Ss1.1-Pig4-TMW8021D02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGGGGGGCTGGCGCATGCGTGTCTCCCTGGCCAGGGCGCTGTTCATGGAGCCCACGCTG CTGATGTTGGATGAGCCCACCAACCACCTGGACCTGAACGCTGTCATCTGGCTCAATAAC TACCTCCAGGGCTGGCGGAAGACGCTGCTCATCGTCTCCCACGACCAGGGCTTCCTGGAT GATGTCTGTACAGATATCATCCATCTTGATGCCCAGCGGCTCCATTACTACAGGGGCAAT TACATGACCTTCAAGAAGATGTACCAGCAGAAGCAGAAGGAGCTCCTGAAGCAGTATGAG AAGCAAGAGAAAAAGCTGAAGGAGCTGAAGGCGGGCGGCAAGTCCACCAAGCAGGCGGAA AAGCAAACCAAGGAAGCCCTGACTCGAAAGCAGCAGAAGTGCCGGCGGAAAAACCAGGAT GAGGAGTCACAGGAGGCCCCCGAGCTCCTGAAGCGCCCCAAGGAATACACCGTGCGCTTC ACGTTCCCCGACCCGCCGCCACTCAGCCCTCCTGTGCTGGGCCTGCATGGTGTGACATTT GGCTACGAGGGTCAGAAACCACTCTTTAAGAATCTGGACTTCGGCATCGACATGGACTCC AGGATCTGCATCGTGGGCCCTAACGGCGTCGGGAAGAGCACCCTGCTGCTGCTGCTGACT GGCAAGCTGACCCCGACTCGAGGCGAAATGAGGAAGAACCACCGGCTGAAAATTGGCTTC TTCAACCAGCAGTACGCAGAGCAGCTGCGCATGGAGGAGACGCCCACTGAGTACCTGCAG CGCGGCTTCAACCTGCCCTACCAGGATGCCCGCAAGTGCCTGGGCCGCTTCGGCCTTGAG AGCCACGCCCACACCATCCAGATCTGCAAACTCTCAGGTGGGCAGAAAGCCCGAGTTGTG TTTGCAGAGCTGGCCTGTCGGGAGCCTGATGTCCTCATCTTGGACGAGCCCACCAACAAC CTGGACATTGAGTCTATCGACGCCCTGGGGGAGGCCATCAACGAGTACAAGGGAGCTGTG ATCGTCGTCAGCCACGATGCCCGACTCATCACGGAAACCAACTGCCAGCTGTGGGTGGTG GAGGAGCAGAGCGTCAGCCAGATCGACGGTGACTTCGACGACTACAAGCGGGAGGTGTTG GAGGCCCTGGGTGAAGTCATGGTCAGCCGGCCCCGCGAGTGAGCTTTCCCTCCTGGAAGC CCCCTCGTCCCCCTCTCCTCGGAGGCCCCTCTGGTCTGCAGCGGGGCCAGCAGCTCTCGG CACGTGAAGGCGGAACGTGGTCCTGATGTGACCAGGATGCCGCTTTGATCGCTGCCTTTT CTCTGAAAGACTTGGCTGTTCTGCTTCTCTTCAGATAACCATGCTGGCCTTGTCCTTGAA GTCCCTCTGTACGAACAGGTCACATTCATTATTGAGGGATTCCATCCAGCCAAGGGCACG TGGCCAGTGGTCCGAGGCCGTCCTCTCTCAGAAGCTGGGCCGCCTCAACGCTTCCGGCCC AGCTGCCGCCCTGGTCTGTGAGTGCTGCTGCTCTTTTCTGGTGGATTTAATGCTGACCTA ACGGATTCAAGCAGCTGTGGCCACTCAGAGCTGGAGGGGAGTTCTGAAACCCATGCTGAG AGCCAGGACTTGGTGCCTATAATCTCTAGGCTGCTTGGGGACTTGGGGGCAGGAAAGGAA TGCTGCTGAACTCAAATCACCCTTTACAAGGGGAAGAAATAAAGGAAAGGCGTTGCGGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGGGGGGCTGGCGCATGCGTGTCTCCCTGGCCAGGGCGCTGTTCATGGAGCCCACGCTG CTGATGTTGGATGAGCCCACCAACCACCTGGACCTGAACGCTGTCATCTGGCTCAATAAC TACCTCCAGGGCTGGCGGAAGACGCTGCTCATCGTCTCCCACGACCAGGGCTTCCTGGAT GATGTCTGTACAGATATCATCCATCTTGATGCCCAGCGGCTCCATTACTACAGGGGCAAT TACATGACCTTCAAGAAGATGTACCAGCAGAAGCAGAAGGAGCTCCTGAAGCAGTATGAG AAGCAAGAGAAAAAGCTGAAGGAGCTGAAGGCGGGCGGCAAGTCCACCAAGCAGGCGGAA AAGCAAACCAAGGAAGCCCTGACTCGAAAGCAGCAGAAGTGCCGGCGGAAAAACCAGGAT GAGGAGTCACAGGAGGCCCCCGAGCTCCTGAAGCGCCCCAAGGAATACACCGTGCGCTTC ACGTTCCCCGACCCGCCGCCACTCAGCCCTCCTGTGCTGGGCCTGCATGGTGTGACATTT GGCTACGAGGGTCAGAAACCACTCTTTAAGAATCTGGACTTCGGCATCGACATGGACTCC AGGATCTGCATCGTGGGCCCTAACGGCGTCGGGAAGAGCACCCTGCTGCTGCTGCTGACT GGCAAGCTGACCCCGACTCGAGGCGAAATGAGGAAGAACCACCGGCTGAAAATTGGCTTC TTCAACCAGCAGTACGCAGAGCAGCTGCGCATGGAGGAGACGCCCACTGAGTACCTGCAG CGCGGCTTCAACCTGCCCTACCAGGATGCCCGCAAGTGCCTGGGCCGCTTCGGCCTTGAG AGCCACGCCCACACCATCCAGATCTGCAAACTCTCAGGTGGGCAGAAAGCCCGAGTTGTG TTTGCAGAGCTGGCCTGTCGGGAGCCTGATGTCCTCATCTTGGACGAGCCCACCAACAAC CTGGACATTGAGTCTATCGACGCCCTGGGGGAGGCCATCAACGAGTACAAGGGAGCTGTG ATCGTCGTCAGCCACGATGCCCGACTCATCACGGAAACCAACTGCCAGCTGTGGGTGGTG GAGGAGCAGAGCGTCAGCCAGATCGACGGTGACTTCGACGACTACAAGCGGGAGGTGTTG GAGGCCCTGGGTGAAGTCATGGTCAGCCGGCCCCGCGAGTGAGCTTTCCCTCCTGGAAGC CCCCTCGTCCCCCTCTCCTCGGAGGCCCCTCTGGTCTGCAGCGGGGCCAGCAGCTCTCGG CACGTGAAGGCGGAACGTGGTCCTGATGTGACCAGGATGCCGCTTTGATCGCTGCCTTTT CTCTGAAAGACTTGGCTGTTCTGCTTCTCTTCAGATAACCATGCTGGCCTTGTCCTTGAA GTCCCTCTGTACGAACAGGTCACATTCATTATTGAGGGATTCCATCCAGCCAAGGGCACG TGGCCAGTGGTCCGAGGCCGTCCTCTCTCAGAAGCTGGGCCGCCTCAACGCTTCCGGCCC AGCTGCCGCCCTGGTCTGTGAGTGCTGCTGCTCTTTTCTGGTGGATTTAATGCTGACCTA ACGGATTCAAGCAGCTGTGGCCACTCAGAGCTGGAGGGGAGTTCTGAAACCCATGCTGAG AGCCAGGACTTGGTGCCTATAATCTCTAGGCTGCTTGGGGACTTGGGGGCAGGAAAGGAA TGCTGCTGAACTCAAATCACCCTTTACAAGGGGAAGAAATAAAGGAAAGGCGTTGCGGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 120-244, + strand, RNAz p=0.930669 | |
| 120-244, - strand, RNAz p=0.930669 | |
| 120-244, + strand, RNAz p=0.997004 | |
| 120-244, - strand, RNAz p=0.997004 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-244, + strand, RNAz p=0.930669 | |
| 120-244, - strand, RNAz p=0.930669 | |
| 120-244, + strand, RNAz p=0.997004 | |
| 120-244, - strand, RNAz p=0.997004 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 120-244, gnl|bosTau2|chr23 (20900726-20900602) | |
| 120-244, gnl|canFam2|chr12 (3409049-3409153) | |
| 120-244, gnl|danRer3|chr19 (46619613-46619710) | |
| 120-244, gnl|dasNov1|scaffold_27471 (37787-37881) | |
| 120-244, gnl|echTel1|scaffold_315780 (12902-13014) | |
| 120-244, gnl|fr1|chrUn (71104696-71104597) | |
| 120-244, gnl|hg17|chr6 (30661305-30661409) | |
| 120-244, gnl|Hg17|chr6 (30661314-30661438) | |
| 120-244, gnl|loxAfr1|scaffold_82320 (950-1054) | |
| 120-244, gnl|mm7|chr17 (34064045-34063941) | |
| 120-244, gnl|Mm7|chr17 (34064034-34063910) | |
| 120-244, gnl|monDom2|scaffold_42 (18727983-18727889) | |
| 120-244, gnl|oryCun1|scaffold_204107 (40277-40381) | |
| 120-244, gnl|panTro1|chr5 (31118528-31118632) | |
| 120-244, gnl|rheMac2|chr4 (30167222-30167326) | |
| 120-244, gnl|rn3|chr20 (2959304-2959408) | |
| 120-244, gnl|tetNig1|chr6 (4864720-4864819) | |
| 120-244, gnl|xenTro1|scaffold_547 (717763-717857) | |
| 357-532, gnl|bosTau2|chr23 (20900182-20900006) | |
| 357-532, gnl|canFam2|chr12 (3409629-3409819) | |
| 357-532, gnl|danRer3|chr19 (46620022-46620217) | |
| 357-532, gnl|echTel1|scaffold_315780 (13563-13750) | |
| 357-532, gnl|fr1|chrUn (71104011-71103821) | |
| 357-532, gnl|hg17|chr6 (30661880-30662070) | |
| 357-532, gnl|Hg17|chr6 (30661889-30662064) | |
| 357-532, gnl|loxAfr1|scaffold_82320 (1709-1899) | |
| 357-532, gnl|mm7|chr17 (34063651-34063471) | |
| 357-532, gnl|Mm7|chr17 (34063650-34063475) | |
| 357-532, gnl|monDom2|scaffold_42 (18727346-18727156) | |
| 357-532, gnl|oryCun1|scaffold_204107 (40753-40943) | |
| 357-532, gnl|panTro1|chr5 (31119104-31119294) | |
| 357-532, gnl|rheMac2|chr4 (30167797-30167987) | |
| 357-532, gnl|rn3|chr20 (2959683-2959863) | |
| 357-532, gnl|xenTro1|scaffold_547 (719740-719939) | |
| 704-879, gnl|bosTau2|chr23 (20898246-20898071) | |
| 704-879, gnl|Hg17|chr6 (30665557-30665732) | |
| 704-879, gnl|Mm7|chr17 (34062288-34062113) | |
| 1014-1586, gnl|bosTau2|chr23 (20897505-20896928) | |
| 1014-1586, gnl|Hg17|chr6 (30666289-30666907) | |
| 1616-1740, gnl|bosTau2|chr23 (20896927-20896803) | |
| 1616-1740, gnl|canFam2|chr12 (3412754-3412962) | |
| 1616-1740, gnl|dasNov1|scaffold_81103 (6097-6288) | |
| 1616-1740, gnl|hg17|chr6 (30666887-30667095) | |
| 1616-1740, gnl|Hg17|chr6 (30666935-30667066) | |
| 1616-1740, gnl|loxAfr1|scaffold_82320 (5111-5308) | |
| 1616-1740, gnl|mm7|chr17 (34061035-34060835) | |
| 1616-1740, gnl|Mm7|chr17 (34060979-34060862) | |
| 1616-1740, gnl|monDom2|scaffold_42 (18722461-18722228) | |
| 1616-1740, gnl|oryCun1|scaffold_174217 (13061-13270) | |
| 1616-1740, gnl|panTro1|chr5 (31124142-31124348) | |
| 1616-1740, gnl|rheMac2|chr4 (30172000-30172208) | |
| 1616-1740, gnl|rn3|chr20 (2962193-2962383) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 120-244, gnl|bosTau2|chr23 (20900726-20900602) | |
| 120-244, gnl|canFam2|chr12 (3409049-3409153) | |
| 120-244, gnl|danRer3|chr19 (46619613-46619710) | |
| 120-244, gnl|dasNov1|scaffold_27471 (37787-37881) | |
| 120-244, gnl|echTel1|scaffold_315780 (12902-13014) | |
| 120-244, gnl|fr1|chrUn (71104696-71104597) | |
| 120-244, gnl|hg17|chr6 (30661305-30661409) | |
| 120-244, gnl|Hg17|chr6 (30661314-30661438) | |
| 120-244, gnl|loxAfr1|scaffold_82320 (950-1054) | |
| 120-244, gnl|mm7|chr17 (34064045-34063941) | |
| 120-244, gnl|Mm7|chr17 (34064034-34063910) | |
| 120-244, gnl|monDom2|scaffold_42 (18727983-18727889) | |
| 120-244, gnl|oryCun1|scaffold_204107 (40277-40381) | |
| 120-244, gnl|panTro1|chr5 (31118528-31118632) | |
| 120-244, gnl|rheMac2|chr4 (30167222-30167326) | |
| 120-244, gnl|rn3|chr20 (2959304-2959408) | |
| 120-244, gnl|tetNig1|chr6 (4864720-4864819) | |
| 120-244, gnl|xenTro1|scaffold_547 (717763-717857) | |
| 357-532, gnl|bosTau2|chr23 (20900182-20900006) | |
| 357-532, gnl|canFam2|chr12 (3409629-3409819) | |
| 357-532, gnl|danRer3|chr19 (46620022-46620217) | |
| 357-532, gnl|echTel1|scaffold_315780 (13563-13750) | |
| 357-532, gnl|fr1|chrUn (71104011-71103821) | |
| 357-532, gnl|hg17|chr6 (30661880-30662070) | |
| 357-532, gnl|Hg17|chr6 (30661889-30662064) | |
| 357-532, gnl|loxAfr1|scaffold_82320 (1709-1899) | |
| 357-532, gnl|mm7|chr17 (34063651-34063471) | |
| 357-532, gnl|Mm7|chr17 (34063650-34063475) | |
| 357-532, gnl|monDom2|scaffold_42 (18727346-18727156) | |
| 357-532, gnl|oryCun1|scaffold_204107 (40753-40943) | |
| 357-532, gnl|panTro1|chr5 (31119104-31119294) | |
| 357-532, gnl|rheMac2|chr4 (30167797-30167987) | |
| 357-532, gnl|rn3|chr20 (2959683-2959863) | |
| 357-532, gnl|xenTro1|scaffold_547 (719740-719939) | |
| 704-879, gnl|bosTau2|chr23 (20898246-20898071) | |
| 704-879, gnl|Hg17|chr6 (30665557-30665732) | |
| 704-879, gnl|Mm7|chr17 (34062288-34062113) | |
| 1014-1586, gnl|bosTau2|chr23 (20897505-20896928) | |
| 1014-1586, gnl|Hg17|chr6 (30666289-30666907) | |
| 1616-1740, gnl|bosTau2|chr23 (20896927-20896803) | |
| 1616-1740, gnl|canFam2|chr12 (3412754-3412962) | |
| 1616-1740, gnl|dasNov1|scaffold_81103 (6097-6288) | |
| 1616-1740, gnl|hg17|chr6 (30666887-30667095) | |
| 1616-1740, gnl|Hg17|chr6 (30666935-30667066) | |
| 1616-1740, gnl|loxAfr1|scaffold_82320 (5111-5308) | |
| 1616-1740, gnl|mm7|chr17 (34061035-34060835) | |
| 1616-1740, gnl|Mm7|chr17 (34060979-34060862) | |
| 1616-1740, gnl|monDom2|scaffold_42 (18722461-18722228) | |
| 1616-1740, gnl|oryCun1|scaffold_174217 (13061-13270) | |
| 1616-1740, gnl|panTro1|chr5 (31124142-31124348) | |
| 1616-1740, gnl|rheMac2|chr4 (30172000-30172208) | |
| 1616-1740, gnl|rn3|chr20 (2962193-2962383) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| sag (0.182715) | |
| ton (0.1755) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| sag (0.182715) | |
| ton (0.1755) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| eep (0.122564) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ecc (0.115035) |