Ss1.1-Pig4-TMW8021E04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGCTGATCCTGTCCAAGGTGTGGGTCTCCCAGCAGCCGGAGGACAGCCAGCAGGACCT GCCTGGGGAGCGCCACGCCCTCCTGGAGGAGGAGAACCGCGTGTGGCACCTGGTGCGGCC GGCGGACGAGGTGGACGAGGGCAAGTCCAAGCGCGGCAGCGTGAAGGAGAAGGAGCGGAC CAAGGCCATCACTGAGATCTACCTGACCCGCCTGCTCTCGGTCAAGGGCACGCTGCAGCA GTTCGTGGACAACTTCTTCCAGAGCGTGCTGGCGCCCGGGCTCGCGGTGCCCCCCGCCGT CAAGTACTTCTTCGACTTTCTGGACGAGCAGGCGGAAAAGCATGACATCAAGGACGAGGA CACCATCCACATCTGGAAGACCAACAGTTTGCCGCTGCGGTTCTGGGTGAACATCCTCAA GAATCCCCACTTCATCTTCGACGTGCACGTCCACGAGGTGGTGGACGCCTCCCTCTCGGT CATCGCGCAAACCTTCATGGACGCCTGTACGCGCACGGAGCACAAGCTGAGCCGCGACTC TCCCAGCAACAAGCTTCTCTACGCCAAGGAGATCTCCACCTACAAGAAGATGGTGGAGGA CTACTACAAGGGGATCAGACAGATGGTGCAGGTCAGCGACCAGGACATGAACACCCACCT GGCAGAGATCTCCCGGGCACACACGGACTCCCTGAACACGCTCGTGGCGCTGCACCAGCT CTACCAGTACACGCAGAAGTACTATGACGAGATCATCAACGCCCTGGAGGAGGATCCTGC CGCCCAGAAGATGCAGCTGGCCTTCCGGCTCCAGCAGATTGCCGCTGCACTCGAGAACAA GGTCACGGACCTCTGACCTCCAACTCCTCTGTTCCGGTCTCAGGGCGCAGGTGCGTGATG CCCGGGGCCGGGCTCGGGCACCCTTGGGGAATGTGGCTGAGTCGGCAGGGTTGACGAGCC CCCGGGCTTCCAAGCGCACGCGGCGTGGCGGGCAGCCCCCACCTCCATGTTGGAAGCTAC ATGGCCCCTTTCTCCTGAGCAATAGTGCGGGGCGCCCAGCAGCACCAGCTCCCTCCTGCA GAACCAGCATCGCCTGGGGTCTCCTTCACGTCTCCCGAGTGATTTGAAAACGTGCCTTAT ACTCCCGGCGCCACGCTGGGTCTCTGGGGGCGGTCGGGCCTCAGCCCCCTCCCCGAGCAC CAGCAGCCACCTCGGATACCTGGGTTTGGCCCTTTTGGGTGGGATCTGAGTGCCTGCAGC CCCCGGGACCTAGCGCCCAGACTGCCTTGCCGGGCTGGGGGTAGAAAACCGGTACAATGC CTTGCTGACCTCGACGGCTTGCCCTGCGGCGCGGGCACTCCGGTGGACTCGGCGCTGGAG ACCCCACCTCAAGCTGGACGTCACACGTCAAGGCCCAGGCGGCCAGAAGGGACCCAGCAG ACTGGGGGTCCTGGTCTCCGCCTGTCAGACAGGCCGACCTGGAGGCCCTGCCTGGGTCTG GGGAGCCAGGAGCAGCTCCGCCAGGACCGCCCCCGACCCTTTTTGTAAATCTTGTTCATT GTAAATCAAATACAATTGTGTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGCTGATCCTGTCCAAGGTGTGGGTCTCCCAGCAGCCGGAGGACAGCCAGCAGGACCT GCCTGGGGAGCGCCACGCCCTCCTGGAGGAGGAGAACCGCGTGTGGCACCTGGTGCGGCC GGCGGACGAGGTGGACGAGGGCAAGTCCAAGCGCGGCAGCGTGAAGGAGAAGGAGCGGAC CAAGGCCATCACTGAGATCTACCTGACCCGCCTGCTCTCGGTCAAGGGCACGCTGCAGCA GTTCGTGGACAACTTCTTCCAGAGCGTGCTGGCGCCCGGGCTCGCGGTGCCCCCCGCCGT CAAGTACTTCTTCGACTTTCTGGACGAGCAGGCGGAAAAGCATGACATCAAGGACGAGGA CACCATCCACATCTGGAAGACCAACAGTTTGCCGCTGCGGTTCTGGGTGAACATCCTCAA GAATCCCCACTTCATCTTCGACGTGCACGTCCACGAGGTGGTGGACGCCTCCCTCTCGGT CATCGCGCAAACCTTCATGGACGCCTGTACGCGCACGGAGCACAAGCTGAGCCGCGACTC TCCCAGCAACAAGCTTCTCTACGCCAAGGAGATCTCCACCTACAAGAAGATGGTGGAGGA CTACTACAAGGGGATCAGACAGATGGTGCAGGTCAGCGACCAGGACATGAACACCCACCT GGCAGAGATCTCCCGGGCACACACGGACTCCCTGAACACGCTCGTGGCGCTGCACCAGCT CTACCAGTACACGCAGAAGTACTATGACGAGATCATCAACGCCCTGGAGGAGGATCCTGC CGCCCAGAAGATGCAGCTGGCCTTCCGGCTCCAGCAGATTGCCGCTGCACTCGAGAACAA GGTCACGGACCTCTGACCTCCAACTCCTCTGTTCCGGTCTCAGGGCGCAGGTGCGTGATG CCCGGGGCCGGGCTCGGGCACCCTTGGGGAATGTGGCTGAGTCGGCAGGGTTGACGAGCC CCCGGGCTTCCAAGCGCACGCGGCGTGGCGGGCAGCCCCCACCTCCATGTTGGAAGCTAC ATGGCCCCTTTCTCCTGAGCAATAGTGCGGGGCGCCCAGCAGCACCAGCTCCCTCCTGCA GAACCAGCATCGCCTGGGGTCTCCTTCACGTCTCCCGAGTGATTTGAAAACGTGCCTTAT ACTCCCGGCGCCACGCTGGGTCTCTGGGGGCGGTCGGGCCTCAGCCCCCTCCCCGAGCAC CAGCAGCCACCTCGGATACCTGGGTTTGGCCCTTTTGGGTGGGATCTGAGTGCCTGCAGC CCCCGGGACCTAGCGCCCAGACTGCCTTGCCGGGCTGGGGGTAGAAAACCGGTACAATGC CTTGCTGACCTCGACGGCTTGCCCTGCGGCGCGGGCACTCCGGTGGACTCGGCGCTGGAG ACCCCACCTCAAGCTGGACGTCACACGTCAAGGCCCAGGCGGCCAGAAGGGACCCAGCAG ACTGGGGGTCCTGGTCTCCGCCTGTCAGACAGGCCGACCTGGAGGCCCTGCCTGGGTCTG GGGAGCCAGGAGCAGCTCCGCCAGGACCGCCCCCGACCCTTTTTGTAAATCTTGTTCATT GTAAATCAAATACAATTGTGTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1386-1584, + strand, RNAz p=0.997827 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1386-1584, + strand, RNAz p=0.997827 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 72-227, gnl|bosTau2|chr5 (75988378-75988533) | |
| 72-227, gnl|canFam2|chr10 (19963023-19962926) | |
| 72-227, gnl|danRer3|chr4 (17672326-17672229) | |
| 72-227, gnl|dasNov1|scaffold_97784 (4915-4818) | |
| 72-227, gnl|echTel1|scaffold_234936 (4039-3942) | |
| 72-227, gnl|fr1|chrUn (180211239-180211336) | |
| 72-227, gnl|galGal2|chrUn (119090263-119090166) | |
| 72-227, gnl|hg17|chr22 (49019003-49019100) | |
| 72-227, gnl|Hg17|chr22 (49019157-49019002) | |
| 72-227, gnl|loxAfr1|scaffold_138854 (4087-3978) | |
| 72-227, gnl|mm7|chr15 (89240236-89240333) | |
| 72-227, gnl|Mm7|chr15 (89240390-89240235) | |
| 72-227, gnl|monDom2|scaffold_119 (619479-619576) | |
| 72-227, gnl|oryCun1|scaffold_179224 (32223-32135) | |
| 72-227, gnl|panTro1|chr23 (49466557-49466654) | |
| 72-227, gnl|rheMac2|chr10 (94283506-94283603) | |
| 72-227, gnl|rn3|chr7 (127494224-127494321) | |
| 72-227, gnl|tetNig1|chr13 (9184540-9184443) | |
| 72-227, gnl|xenTro1|scaffold_668 (288631-288534) | |
| 385-534, gnl|bosTau2|chr22 (38988520-38988371) | |
| 385-534, gnl|Hg17|chr3 (48425891-48425742) | |
| 385-534, gnl|Mm7|chr9 (108825083-108825232) | |
| 536-694, gnl|bosTau2|chr8 (40921581-40921424) | |
| 536-694, gnl|Hg17|chr3 (130758764-130758598) | |
| 536-694, gnl|Mm7|chr6 (115982408-115982255) | |
| 750-852, gnl|bosTau2|chr22 (38983156-38983054) | |
| 750-852, gnl|Hg17|chr3 (48421003-48420901) | |
| 750-852, gnl|Mm7|chr9 (108828101-108828203) | |
| 1348-1584, gnl|bosTau2|chr20 (34864856-34865098) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-227, gnl|bosTau2|chr5 (75988378-75988533) | |
| 72-227, gnl|canFam2|chr10 (19963023-19962926) | |
| 72-227, gnl|danRer3|chr4 (17672326-17672229) | |
| 72-227, gnl|dasNov1|scaffold_97784 (4915-4818) | |
| 72-227, gnl|echTel1|scaffold_234936 (4039-3942) | |
| 72-227, gnl|fr1|chrUn (180211239-180211336) | |
| 72-227, gnl|galGal2|chrUn (119090263-119090166) | |
| 72-227, gnl|hg17|chr22 (49019003-49019100) | |
| 72-227, gnl|Hg17|chr22 (49019157-49019002) | |
| 72-227, gnl|loxAfr1|scaffold_138854 (4087-3978) | |
| 72-227, gnl|mm7|chr15 (89240236-89240333) | |
| 72-227, gnl|Mm7|chr15 (89240390-89240235) | |
| 72-227, gnl|monDom2|scaffold_119 (619479-619576) | |
| 72-227, gnl|oryCun1|scaffold_179224 (32223-32135) | |
| 72-227, gnl|panTro1|chr23 (49466557-49466654) | |
| 72-227, gnl|rheMac2|chr10 (94283506-94283603) | |
| 72-227, gnl|rn3|chr7 (127494224-127494321) | |
| 72-227, gnl|tetNig1|chr13 (9184540-9184443) | |
| 72-227, gnl|xenTro1|scaffold_668 (288631-288534) | |
| 385-534, gnl|bosTau2|chr22 (38988520-38988371) | |
| 385-534, gnl|Hg17|chr3 (48425891-48425742) | |
| 385-534, gnl|Mm7|chr9 (108825083-108825232) | |
| 536-694, gnl|bosTau2|chr8 (40921581-40921424) | |
| 536-694, gnl|Hg17|chr3 (130758764-130758598) | |
| 536-694, gnl|Mm7|chr6 (115982408-115982255) | |
| 750-852, gnl|bosTau2|chr22 (38983156-38983054) | |
| 750-852, gnl|Hg17|chr3 (48421003-48420901) | |
| 750-852, gnl|Mm7|chr9 (108828101-108828203) | |
| 1348-1584, gnl|bosTau2|chr20 (34864856-34865098) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| pro (0.512033) | |
| eru (0.480192) | |
| clu (0.478583) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| hea (0.204499) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| eru (0.480192) | |
| clu (0.478583) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| pty (0.285429) | |
| cga (0.279096) | |
| nmm (0.265604) | |
| ebs (0.236602) | |
| nms (0.213858) | |
| hea (0.204499) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |