGAC
CAGAAGACTGAAGCCAGCGCGAGGATGCTGTCAGCATGTTTCTCGAGGGCACGGGGCTGA
TAATATGTATCCCAGGAGCTGGAAGAGGCGGTAGTGACTGAAGTTGGAGTCCCAGGGACA
CCAGACGCGGCCCTTTCTGAGTCCCTTTCCCGGTAGATTTTGTAGAGCCGGGGTCCTAGG
ACGCAGCTCAGCAGCTTCGCCATAGCCCCGGCCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55961600|emb|CAI17807.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55961600|emb|CAI17807.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               237-1956, - strand, RNAz p=0.811401
               

               
               803-922, - strand, RNAz p=0.565688
               

               
               1237-1356, + strand, RNAz p=0.739981

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-1956, - strand, RNAz p=0.811401
               

               
               803-922, - strand, RNAz p=0.565688
               

               
               1237-1356, + strand, RNAz p=0.739981

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_021160, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_021160, -

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               19-354, gnl|bosTau2|chr23 (23341971-23342301)
               

               
               19-354, gnl|Hg17|chr6 (31762717-31763055)
               

               
               19-354, gnl|Mm7|chr17 (33200074-33199756)
               


               
               434-1359, gnl|bosTau2|chr13 (35245874-35246823)
               

               
               434-1359, gnl|Hg17|chr20 (61964541-61963592)
               

               
               434-1359, gnl|Mm7|chr2 (181995437-181994476)
               


               
               1811-1956, gnl|bosTau2|chr23 (23354090-23354235)
               

               
               1811-1956, gnl|Hg17|chr6 (31778905-31779050)
               

               
               1811-1956, gnl|Mm7|chr17 (33186547-33186402)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-354, gnl|bosTau2|chr23 (23341971-23342301)
               

               
               19-354, gnl|Hg17|chr6 (31762717-31763055)
               

               
               19-354, gnl|Mm7|chr17 (33200074-33199756)
               


               
               434-1359, gnl|bosTau2|chr13 (35245874-35246823)
               

               
               434-1359, gnl|Hg17|chr20 (61964541-61963592)
               

               
               434-1359, gnl|Mm7|chr2 (181995437-181994476)
               


               
               1811-1956, gnl|bosTau2|chr23 (23354090-23354235)
               

               
               1811-1956, gnl|Hg17|chr6 (31778905-31779050)
               

               
               1811-1956, gnl|Mm7|chr17 (33186547-33186402)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cty (0.62448)
               

               
               cov (0.528611)
               

               
               fcc (0.39557)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.62448)
               

               
               cov (0.528611)
               

               
               fcc (0.39557)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	237-1956, - strand, RNAz p=0.811401
	803-922, - strand, RNAz p=0.565688
	1237-1356, + strand, RNAz p=0.739981

	19-354, gnl\|bosTau2\|chr23 (23341971-23342301)
	19-354, gnl\|Hg17\|chr6 (31762717-31763055)
	19-354, gnl\|Mm7\|chr17 (33200074-33199756)

	434-1359, gnl\|bosTau2\|chr13 (35245874-35246823)
	434-1359, gnl\|Hg17\|chr20 (61964541-61963592)
	434-1359, gnl\|Mm7\|chr2 (181995437-181994476)

	1811-1956, gnl\|bosTau2\|chr23 (23354090-23354235)
	1811-1956, gnl\|Hg17\|chr6 (31778905-31779050)
	1811-1956, gnl\|Mm7\|chr17 (33186547-33186402)

	cty (0.62448)
	cov (0.528611)
	fcc (0.39557)
	pla (0.267344)
	fty (0.17584)
	mcp (0.170648)
	csp (0.161186)
	hyp (0.142837)
	nmm (0.132802)
	ebs (0.118301)
	nbm (0.0993246)
	jej (0.0989218)