Non-Coding RNA Search

Ss1.1-Pig4-TMW8021D05.3

Sequence:


               
               GTCAGCTGGGGCAAGAAGGTCCAGCCTATAGACTCCATATTAGCAGACTGGAATGAAGAT
ATAGAAGCATTTGAAATGATGGAGAAGGATGAGCTCTGACTCCCTAAAGTCTACCTGGTG
GTAGGTATTTCCAAAGAAAAGGTAAACTGTGGTTCATAGACACCCTGGTCCTAAGCAGGC
TCTCTCATGGGAGGCTTTAAGTATGGTGATGAGCAACCACGTTCTGACTGGGAGAGGGAG
TTATCATAGGAATCTGGAGCGTGTTAGGCTAGAACTGACCTTGTTTAAACTGTCCCATCA
CAAATGGAAACTCACAGCCCCCCCTCAGGTGACAGCATGCACCACCCTGCTGTACCTCAG
GCCAGGAGGAGATTGCTGGAGTCTCTGGAGAGACAGGATTCAGTTAACTGTGAGGTGGGG
AATATGAATTTGAGTCTCTTTCTAATGAAAGGAAGCTCGGCTTTCTTGCTTTGGGGGTTA
GAGGCTCTTTGGGGAAAACACAGATGAGTATTGCGGGCATTCCGATGATGCTGCCTTCAC
AAAAACACTCAAAGTGACCTATGTGGTGATGAAGCAACTGCATTCACGGTGAAAACGGTC
TTTGCTTATCATTTTCACTTGCTTCATTGTGTAACACGATCAAAATGACTTGATTTCTTT
TCCCTTTTAACAATGTCCTTTTCATTTAAACCAAAGGTGAAGCCAGTATACTTTTCTCAG
TGAGTTACTAATCCTTGGGACCAGGTAAAAAGGTCATATACTGTGTTGTGGAATTTGAGG
ACTTAATATTTTTGAAAAATGGAGCAAGGGTGAAACATAATGTTGCAATATGCACTTGCC
ATTGGGCCTTCCAAAGGGAAAGCTGTGACTACTCTGAAGCGGAACTTAGGGTTATATCTT
AGTAGGGTGAATTATAAATCTTTTCCAGTTCATTTCTTTGGAGGTGATTACCTCTTGCCA
TCAGCCTTACTCCATCCCATGTTTAGTACGCATTTTGAGCCACAAGGCCTGTGTTGCCAA
TATCTGAATACATTTTGTTCCATTTTTCTATCTTCGGGAGCCATGATAAAACTGTGGTAG
TGATTTAAAAATTCTGGGGTAACTACTATTTTCCTCCTTTGAAACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGCTGGGGCAAGAAGGTCCAGCCTATAGACTCCATATTAGCAGACTGGAATGAAGAT
ATAGAAGCATTTGAAATGATGGAGAAGGATGAGCTCTGACTCCCTAAAGTCTACCTGGTG
GTAGGTATTTCCAAAGAAAAGGTAAACTGTGGTTCATAGACACCCTGGTCCTAAGCAGGC
TCTCTCATGGGAGGCTTTAAGTATGGTGATGAGCAACCACGTTCTGACTGGGAGAGGGAG
TTATCATAGGAATCTGGAGCGTGTTAGGCTAGAACTGACCTTGTTTAAACTGTCCCATCA
CAAATGGAAACTCACAGCCCCCCCTCAGGTGACAGCATGCACCACCCTGCTGTACCTCAG
GCCAGGAGGAGATTGCTGGAGTCTCTGGAGAGACAGGATTCAGTTAACTGTGAGGTGGGG
AATATGAATTTGAGTCTCTTTCTAATGAAAGGAAGCTCGGCTTTCTTGCTTTGGGGGTTA
GAGGCTCTTTGGGGAAAACACAGATGAGTATTGCGGGCATTCCGATGATGCTGCCTTCAC
AAAAACACTCAAAGTGACCTATGTGGTGATGAAGCAACTGCATTCACGGTGAAAACGGTC
TTTGCTTATCATTTTCACTTGCTTCATTGTGTAACACGATCAAAATGACTTGATTTCTTT
TCCCTTTTAACAATGTCCTTTTCATTTAAACCAAAGGTGAAGCCAGTATACTTTTCTCAG
TGAGTTACTAATCCTTGGGACCAGGTAAAAAGGTCATATACTGTGTTGTGGAATTTGAGG
ACTTAATATTTTTGAAAAATGGAGCAAGGGTGAAACATAATGTTGCAATATGCACTTGCC
ATTGGGCCTTCCAAAGGGAAAGCTGTGACTACTCTGAAGCGGAACTTAGGGTTATATCTT
AGTAGGGTGAATTATAAATCTTTTCCAGTTCATTTCTTTGGAGGTGATTACCTCTTGCCA
TCAGCCTTACTCCATCCCATGTTTAGTACGCATTTTGAGCCACAAGGCCTGTGTTGCCAA
TATCTGAATACATTTTGTTCCATTTTTCTATCTTCGGGAGCCATGATAAAACTGTGGTAG
TGATTTAAAAATTCTGGGGTAACTACTATTTTCCTCCTTTGAAACTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               930-1048, - strand, RNAz p=0.86352

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               930-1048, - strand, RNAz p=0.86352

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-379, gnl|bosTau2|chr16 (48018815-48018425)
               

               
               1-379, gnl|canFam2|chr7 (20884780-20885083)
               

               
               1-379, gnl|dasNov1|scaffold_104689 (4350-4626)
               

               
               1-379, gnl|echTel1|scaffold_319668 (5310-5021)
               

               
               1-379, gnl|galGal2|chr8 (7908514-7908779)
               

               
               1-379, gnl|hg17|chr1 (181394556-181394848)
               

               
               1-379, gnl|Hg17|chr1 (181394952-181394574)
               

               
               1-379, gnl|loxAfr1|scaffold_3884 (66675-66963)
               

               
               1-379, gnl|mm7|chr1 (151752853-151752598)
               

               
               1-379, gnl|Mm7|chr1 (151752492-151752843)
               

               
               1-379, gnl|monDom2|scaffold_16 (38902830-38903137)
               

               
               1-379, gnl|panTro1|chr1 (163962380-163962672)
               

               
               1-379, gnl|rheMac2|chr1 (185985293-185985001)
               

               
               1-379, gnl|rn3|chr13 (66726786-66726520)
               


               
               389-1128, gnl|bosTau2|chr16 (48018380-48017636)
               

               
               389-1128, gnl|Hg17|chr1 (181394532-181393778)
               

               
               389-1128, gnl|Mm7|chr1 (151752861-151753551)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-379, gnl|bosTau2|chr16 (48018815-48018425)
               

               
               1-379, gnl|canFam2|chr7 (20884780-20885083)
               

               
               1-379, gnl|dasNov1|scaffold_104689 (4350-4626)
               

               
               1-379, gnl|echTel1|scaffold_319668 (5310-5021)
               

               
               1-379, gnl|galGal2|chr8 (7908514-7908779)
               

               
               1-379, gnl|hg17|chr1 (181394556-181394848)
               

               
               1-379, gnl|Hg17|chr1 (181394952-181394574)
               

               
               1-379, gnl|loxAfr1|scaffold_3884 (66675-66963)
               

               
               1-379, gnl|mm7|chr1 (151752853-151752598)
               

               
               1-379, gnl|Mm7|chr1 (151752492-151752843)
               

               
               1-379, gnl|monDom2|scaffold_16 (38902830-38903137)
               

               
               1-379, gnl|panTro1|chr1 (163962380-163962672)
               

               
               1-379, gnl|rheMac2|chr1 (185985293-185985001)
               

               
               1-379, gnl|rn3|chr13 (66726786-66726520)
               


               
               389-1128, gnl|bosTau2|chr16 (48018380-48017636)
               

               
               389-1128, gnl|Hg17|chr1 (181394532-181393778)
               

               
               389-1128, gnl|Mm7|chr1 (151752861-151753551)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cbl (0.114797)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.114797)

	1-379, gnl\|bosTau2\|chr16 (48018815-48018425)
	1-379, gnl\|canFam2\|chr7 (20884780-20885083)
	1-379, gnl\|dasNov1\|scaffold_104689 (4350-4626)
	1-379, gnl\|echTel1\|scaffold_319668 (5310-5021)
	1-379, gnl\|galGal2\|chr8 (7908514-7908779)
	1-379, gnl\|hg17\|chr1 (181394556-181394848)
	1-379, gnl\|Hg17\|chr1 (181394952-181394574)
	1-379, gnl\|loxAfr1\|scaffold_3884 (66675-66963)
	1-379, gnl\|mm7\|chr1 (151752853-151752598)
	1-379, gnl\|Mm7\|chr1 (151752492-151752843)
	1-379, gnl\|monDom2\|scaffold_16 (38902830-38903137)
	1-379, gnl\|panTro1\|chr1 (163962380-163962672)
	1-379, gnl\|rheMac2\|chr1 (185985293-185985001)
	1-379, gnl\|rn3\|chr13 (66726786-66726520)

	389-1128, gnl\|bosTau2\|chr16 (48018380-48017636)
	389-1128, gnl\|Hg17\|chr1 (181394532-181393778)
	389-1128, gnl\|Mm7\|chr1 (151752861-151753551)