Non-Coding RNA Search

Ss1.1-Pig4-TMW8020O19.5

Sequence:


               
               AGCCTCCGCGCTGCTCTCCGCACAGAGCTGCCGTGGCCGTGGCTGAGCGAGCCCTGGGTG
GGGCGAGCAACCTCTTCGACACACACAGCGCTCCTGGCCATGGCGCAGCGCTTCCGGCAG
AACCGCAGTGAACTCATGACCACCTGGACCTGTGGGTCTATGACGGGGGGAGGGGGGGCC
CAGCCCTGTCCCTGGATTCCGGGGAGCAGATGCTGCGGGCGACCTGACCGGCGACACTGT
CTTCAGCTACTGCTGCAAGGCTCTGCAAGACGCTGCTGGCCTGGCGCCAGCGCTGGAAGT
CCTTCCTGCACTTGGAGACCACTGAGCCGCCCTCTGGCCCTGGATCGCCATGGAGGAGGG
CTTCCAACTGGTGTGTGAGCTGGGCACGCTGGACTGGATCTACCACGAGCCAAGCCCAAG
TGCCTGGCTCCCAAAGACATGCCTGTGGCGGTGCCTACTGACGGCCGCGCCCTCGGAGCT
GTCCCTCTCCCTGGTCAGCCTGCTGGTCAAGGGCATGACGGTGCTGAAGATCCAGACCAT
GGCCGCCAAGCTCCTGCTGGGGCCCAACCCGATGAACACAAATCGTGGGCTGGCTGCTGA
GCCGCGGTGTGTCCAGGGAGCGGGTGGACCGGTGAACCACCAGGGTCCTCCTGGAGCTGC
CCATCAAAGGGGCCAAGCACAGCCGGGGCTGAGGCCCCCCACGTGCTGGTGGAGGAGCAG
CCCCTGCCTCCCCGGTCCTCTGACCAGGCCTGCAGGGAGGAGCTGCAGTGCACCAGGACT
ACGCACCCCACAATCCAGGCCACTTTCTGCTTGGTGCTGGGAGTGGAGCAGGGGCCCATG
TCGGAGAGACACAAAGTCTTGGCCAAAGCGCCTCCTGATCGTCCCCAGGATAGACAGAGG
GACAGCACCCCCAGCTCCAGCCATCTCCTGCCAGGCCAGACCCTGACCACGCATCCTGAA
AACCTCGGAGAGGGTCCTTGCCCCCGCCGCCGTGGGCATCACTGGCCTGAGCTGGTGGAG
AGCAGCCAGTTGGCTGGCGTTGCTGGTTGAGGGGAGAGAGTCCGTTAAATATTTCAGTCT
GTTACACCTTAGCCTGATAAGCGGGGTGGGTGGGCACCCACCGTTGTGCCACACGGGCCC
CCAACGCACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTCCGCGCTGCTCTCCGCACAGAGCTGCCGTGGCCGTGGCTGAGCGAGCCCTGGGTG
GGGCGAGCAACCTCTTCGACACACACAGCGCTCCTGGCCATGGCGCAGCGCTTCCGGCAG
AACCGCAGTGAACTCATGACCACCTGGACCTGTGGGTCTATGACGGGGGGAGGGGGGGCC
CAGCCCTGTCCCTGGATTCCGGGGAGCAGATGCTGCGGGCGACCTGACCGGCGACACTGT
CTTCAGCTACTGCTGCAAGGCTCTGCAAGACGCTGCTGGCCTGGCGCCAGCGCTGGAAGT
CCTTCCTGCACTTGGAGACCACTGAGCCGCCCTCTGGCCCTGGATCGCCATGGAGGAGGG
CTTCCAACTGGTGTGTGAGCTGGGCACGCTGGACTGGATCTACCACGAGCCAAGCCCAAG
TGCCTGGCTCCCAAAGACATGCCTGTGGCGGTGCCTACTGACGGCCGCGCCCTCGGAGCT
GTCCCTCTCCCTGGTCAGCCTGCTGGTCAAGGGCATGACGGTGCTGAAGATCCAGACCAT
GGCCGCCAAGCTCCTGCTGGGGCCCAACCCGATGAACACAAATCGTGGGCTGGCTGCTGA
GCCGCGGTGTGTCCAGGGAGCGGGTGGACCGGTGAACCACCAGGGTCCTCCTGGAGCTGC
CCATCAAAGGGGCCAAGCACAGCCGGGGCTGAGGCCCCCCACGTGCTGGTGGAGGAGCAG
CCCCTGCCTCCCCGGTCCTCTGACCAGGCCTGCAGGGAGGAGCTGCAGTGCACCAGGACT
ACGCACCCCACAATCCAGGCCACTTTCTGCTTGGTGCTGGGAGTGGAGCAGGGGCCCATG
TCGGAGAGACACAAAGTCTTGGCCAAAGCGCCTCCTGATCGTCCCCAGGATAGACAGAGG
GACAGCACCCCCAGCTCCAGCCATCTCCTGCCAGGCCAGACCCTGACCACGCATCCTGAA
AACCTCGGAGAGGGTCCTTGCCCCCGCCGCCGTGGGCATCACTGGCCTGAGCTGGTGGAG
AGCAGCCAGTTGGCTGGCGTTGCTGGTTGAGGGGAGAGAGTCCGTTAAATATTTCAGTCT
GTTACACCTTAGCCTGATAAGCGGGGTGGGTGGGCACCCACCGTTGTGCCACACGGGCCC
CCAACGCACTAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               45-529, gnl|bosTau2|chr18 (52048695-52048163)
               

               
               45-529, gnl|Hg17|chr19 (55993988-55993503)
               

               
               45-529, gnl|Mm7|chr7 (40424501-40425057)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-529, gnl|bosTau2|chr18 (52048695-52048163)
               

               
               45-529, gnl|Hg17|chr19 (55993988-55993503)
               

               
               45-529, gnl|Mm7|chr7 (40424501-40425057)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               eli (0.151814)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	45-529, gnl\|bosTau2\|chr18 (52048695-52048163)
	45-529, gnl\|Hg17\|chr19 (55993988-55993503)
	45-529, gnl\|Mm7\|chr7 (40424501-40425057)

	fty (0.17584)
	mcp (0.170648)
	eli (0.151814)
	eep (0.122564)
	ecc (0.115035)