Non-Coding RNA Search

Ss1.1-Pig4-TMW8020O11.5

Sequence:


               
               GCCACTGGCCACATTGGATAGATCTTCTGAAGAGCCTTTGGGACTTCTGGTGAATCCCAA
CCTCTACCAGTCCCCTCCCCAGTGGATAGACCAGACAGGTGTAGCCTCACAGAAGAAGGC
TTTCCATTCAGCAGGATCAGGACTAGAGTTCAACTCAGGTCGACATCCGTTTCGAATCCA
GGACCAAGAATTTCAGGAAGGCTTTGATGGTGGCTGGTGCCTCTCTATGCATCAGCCTTG
GGCTTCTCTGCTTGTCAGAGGGATTAAAAGGGTGGAGGGCAGAAGCTGGTACACCCCTCA
CAGAGGACGACTTTGGATAGCAGCCACAGCCAAAAGACCTTCCCCTCAAGAAGTCTCAGA
ACTCCAGACTACCTATCTTGTTCTTCGTGGAAAAGATGTGGAATTTCCAAATGACTATCC
ATCGGGTTGTCTTCTGGGCTGTGTAGACCTAATTGACTGCTTGTCCCAGAAGCAATTTAA
AGATCAGTATCCAGACATGAGTCAAGAATCTGATTCTCCATTTGTTTTCATCTGCACAAA
TCCCCAGGAAATGATTGTGAAGTTTCCTATTAAAGGAAATCCAAAAATCTGGAAACTGGA
TTCCAAGATCCATCAAGGAGCAAAGAAGGGGTTAATGAAGCAGAATAAAGCTGTCTGACC
CAGGAGAAAAGGAACTATACAGCATAGTGGAGTGTTGTGTATTAAACTTGCTATCCACTG
GTCCTTTGGAATTGAAGCAGTAGAAATCTAAAGGCTTGACATCAGGCTTGAACCTCTCAG
AATTTAAAGTCTTATCAAAATATGTATATTTTTCTTAAAGAATGGGATTCATTATGTAAT
GGGTCAAAATCTTTGAATACATTATTTATAAAAACTGACTTTAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACTGGCCACATTGGATAGATCTTCTGAAGAGCCTTTGGGACTTCTGGTGAATCCCAA
CCTCTACCAGTCCCCTCCCCAGTGGATAGACCAGACAGGTGTAGCCTCACAGAAGAAGGC
TTTCCATTCAGCAGGATCAGGACTAGAGTTCAACTCAGGTCGACATCCGTTTCGAATCCA
GGACCAAGAATTTCAGGAAGGCTTTGATGGTGGCTGGTGCCTCTCTATGCATCAGCCTTG
GGCTTCTCTGCTTGTCAGAGGGATTAAAAGGGTGGAGGGCAGAAGCTGGTACACCCCTCA
CAGAGGACGACTTTGGATAGCAGCCACAGCCAAAAGACCTTCCCCTCAAGAAGTCTCAGA
ACTCCAGACTACCTATCTTGTTCTTCGTGGAAAAGATGTGGAATTTCCAAATGACTATCC
ATCGGGTTGTCTTCTGGGCTGTGTAGACCTAATTGACTGCTTGTCCCAGAAGCAATTTAA
AGATCAGTATCCAGACATGAGTCAAGAATCTGATTCTCCATTTGTTTTCATCTGCACAAA
TCCCCAGGAAATGATTGTGAAGTTTCCTATTAAAGGAAATCCAAAAATCTGGAAACTGGA
TTCCAAGATCCATCAAGGAGCAAAGAAGGGGTTAATGAAGCAGAATAAAGCTGTCTGACC
CAGGAGAAAAGGAACTATACAGCATAGTGGAGTGTTGTGTATTAAACTTGCTATCCACTG
GTCCTTTGGAATTGAAGCAGTAGAAATCTAAAGGCTTGACATCAGGCTTGAACCTCTCAG
AATTTAAAGTCTTATCAAAATATGTATATTTTTCTTAAAGAATGGGATTCATTATGTAAT
GGGTCAAAATCTTTGAATACATTATTTATAAAAACTGACTTTAAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61828605|ref|XP_595270.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61828605|ref|XP_595270.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               591-709, + strand, RNAz p=0.750735

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               591-709, + strand, RNAz p=0.750735

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_016213, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_016213, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               591-888, gnl|bosTau2|chr10 (30386281-30386583)
               

               
               591-888, gnl|Hg17|chr15 (62534249-62534550)
               

               
               591-888, gnl|Mm7|chr9 (65863089-65862791)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               591-888, gnl|bosTau2|chr10 (30386281-30386583)
               

               
               591-888, gnl|Hg17|chr15 (62534249-62534550)
               

               
               591-888, gnl|Mm7|chr9 (65863089-65862791)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               cty (0.10408)

	591-888, gnl\|bosTau2\|chr10 (30386281-30386583)
	591-888, gnl\|Hg17\|chr15 (62534249-62534550)
	591-888, gnl\|Mm7\|chr9 (65863089-65862791)

	hea (0.204499)
	sag (0.182715)
	gul (0.177588)
	rec (0.17307)
	ski (0.146735)
	ova (0.129132)
	ret (0.128733)
	thg (0.126791)
	cty (0.10408)