Non-Coding RNA Search

Ss1.1-Pig4-TMW8021C12.3

Sequence:


               
               TTGTTTTAGCATTGCTACCAGCTGCAGTAGCTTTTAAGGGTGTGTCAACATTTCATTATA
AATTATAGCTTCCTGGTTCAGTATCTCAGCTGTTTTAGAACTTTCAGCCAAGCTAAATCT
TTTCTGGTGTCGAAACTTAGTAAGTTGAGTAAGCCTTTTTTTTTTTTTTTTTCCCTGCAG
TAATCCACAATCTGTTCTTTGTGTGGGTTGGCACTTATTTATAATTCTTAAAATATGGAT
AGCTTAAAAGAGCCAAATACAGTAGTTTTGCTTGCTCCTGTTGAGCATGAGTAGCAGTAG
TTTATTTTTGTTAATGCAGTTTCATAGTGTATCCCAGAATTTTAAATCCTGACCATAGGA
AAATGCAGTCATTCAGTGGCAATGATGTACAGTCGTGGTCTAGTATAGTGAGGAAATGAA
GGGTATTTTCATCTTACAAATGTGTGATTCATGGACATAACCAGGCACATAGTAAATATA
TAATAGGTGTTTGACTCGTAAATTATAAATACAAATTATCTTCCCTCCCCAGTTTCCATT
TATCTTCTTGGTATTTCAAGATGGGTTGACTCAGTGATTCTCAACCTAAGCTGCATATTA
GAACACCCAGCAGACCTTTAAAAAATAATGATGCTTGAGTACTGTCCTCTTACCAGCTAA
ATCAGAATCTCTGAGGTGAGACCAGACACGTATTTTTTTTTTAAGTTTTCCAGCCGGTTC
TAAAAGACACCTAGGGTTGAGAACCACCAGTTTTCCCCTTTGTAAGATGCTCTAAGTACA
CTGGATTCTGTTTGAAAGTATCAGAATAATTCAATTTACAGCTACTATTAAATATCTGCC
AATGTAATGGTTTGTTATATTTCTTAAAGAATAAAAGATACTTGGCATTCCTTATTTGGG
AAATAATTACAGTTTACCTTTTTCTTTCTTTTTTTAAATAAAATCTACCAGTAGTTTAAA
TGTAAACTTTTAATGTCTGCCATCTTTCTGCCCTCTTTGCCTTTAAAACTTTCAAAAATA
AATGTTTATTATTTGAGAAAGCATGCTAAAAAATTGCAGATAAGAAATATTGTTTTTGAT
AATTATGCACTGTCTTAATATGGCCACTTTATGCATTAGTATAACACACTCATTATAGTG
GCCTAGTTATTTGGGGTTTGATAATGCAGATATGTTTTTTTAAAAAGTCATTGTCTTCGT
CTTCTAAATTTTTGAAAGTTACTTTGCTCAAGTACTTAGTTTGGCTCAAGTACTTTGTTT
ACAATATAAATAGATATTATAACATTTAATAGAAGAAATGGCTATGGCTTATCTGAAAAG
AATGTCAGCATGACTTGGTGTATACTTAAAAGAATACGTGTTGTGAATATTCTATTATGT
GGAATGATCATTGGAATATCAAGGACTCTAGTAATTGTATTTCCTGAATAAATGTATGTT
TATGAATTTTCTAACTTATATTTTTTTGTTCCTCTGCTAACAATCTGGTTTTATACTTTT
TATTATCCAAAATGTCACTAACAGTGTTTCTTCAAAGGTTGTTGAAGTTCTATAATGACG
AAATAGTGGAAAAAACCAAATTGCTTGCTCATTAATATTCAAGAACTTACAAACTGATTT
GTATTTGGACATAGTTTTTAAAAACATTAGTAAACAATATGCTTCTACTTTAATTCTTAA
GTTTGAGGTAAAGAAATAGAATAGCCAAAATGAATTTAACACTTTTCAGTGGATGGCTTC
ATTTGTCAATTTAGTTCTGATTCTAAGGCTTACTTAAAATAAATCTGTATTAATTATATT
CTTATTCTTTGGATTTGAAAAAATTTGATGTAACTACACAATAGATTTTTCTGAAAGATA
TGTATAACTTTTAAATGAGGTAAAAGCATACTCTGGTGGTTACTGGAATGAAACTTCATA
TATTTTGCTTTGTCTTTCATAAAATATAACTACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTTAGCATTGCTACCAGCTGCAGTAGCTTTTAAGGGTGTGTCAACATTTCATTATA
AATTATAGCTTCCTGGTTCAGTATCTCAGCTGTTTTAGAACTTTCAGCCAAGCTAAATCT
TTTCTGGTGTCGAAACTTAGTAAGTTGAGTAAGCCTTTTTTTTTTTTTTTTTCCCTGCAG
TAATCCACAATCTGTTCTTTGTGTGGGTTGGCACTTATTTATAATTCTTAAAATATGGAT
AGCTTAAAAGAGCCAAATACAGTAGTTTTGCTTGCTCCTGTTGAGCATGAGTAGCAGTAG
TTTATTTTTGTTAATGCAGTTTCATAGTGTATCCCAGAATTTTAAATCCTGACCATAGGA
AAATGCAGTCATTCAGTGGCAATGATGTACAGTCGTGGTCTAGTATAGTGAGGAAATGAA
GGGTATTTTCATCTTACAAATGTGTGATTCATGGACATAACCAGGCACATAGTAAATATA
TAATAGGTGTTTGACTCGTAAATTATAAATACAAATTATCTTCCCTCCCCAGTTTCCATT
TATCTTCTTGGTATTTCAAGATGGGTTGACTCAGTGATTCTCAACCTAAGCTGCATATTA
GAACACCCAGCAGACCTTTAAAAAATAATGATGCTTGAGTACTGTCCTCTTACCAGCTAA
ATCAGAATCTCTGAGGTGAGACCAGACACGTATTTTTTTTTTAAGTTTTCCAGCCGGTTC
TAAAAGACACCTAGGGTTGAGAACCACCAGTTTTCCCCTTTGTAAGATGCTCTAAGTACA
CTGGATTCTGTTTGAAAGTATCAGAATAATTCAATTTACAGCTACTATTAAATATCTGCC
AATGTAATGGTTTGTTATATTTCTTAAAGAATAAAAGATACTTGGCATTCCTTATTTGGG
AAATAATTACAGTTTACCTTTTTCTTTCTTTTTTTAAATAAAATCTACCAGTAGTTTAAA
TGTAAACTTTTAATGTCTGCCATCTTTCTGCCCTCTTTGCCTTTAAAACTTTCAAAAATA
AATGTTTATTATTTGAGAAAGCATGCTAAAAAATTGCAGATAAGAAATATTGTTTTTGAT
AATTATGCACTGTCTTAATATGGCCACTTTATGCATTAGTATAACACACTCATTATAGTG
GCCTAGTTATTTGGGGTTTGATAATGCAGATATGTTTTTTTAAAAAGTCATTGTCTTCGT
CTTCTAAATTTTTGAAAGTTACTTTGCTCAAGTACTTAGTTTGGCTCAAGTACTTTGTTT
ACAATATAAATAGATATTATAACATTTAATAGAAGAAATGGCTATGGCTTATCTGAAAAG
AATGTCAGCATGACTTGGTGTATACTTAAAAGAATACGTGTTGTGAATATTCTATTATGT
GGAATGATCATTGGAATATCAAGGACTCTAGTAATTGTATTTCCTGAATAAATGTATGTT
TATGAATTTTCTAACTTATATTTTTTTGTTCCTCTGCTAACAATCTGGTTTTATACTTTT
TATTATCCAAAATGTCACTAACAGTGTTTCTTCAAAGGTTGTTGAAGTTCTATAATGACG
AAATAGTGGAAAAAACCAAATTGCTTGCTCATTAATATTCAAGAACTTACAAACTGATTT
GTATTTGGACATAGTTTTTAAAAACATTAGTAAACAATATGCTTCTACTTTAATTCTTAA
GTTTGAGGTAAAGAAATAGAATAGCCAAAATGAATTTAACACTTTTCAGTGGATGGCTTC
ATTTGTCAATTTAGTTCTGATTCTAAGGCTTACTTAAAATAAATCTGTATTAATTATATT
CTTATTCTTTGGATTTGAAAAAATTTGATGTAACTACACAATAGATTTTTCTGAAAGATA
TGTATAACTTTTAAATGAGGTAAAAGCATACTCTGGTGGTTACTGGAATGAAACTTCATA
TATTTTGCTTTGTCTTTCATAAAATATAACTACAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q9UI80_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UI80_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1951, gnl|bosTau2|chr15 (36480305-36482235)
               

               
               1-1951, gnl|Hg17|chr11 (27474947-27472549)
               

               
               1-1951, gnl|Mm7|chr2 (109749923-109751767)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1951, gnl|bosTau2|chr15 (36480305-36482235)
               

               
               1-1951, gnl|Hg17|chr11 (27474947-27472549)
               

               
               1-1951, gnl|Mm7|chr2 (109749923-109751767)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               ret (0.7724)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               rec (0.346141)
               

               
               cty (0.31224)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               pro (0.512033)
               

               
               fco (0.471624)
               

               
               rec (0.346141)
               

               
               cty (0.31224)
               

               
               liv (0.292569)
               

               
               kid (0.259471)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               eli (0.151814)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               ecc (0.115035)

	1-1951, gnl\|bosTau2\|chr15 (36480305-36482235)
	1-1951, gnl\|Hg17\|chr11 (27474947-27472549)
	1-1951, gnl\|Mm7\|chr2 (109749923-109751767)

	ret (0.7724)
	pro (0.512033)
	fco (0.471624)
	rec (0.346141)
	cty (0.31224)
	liv (0.292569)
	kid (0.259471)
	nms (0.213858)
	sag (0.182715)
	tbr (0.154178)
	eli (0.151814)
	bfe (0.149858)
	lnt (0.142308)
	thg (0.126791)
	ecc (0.115035)