Ss1.1-Pig4-TMW8021B08.3
|
GCCGCCCCTGCGCCCGCGCGCCCGCCCGATGTATGGGTGATATACTGCAGCGGGTGTCAG
GGTGAGGGACGGCCATATTTGCCGGTGCGGCCCGAGCCGTCAACAACAAAAAGTGCGCGG
GAGCTCGGCGGGCGCACGGACGGGCGCACGGACGCCGGGGCCGCCTCGCCGCCGTCCGGC
CTCGCCGCCGCCGTCGCCCTCGCGGGCCTGGCCCCGCTGCGCCCCGGCGCGCCCCGCCGC
TCGGGGGGATGTCTTACAAACCGAACTTGACCGCGCACATGCCCGCCGCCTCCCTCAACG
CCGCTGGGAGTGTCCACCCGCCCTCCACCAGTATGGCGACATCTTCACAGTACCGCCAGC
TGCTGAGTGACTATGGGCCACCATCTCTAGGCTATACCCAGGGAACCGGTAACAGCCAGG
TGCCCCAGAGCAAATACGCTGAGCTGCTGGCCATCATCGAAGAGCTGGGGAAAGAGATCA
GACCCACCTATGCAGGCAGCAAGAGCGCAATGGAGAGACTAAAACGAGGCATCATCCACG
CTAGAGGCTTGGTGAGGGAGTGCTTGGCTGAAACGGAACGGAACGCCAGGTCCTAGCTGC
TTTGTGAGCCTGGAAGGTTTCCCATCTTCTTCCCAGAGAAGTTACAGTTCATCTCCCTTG
CTCAGATGAAACTTTGTTTTCAACATGGTAACAATCTGGTTTCTCCTTCCTACTGTCCCT
CCCATGGTTCATTAGGCTCTGAACCTATAGTCTCTAAGATTTGAGAAAAGATTTTGCAGT
TGATTAGGATTTACATTTTAAATAGGAACTACCCAGGTGTTTGTTTTTTAAAGCATTGAT
TCAAAAGATGCACGTAAAAGTTACCTATCTTAAAGCAAACTAGTTTGCCCCCAAGATACA
GGTGTCTGGCTCTCCTCTTTTGAAGTTATGTTACCAAGATTGTTCTCTGTTCTTTTTTGT
AAACTGATACAACTTGAACGGTTTTTTTTGTAGTGTGGACTGACAGCACACACTTAACCT
AGTAGCTGGTCCCCTTGTTTGCCATACAGTGTAGATTCTGCTTATTGTAACTTCTTTTTT
GCTTAAACATTTGCATGACTCCTAGGTGCTTTGAAGTCAGTTTTTAAAATGCACAAGTTA
TAAATACAGAAGAAAGAGCAGCCTCCCAAACCAAACCTAACAGGGACCCCCGAAATTATT
CCTAAGACTGTACTGTAGATTTCAGTTCTGCCTTTCCTGGAAGTTGATCCAAACATCTGG
AAGAAAATGAAACTGTTTGCATCTTTGTATTTATTACTTGATGTAATAAAGCTTATTTTC
ATTAACAAAAAAAAAAAAAAAAAAGGTTTCTTGAATTCTTGGTGCTTTTTTTTTTTTTTT
TTTCTTATCTTTTTCTTTTTAGGGCCTCACCCACGGCACATAGAGGTTCAGGAAAGGAGA
TGGAAATCGAAGCCTGTTCCTCCTATCGGAGGCTCCCCAGATTCCCTTCCACTATTAAGG
TTTCTTGTGTACCATTCCAGATACTTCAGTTGGTGGCTGCCTTCTAAAAGGAGGTTGGAA
CTTGGAAGGGCCCTGTACACTGCAACCAGAGGTCTAGAGAGCCTTGCATAGAGCTAAACT
TCCAAACCAGGCCACTGCAAGGTGAGAAGAGCCCTAACTGGCTTCCTACAGGTAATCTAT
TGGGATGCATGCAATCTGGCCGTCACTGAAGAAGTAAAGCAAATTCTATGCCTTGACAGT
GGCCTTCTCTTGCTGTGTTTCCCTACTGGGTTTTTGTTTTTACTTTAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCGCCCCTGCGCCCGCGCGCCCGCCCGATGTATGGGTGATATACTGCAGCGGGTGTCAG
GGTGAGGGACGGCCATATTTGCCGGTGCGGCCCGAGCCGTCAACAACAAAAAGTGCGCGG
GAGCTCGGCGGGCGCACGGACGGGCGCACGGACGCCGGGGCCGCCTCGCCGCCGTCCGGC
CTCGCCGCCGCCGTCGCCCTCGCGGGCCTGGCCCCGCTGCGCCCCGGCGCGCCCCGCCGC
TCGGGGGGATGTCTTACAAACCGAACTTGACCGCGCACATGCCCGCCGCCTCCCTCAACG
CCGCTGGGAGTGTCCACCCGCCCTCCACCAGTATGGCGACATCTTCACAGTACCGCCAGC
TGCTGAGTGACTATGGGCCACCATCTCTAGGCTATACCCAGGGAACCGGTAACAGCCAGG
TGCCCCAGAGCAAATACGCTGAGCTGCTGGCCATCATCGAAGAGCTGGGGAAAGAGATCA
GACCCACCTATGCAGGCAGCAAGAGCGCAATGGAGAGACTAAAACGAGGCATCATCCACG
CTAGAGGCTTGGTGAGGGAGTGCTTGGCTGAAACGGAACGGAACGCCAGGTCCTAGCTGC
TTTGTGAGCCTGGAAGGTTTCCCATCTTCTTCCCAGAGAAGTTACAGTTCATCTCCCTTG
CTCAGATGAAACTTTGTTTTCAACATGGTAACAATCTGGTTTCTCCTTCCTACTGTCCCT
CCCATGGTTCATTAGGCTCTGAACCTATAGTCTCTAAGATTTGAGAAAAGATTTTGCAGT
TGATTAGGATTTACATTTTAAATAGGAACTACCCAGGTGTTTGTTTTTTAAAGCATTGAT
TCAAAAGATGCACGTAAAAGTTACCTATCTTAAAGCAAACTAGTTTGCCCCCAAGATACA
GGTGTCTGGCTCTCCTCTTTTGAAGTTATGTTACCAAGATTGTTCTCTGTTCTTTTTTGT
AAACTGATACAACTTGAACGGTTTTTTTTGTAGTGTGGACTGACAGCACACACTTAACCT
AGTAGCTGGTCCCCTTGTTTGCCATACAGTGTAGATTCTGCTTATTGTAACTTCTTTTTT
GCTTAAACATTTGCATGACTCCTAGGTGCTTTGAAGTCAGTTTTTAAAATGCACAAGTTA
TAAATACAGAAGAAAGAGCAGCCTCCCAAACCAAACCTAACAGGGACCCCCGAAATTATT
CCTAAGACTGTACTGTAGATTTCAGTTCTGCCTTTCCTGGAAGTTGATCCAAACATCTGG
AAGAAAATGAAACTGTTTGCATCTTTGTATTTATTACTTGATGTAATAAAGCTTATTTTC
ATTAACAAAAAAAAAAAAAAAAAAGGTTTCTTGAATTCTTGGTGCTTTTTTTTTTTTTTT
TTTCTTATCTTTTTCTTTTTAGGGCCTCACCCACGGCACATAGAGGTTCAGGAAAGGAGA
TGGAAATCGAAGCCTGTTCCTCCTATCGGAGGCTCCCCAGATTCCCTTCCACTATTAAGG
TTTCTTGTGTACCATTCCAGATACTTCAGTTGGTGGCTGCCTTCTAAAAGGAGGTTGGAA
CTTGGAAGGGCCCTGTACACTGCAACCAGAGGTCTAGAGAGCCTTGCATAGAGCTAAACT
TCCAAACCAGGCCACTGCAAGGTGAGAAGAGCCCTAACTGGCTTCCTACAGGTAATCTAT
TGGGATGCATGCAATCTGGCCGTCACTGAAGAAGTAAAGCAAATTCTATGCCTTGACAGT
GGCCTTCTCTTGCTGTGTTTCCCTACTGGGTTTTTGTTTTTACTTTAT
|
|
gi|13905228|gb|AAH06910.1| |
Protein identifier
|
gi|13905228|gb|AAH06910.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
1-319, gnl|bosTau2|chr17 (26341875-26341551) |
|
1-319, gnl|Hg17|chr12 (122281273-122280983) |
|
1-319, gnl|Mm7|chr5 (123600488-123600164) |
| |
|
527-1370, gnl|bosTau2|chr17 (26332265-26331407) |
|
527-1370, gnl|Hg17|chr12 (122271232-122270387) |
|
527-1370, gnl|Mm7|chr5 (123592019-123591267) |
| |
|
1427-1700, gnl|bosTau2|chr17 (26330566-26330292) |
|
1427-1700, gnl|canFam2|chr26 (9311404-9311154) |
|
1427-1700, gnl|dasNov1|scaffold_2520 (78595-78980) |
|
1427-1700, gnl|hg17|chr12 (122268208-122268456) |
|
1427-1700, gnl|Hg17|chr12 (122268468-122268207) |
|
1427-1700, gnl|oryCun1|scaffold_7856 (1887-1714) |
|
1427-1700, gnl|panTro1|chr10 (125342581-125342829) |
|
1427-1700, gnl|rheMac2|chr11 (124537774-124538022) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-319, gnl|bosTau2|chr17 (26341875-26341551) |
|
1-319, gnl|Hg17|chr12 (122281273-122280983) |
|
1-319, gnl|Mm7|chr5 (123600488-123600164) |
| |
|
527-1370, gnl|bosTau2|chr17 (26332265-26331407) |
|
527-1370, gnl|Hg17|chr12 (122271232-122270387) |
|
527-1370, gnl|Mm7|chr5 (123592019-123591267) |
| |
|
1427-1700, gnl|bosTau2|chr17 (26330566-26330292) |
|
1427-1700, gnl|canFam2|chr26 (9311404-9311154) |
|
1427-1700, gnl|dasNov1|scaffold_2520 (78595-78980) |
|
1427-1700, gnl|hg17|chr12 (122268208-122268456) |
|
1427-1700, gnl|Hg17|chr12 (122268468-122268207) |
|
1427-1700, gnl|oryCun1|scaffold_7856 (1887-1714) |
|
1427-1700, gnl|panTro1|chr10 (125342581-125342829) |
|
1427-1700, gnl|rheMac2|chr11 (124537774-124538022) |
|
spc (1.13366) |
|
pro (1.02407) |
|
clu (0.957167) |
|
hea (0.817996) |
|
sug (0.763747) |
|
isp (0.601504) |
|
aor (0.585823) |
|
lin (0.582411) |
|
ret (0.514933) |
|
tbr (0.462535) |
|
amn (0.417711) |
|
ssp (0.406559) |
|
thg (0.380373) |
|
ese (0.379507) |
|
mgm (0.360685) |
|
rec (0.346141) |
|
ski (0.29347) |
|
lnt (0.284616) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
ecc (0.23007) |
|
col (0.195008) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
spc (1.13366) |
|
pro (1.02407) |
|
clu (0.957167) |
|
hea (0.817996) |
|
sug (0.763747) |
|
isp (0.601504) |
|
aor (0.585823) |
|
lin (0.582411) |
|
ret (0.514933) |
|
tbr (0.462535) |
|
amn (0.417711) |
|
ssp (0.406559) |
|
thg (0.380373) |
|
ese (0.379507) |
|
mgm (0.360685) |
|
rec (0.346141) |
|
ski (0.29347) |
|
lnt (0.284616) |
|
hlv (0.278513) |
|
fce (0.271592) |
|
lyg (0.266205) |
|
ova (0.258264) |
|
cbe (0.239234) |
|
pan (0.23596) |
|
ecc (0.23007) |
|
col (0.195008) |
|
nlu (0.191681) |
|
gul (0.177588) |
|
fbs (0.175346) |
|
sin (0.174948) |
|
bfe (0.149858) |
|
fat (0.147427) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ste (0.135208) |
|
nmm (0.132802) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cly (0.120642) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
jca (0.11396) |
|
cty (0.10408) |
|
nbm (0.0993246) |
