Ss1.1-Pig4-TMW8020P05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGAGCAACAGCCTCCAGCATCGGCAGAACAAATTCTCTTGACCTCCAGAAAGTATCAG GTAATCATCAGATTATAGGACAGCCTCAGATTGCTCTTACTGGACATGATCAGGGGCCGT TAGTTCAAGAACCAGATGGACTAATGGTTGCAACTCCAGCCCAGACGCTTACCGACACTC TTGATGACCTGATAGCAGCGGTGAGTAGCAGAGTGCCCACTGGTTCGAACAATTCTTCTC AGACCACAGAATGTCTTACTCCTGAACCCTGTTCACAGTCTCCAAGCAATGTGGCTTCCC AGTCTATTCCCTCTGTGTACCCTTCAGTTGACATTGATGCACATACCGAGAGCAATCATG ACACAGCATTAACACTAGCTTGTGCAGGTGGCCATGAAGAACTTGTATCTGTACTCATTG CACGAGATGCTAAAATTGAACACAGAGACAAAAAAGGTTTCACACCACTGATCCTGGCGG CAACAGCAGGGCATGTTGGAGTTGTTGAAATCCTTTTAGATAAAGGTGGCGATATAGAAG CACAATCTGAGAGAACTAAGGATACTCCACTTTCACTGGCATGTTCTGGTGGACGTCAGG AAGTGGTAGACTTGCTGCTGGCTCGGGGTGCAAATAAAGAGCATAGGAACGTGTCTGATT ATACACCACTGAGTCTAGCTGCATCTGGAGGATATGTTAACATCATTAAGATTCTGCTTA ATGCTGGGGCAGAAATTAATTCAAGGACTGGGAGTAAACTAGGTATTTCTCCCCTGATGT TGGCTGCAATGAATGGACATGTTCCTGCAGTGAAACTGCTGCTTGATATGGGTTCAGACA TTAACGCCCAAATTGCTTCTGGACCGAAAAGCCAATGTTGAACACAGGGCAAAGACTGGT CTTACCCCCTTGATGGAAGCTGCTTCTGGGGGATATGCTGAGGTGGGCAGAGTTCTCCTA GATAAAGGAGCAGATGTCAATGCTCCCCCTGTGCCTTCCTCAAGAGATACCGCTTTAACA ATAGCAGCAGACATAGGTCACTACAAATTTTGTGAGCTCCTAATTAATAGAGGAGCCCAT ATTGATGTTCGTAACAAGAAGGGAAACACACCCCTTTGGTTGGCATCCAATGGTGGTCAT TTTGATGTGGTACAGTTGCTAGTGCGAGCAGGTGCTGATGTGGATGCAGCAGATAACCGG AAAATCACACCTCTTATGTCAGCATTTCGCAAGGGTCATGTAAAAGTTGTTCAGTATTTG GTGAAGGAAGTCAATCAGTTCCCTTCCGATATAGAATGCATGAGATACATAGCAACAATC ACAGATAAGGAACTATTGAAAAAATGTCACCAATGCGTTGAGACAATTGTGAAGGCTAAA GACCAGCAAGCTGCAGAAGCAAATAAGAATGCAAGTATTCTTTTAAAGGAACTTGATCTG GAAAAGTCAAGAGAGGAGAGCAGAAAGCAGGCTCTTGCAGCTAAAAGAGAGAAGAGAAAA GAAAAGCGAAAAAAGAAGAAAGAGGAGCAGAAAAGGAAGCAGGAAGAAGATGAGGAAAAC AAACCTAAGGAGAATTCAGAACTACCAGAGGATGAAGATGAAGAGGAGAATGATGAAGAT GTGGAGCAAGAAGTGCCCATAGAACCTCCGAGTGCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGAGCAACAGCCTCCAGCATCGGCAGAACAAATTCTCTTGACCTCCAGAAAGTATCAG GTAATCATCAGATTATAGGACAGCCTCAGATTGCTCTTACTGGACATGATCAGGGGCCGT TAGTTCAAGAACCAGATGGACTAATGGTTGCAACTCCAGCCCAGACGCTTACCGACACTC TTGATGACCTGATAGCAGCGGTGAGTAGCAGAGTGCCCACTGGTTCGAACAATTCTTCTC AGACCACAGAATGTCTTACTCCTGAACCCTGTTCACAGTCTCCAAGCAATGTGGCTTCCC AGTCTATTCCCTCTGTGTACCCTTCAGTTGACATTGATGCACATACCGAGAGCAATCATG ACACAGCATTAACACTAGCTTGTGCAGGTGGCCATGAAGAACTTGTATCTGTACTCATTG CACGAGATGCTAAAATTGAACACAGAGACAAAAAAGGTTTCACACCACTGATCCTGGCGG CAACAGCAGGGCATGTTGGAGTTGTTGAAATCCTTTTAGATAAAGGTGGCGATATAGAAG CACAATCTGAGAGAACTAAGGATACTCCACTTTCACTGGCATGTTCTGGTGGACGTCAGG AAGTGGTAGACTTGCTGCTGGCTCGGGGTGCAAATAAAGAGCATAGGAACGTGTCTGATT ATACACCACTGAGTCTAGCTGCATCTGGAGGATATGTTAACATCATTAAGATTCTGCTTA ATGCTGGGGCAGAAATTAATTCAAGGACTGGGAGTAAACTAGGTATTTCTCCCCTGATGT TGGCTGCAATGAATGGACATGTTCCTGCAGTGAAACTGCTGCTTGATATGGGTTCAGACA TTAACGCCCAAATTGCTTCTGGACCGAAAAGCCAATGTTGAACACAGGGCAAAGACTGGT CTTACCCCCTTGATGGAAGCTGCTTCTGGGGGATATGCTGAGGTGGGCAGAGTTCTCCTA GATAAAGGAGCAGATGTCAATGCTCCCCCTGTGCCTTCCTCAAGAGATACCGCTTTAACA ATAGCAGCAGACATAGGTCACTACAAATTTTGTGAGCTCCTAATTAATAGAGGAGCCCAT ATTGATGTTCGTAACAAGAAGGGAAACACACCCCTTTGGTTGGCATCCAATGGTGGTCAT TTTGATGTGGTACAGTTGCTAGTGCGAGCAGGTGCTGATGTGGATGCAGCAGATAACCGG AAAATCACACCTCTTATGTCAGCATTTCGCAAGGGTCATGTAAAAGTTGTTCAGTATTTG GTGAAGGAAGTCAATCAGTTCCCTTCCGATATAGAATGCATGAGATACATAGCAACAATC ACAGATAAGGAACTATTGAAAAAATGTCACCAATGCGTTGAGACAATTGTGAAGGCTAAA GACCAGCAAGCTGCAGAAGCAAATAAGAATGCAAGTATTCTTTTAAAGGAACTTGATCTG GAAAAGTCAAGAGAGGAGAGCAGAAAGCAGGCTCTTGCAGCTAAAAGAGAGAAGAGAAAA GAAAAGCGAAAAAAGAAGAAAGAGGAGCAGAAAAGGAAGCAGGAAGAAGATGAGGAAAAC AAACCTAAGGAGAATTCAGAACTACCAGAGGATGAAGATGAAGAGGAGAATGATGAAGAT GTGGAGCAAGAAGTGCCCATAGAACCTCCGAGTGCG |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 30-198, gnl|bosTau2|chr7 (30616836-30616668) | |
| 30-198, gnl|Hg17|chr5 (139856879-139857047) | |
| 30-198, gnl|Mm7|chr18 (37001337-37001505) | |
| 1069-1234, gnl|bosTau2|chr7 (30607339-30607174) | |
| 1069-1234, gnl|canFam2|chr2 (38565216-38565388) | |
| 1069-1234, gnl|danRer3|chrNA (215262379-215262551) | |
| 1069-1234, gnl|dasNov1|scaffold_194026 (3515-3343) | |
| 1069-1234, gnl|echTel1|scaffold_283803 (39980-39809) | |
| 1069-1234, gnl|fr1|chrUn (109677924-109677753) | |
| 1069-1234, gnl|galGal2|chr13 (907523-907694) | |
| 1069-1234, gnl|hg17|chr5 (139869782-139869954) | |
| 1069-1234, gnl|Hg17|chr5 (139869786-139869951) | |
| 1069-1234, gnl|loxAfr1|scaffold_39611 (10599-10770) | |
| 1069-1234, gnl|mm7|chr18 (37014778-37014950) | |
| 1069-1234, gnl|Mm7|chr18 (37014782-37014947) | |
| 1069-1234, gnl|monDom2|scaffold_6 (68260417-68260245) | |
| 1069-1234, gnl|oryCun1|scaffold_119344 (4727-4556) | |
| 1069-1234, gnl|panTro1|chr4 (146486016-146486188) | |
| 1069-1234, gnl|rheMac2|chr6 (136928537-136928709) | |
| 1069-1234, gnl|rn3|chr18 (29303413-29303585) | |
| 1069-1234, gnl|tetNig1|chr1 (2387103-2386932) | |
| 1069-1234, gnl|xenTro1|scaffold_307 (1260664-1260492) | |
| 1445-1629, gnl|bosTau2|chr7 (30600907-30600723) | |
| 1445-1629, gnl|Hg17|chr5 (139883833-139884017) | |
| 1445-1629, gnl|Mm7|chr18 (37019162-37019340) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-198, gnl|bosTau2|chr7 (30616836-30616668) | |
| 30-198, gnl|Hg17|chr5 (139856879-139857047) | |
| 30-198, gnl|Mm7|chr18 (37001337-37001505) | |
| 1069-1234, gnl|bosTau2|chr7 (30607339-30607174) | |
| 1069-1234, gnl|canFam2|chr2 (38565216-38565388) | |
| 1069-1234, gnl|danRer3|chrNA (215262379-215262551) | |
| 1069-1234, gnl|dasNov1|scaffold_194026 (3515-3343) | |
| 1069-1234, gnl|echTel1|scaffold_283803 (39980-39809) | |
| 1069-1234, gnl|fr1|chrUn (109677924-109677753) | |
| 1069-1234, gnl|galGal2|chr13 (907523-907694) | |
| 1069-1234, gnl|hg17|chr5 (139869782-139869954) | |
| 1069-1234, gnl|Hg17|chr5 (139869786-139869951) | |
| 1069-1234, gnl|loxAfr1|scaffold_39611 (10599-10770) | |
| 1069-1234, gnl|mm7|chr18 (37014778-37014950) | |
| 1069-1234, gnl|Mm7|chr18 (37014782-37014947) | |
| 1069-1234, gnl|monDom2|scaffold_6 (68260417-68260245) | |
| 1069-1234, gnl|oryCun1|scaffold_119344 (4727-4556) | |
| 1069-1234, gnl|panTro1|chr4 (146486016-146486188) | |
| 1069-1234, gnl|rheMac2|chr6 (136928537-136928709) | |
| 1069-1234, gnl|rn3|chr18 (29303413-29303585) | |
| 1069-1234, gnl|tetNig1|chr1 (2387103-2386932) | |
| 1069-1234, gnl|xenTro1|scaffold_307 (1260664-1260492) | |
| 1445-1629, gnl|bosTau2|chr7 (30600907-30600723) | |
| 1445-1629, gnl|Hg17|chr5 (139883833-139884017) | |
| 1445-1629, gnl|Mm7|chr18 (37019162-37019340) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.177588) |