Non-Coding RNA Search

Ss1.1-Pig4-TMW8021C14.3

Sequence:


               
               TAGAAACAAGTGCAGAAAAGTTGCGTAAGCTCTTAAAAGAGGAGAAAAGGTAAACTATAA
TATTCAGTATTTCTTAACTTAAAGCAAGTACTGAGTTGAACCAGAGTGCCATACGGGAGG
TAAAGTAAGTAAAAAGTAAGTGTTTCAACTCAATCTACAATTCTTGGCAAGTGTGTATAC
CATAAAATTTTCTATAAAAGAGATAAAGCAAAGTGAAATCTAAGGCTAGACTTGTGGGAA
AAAAAATGTAACCTTAGAATTAAAATATCTAGTAAGCTGTTTTAATTATCTTTGTTTGAG
GGAGAAATGTTTTAGAACTAGAGCAGTAATTCTCAACTGGGAGCAGATTGGTCCCCCTGT
GGAATATTTTTGGTTGTCATAACTGATAGAATGTTATTGGCATTTAGTGCGTAGAGGTTA
GGGATGCTGCTAAACTTAATACAGAGATGTAGGATCCCCCACTGCCACTCTATGCTCCCA
ACAAAGAATTATTCAGCAAAAAATATTAATAGTGCTAAGGTGGAAAAACTATGAACCAGA
GGTAACCAAATATAAAACCTTAGTTTTCTCCTTTTATGTGTTCAGATGATCTTGTGCTTT
TAAGGTAATATTGGAAATGTCACTGTGTCTTTCAGAAATGATAGGTTTGCTTACAGTGAC
AACTATCTACACAAGTATTTTTTCCCAAAAGTTATGAATAATGATAAAATTAGACATCAT
AATAACAGAGTATTATAACAATTCCTTATCTAAACTACAACTTTGATAAAATCTTTATAA
AATAGAGAATGAATTAGAACTAACGGCTTTATGGATAATTAAATGTTTTTATAGTCAACA
TATCTAATGAGTTAACTACATTTTTTTAGGCTAAAGAAAAAAAGAAGAAAATCAACTTCT
TCCTCTTCAAGTGTTTCTTCTGCTGATGAATCAGTTTCTTCATCATCCTCTTCCTCTTCG
GGGCACAAAAGGCATAAGAAACATAAGAGGAATCGCTCAGAGTCTTCTCGAAGTTCCAAA
AGGCATTCAGCTAAGGCATCCTCAAATCAGATAGATCAGAGTAAGAAAGATGAGTGCTTC
CCAGTTCCAGCCAATACTTCAGCATCTTTTCTTAACCAAAAACAAGAAGTGGAAAAACTA
CTGGAAAAGCAGGATAGGTTACCATATCAAAAGAAACAGGTAAAAGAAAAAGATAGATGC
CCTTTCTCTTCATCTTCAGTTGAAATTCCGGATGATTTTGGAGGTAGGTCTGAATATCCA
AGAGATTTTTGTAATAGCTATAAAACTCAGGCAGGTAGTAGCAAAACAGAAAAGCCATAT
AAGTCAGAAAGACATTTATCCAGTAGAAGAGATTCCTCAGATTCCTTCTATAGGAATTCA
GAGGAAAAGATTAAAATTTATGGTTATAGAAGATTTGAAAAAGATATAGAAGGAAGAAAA
GAGCAGTATAGAAGGTGGGAGACAGGTTCCGTGAAATATTCCACTTCACCAGCAAGCTCA
GAATACTCTTCAAAATCAGTTGAAAAGTATAAAAAATATACTTATTCTGGATCACGTGAT
TTCAGTAGACATGAGCAACGATATGAATTAAATAAAAATCAAGGAGAATATGAAAGAGAG
GGTAATTATGAGGAGGATGCTAAAACTGAGGTCCCAGAAGAAGAAGGACTAAATAGCAAA
GAGCATTCAGAAAGTGGAGTTAAAAAAAATTTACCTCAAAATTTACTCAATATATTTAAT
CAGATAGCTGCATTTGAGAAAGAAAAAGGAAGTAAGCCAAAAAATTAATATGCCAAAGGG
ATCAGTTCCATTACACTAAAGGCTTTTATTGAAAGAATTAGGTCTTTTAGTTCTAATAGC
CCAGTGCAGAAATCTCTGCTCTTGTGGTTATTTTGTTTGTAGAGATTATAGAAATCAAAT
GCTTTTTATAGCTATTCTCAAAGTATATTTGTTTCAGTTGTAGGTCCCCTTTGCTTGATT
TTTTAGGTATTTCATACGTGTGTTTATGTACAGTATTTCTTACTCTGATGATTTAAACTT
CTTCATCTAAAGATAACTCAAAGTATTGTTCCTTCTTTGTATTACGGTGTATGAGAATTC
CTTGGGTCCACCTTATCCTACTGTTTGAGAGAAAATTAAATTTGTGTATTGAACAGTTGG
TTGTTTTTATCAAAAATTACTTAATTCCCTTTTCTGTTAAAAGCCCTTGGCTTTTGAAAG
AGATATTGCTGAATGTTCCTTAAGTACCATTAAATATTAAATTTTTTGCATAATGTTTAT
TTTAAAATGGTAGACAGATTATCTGTCTTGTCTAATTGACCTCTAAAGTCTGATTTAACT
AAAATGGTTTATGTACCAGCTGTTTGACTAGTATCTTAGGAATAAAGCCATAAAGTTGAT
TTCTCTTTTTTTCCCCTTCTTGCTAGCAGTATAGCCCTAAGAAATTTCTTTAAATATTGG
TAAGACCCTAAGAGACTACATTCCAGGCTATTCAAGAATAGATCAGAGTAGAAAAGACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAAACAAGTGCAGAAAAGTTGCGTAAGCTCTTAAAAGAGGAGAAAAGGTAAACTATAA
TATTCAGTATTTCTTAACTTAAAGCAAGTACTGAGTTGAACCAGAGTGCCATACGGGAGG
TAAAGTAAGTAAAAAGTAAGTGTTTCAACTCAATCTACAATTCTTGGCAAGTGTGTATAC
CATAAAATTTTCTATAAAAGAGATAAAGCAAAGTGAAATCTAAGGCTAGACTTGTGGGAA
AAAAAATGTAACCTTAGAATTAAAATATCTAGTAAGCTGTTTTAATTATCTTTGTTTGAG
GGAGAAATGTTTTAGAACTAGAGCAGTAATTCTCAACTGGGAGCAGATTGGTCCCCCTGT
GGAATATTTTTGGTTGTCATAACTGATAGAATGTTATTGGCATTTAGTGCGTAGAGGTTA
GGGATGCTGCTAAACTTAATACAGAGATGTAGGATCCCCCACTGCCACTCTATGCTCCCA
ACAAAGAATTATTCAGCAAAAAATATTAATAGTGCTAAGGTGGAAAAACTATGAACCAGA
GGTAACCAAATATAAAACCTTAGTTTTCTCCTTTTATGTGTTCAGATGATCTTGTGCTTT
TAAGGTAATATTGGAAATGTCACTGTGTCTTTCAGAAATGATAGGTTTGCTTACAGTGAC
AACTATCTACACAAGTATTTTTTCCCAAAAGTTATGAATAATGATAAAATTAGACATCAT
AATAACAGAGTATTATAACAATTCCTTATCTAAACTACAACTTTGATAAAATCTTTATAA
AATAGAGAATGAATTAGAACTAACGGCTTTATGGATAATTAAATGTTTTTATAGTCAACA
TATCTAATGAGTTAACTACATTTTTTTAGGCTAAAGAAAAAAAGAAGAAAATCAACTTCT
TCCTCTTCAAGTGTTTCTTCTGCTGATGAATCAGTTTCTTCATCATCCTCTTCCTCTTCG
GGGCACAAAAGGCATAAGAAACATAAGAGGAATCGCTCAGAGTCTTCTCGAAGTTCCAAA
AGGCATTCAGCTAAGGCATCCTCAAATCAGATAGATCAGAGTAAGAAAGATGAGTGCTTC
CCAGTTCCAGCCAATACTTCAGCATCTTTTCTTAACCAAAAACAAGAAGTGGAAAAACTA
CTGGAAAAGCAGGATAGGTTACCATATCAAAAGAAACAGGTAAAAGAAAAAGATAGATGC
CCTTTCTCTTCATCTTCAGTTGAAATTCCGGATGATTTTGGAGGTAGGTCTGAATATCCA
AGAGATTTTTGTAATAGCTATAAAACTCAGGCAGGTAGTAGCAAAACAGAAAAGCCATAT
AAGTCAGAAAGACATTTATCCAGTAGAAGAGATTCCTCAGATTCCTTCTATAGGAATTCA
GAGGAAAAGATTAAAATTTATGGTTATAGAAGATTTGAAAAAGATATAGAAGGAAGAAAA
GAGCAGTATAGAAGGTGGGAGACAGGTTCCGTGAAATATTCCACTTCACCAGCAAGCTCA
GAATACTCTTCAAAATCAGTTGAAAAGTATAAAAAATATACTTATTCTGGATCACGTGAT
TTCAGTAGACATGAGCAACGATATGAATTAAATAAAAATCAAGGAGAATATGAAAGAGAG
GGTAATTATGAGGAGGATGCTAAAACTGAGGTCCCAGAAGAAGAAGGACTAAATAGCAAA
GAGCATTCAGAAAGTGGAGTTAAAAAAAATTTACCTCAAAATTTACTCAATATATTTAAT
CAGATAGCTGCATTTGAGAAAGAAAAAGGAAGTAAGCCAAAAAATTAATATGCCAAAGGG
ATCAGTTCCATTACACTAAAGGCTTTTATTGAAAGAATTAGGTCTTTTAGTTCTAATAGC
CCAGTGCAGAAATCTCTGCTCTTGTGGTTATTTTGTTTGTAGAGATTATAGAAATCAAAT
GCTTTTTATAGCTATTCTCAAAGTATATTTGTTTCAGTTGTAGGTCCCCTTTGCTTGATT
TTTTAGGTATTTCATACGTGTGTTTATGTACAGTATTTCTTACTCTGATGATTTAAACTT
CTTCATCTAAAGATAACTCAAAGTATTGTTCCTTCTTTGTATTACGGTGTATGAGAATTC
CTTGGGTCCACCTTATCCTACTGTTTGAGAGAAAATTAAATTTGTGTATTGAACAGTTGG
TTGTTTTTATCAAAAATTACTTAATTCCCTTTTCTGTTAAAAGCCCTTGGCTTTTGAAAG
AGATATTGCTGAATGTTCCTTAAGTACCATTAAATATTAAATTTTTTGCATAATGTTTAT
TTTAAAATGGTAGACAGATTATCTGTCTTGTCTAATTGACCTCTAAAGTCTGATTTAACT
AAAATGGTTTATGTACCAGCTGTTTGACTAGTATCTTAGGAATAAAGCCATAAAGTTGAT
TTCTCTTTTTTTCCCCTTCTTGCTAGCAGTATAGCCCTAAGAAATTTCTTTAAATATTGG
TAAGACCCTAAGAGACTACATTCCAGGCTATTCAAGAATAGATCAGAGTAGAAAAGACTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8CAH2_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8CAH2_MOUSE

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               338-434, + strand, RNAz p=0.639725
               

               
               903-1019, - strand, RNAz p=0.606891
               

               
               1300-1459, - strand, RNAz p=0.860447

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               338-434, + strand, RNAz p=0.639725
               

               
               903-1019, - strand, RNAz p=0.606891
               

               
               1300-1459, - strand, RNAz p=0.860447

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-2399, gnl|bosTau2|chr1 (52577312-52574946)
               

               
               1-2399, gnl|Hg17|chr3 (181809252-181811670)
               

               
               1-2399, gnl|Mm7|chr3 (33616666-33618914)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-2399, gnl|bosTau2|chr1 (52577312-52574946)
               

               
               1-2399, gnl|Hg17|chr3 (181809252-181811670)
               

               
               1-2399, gnl|Mm7|chr3 (33616666-33618914)

Expressed library(ies): 19 entry(ies)

More info

Expressed library(ies): 19 entry(ies)

Help | Less info


               
               liv (0.877706)
               

               
               lin (0.582411)
               

               
               cty (0.41632)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.877706)
               

               
               lin (0.582411)
               

               
               cty (0.41632)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               spl (0.286369)
               

               
               lnt (0.284616)
               

               
               ldo (0.194005)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               bla (0.124347)

	338-434, + strand, RNAz p=0.639725
	903-1019, - strand, RNAz p=0.606891
	1300-1459, - strand, RNAz p=0.860447

	1-2399, gnl\|bosTau2\|chr1 (52577312-52574946)
	1-2399, gnl\|Hg17\|chr3 (181809252-181811670)
	1-2399, gnl\|Mm7\|chr3 (33616666-33618914)

	liv (0.877706)
	lin (0.582411)
	cty (0.41632)
	kid (0.389206)
	tra (0.369276)
	spl (0.286369)
	lnt (0.284616)
	ldo (0.194005)
	sag (0.182715)
	fty (0.17584)
	fbs (0.175346)
	sin (0.174948)
	mga (0.160205)
	lun (0.150489)
	ssp (0.13552)
	ste (0.135208)
	ute (0.132784)
	thg (0.126791)
	bla (0.124347)