Ss1.1-Pig4-TMW8021E16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCACGGGGTGCCGTCCGCGCCCGTGAGCGCCTGCGCGGGGTTGGCGCGGGTCTGGCCGG CATGGCGTTCCGGCAGGCGCTGCAGCTGGCGGCCTGCGGCCTGGCTGGGGGCTCGGCTGC GGTCCTTTTCTCCGCAGTGGCGGTGGGGAAGCCCCGCGCGGGCGGGGACGCGGAGCCGCG CGTGGTCGAGCCGCCGGCGTGGGCGGGGGCCGCGCGCCCCGGGCCCGGCGTCTGGGACCC CAACTGGGACAGGCGAGAACCTCTATCCCTGGTCAATCTGCGGAAGAGGAACCTTGAACC CGGAGAAGAAGAGCTGGCGTCCAGGCTGGACCACTACAAAGCCAAGGCCACTCGGCACAT CTTCCTCATCAGGCACTCCCAGTACCATGTGGACGCCTCCCTGGAGAAGGACCGCACGCT GACACCCCTGGGTCGTGAGCAGGCTGAGCTAACTGGTCTCCGTCTTGCAAGCTTGGGGTT GAAATTTAATAAAATCGTCCATTCCTCCATGACCCGCGCCATAGAAACCACTGACATCAT CAGCAAACACCTGCCAGGCGTCTGCAGGGTCAGCACAGACCTGCTCAGGGAGGGCGCCCC CATCGAGCCCGATCCCCCAGTGTCTCACTGGAAGCCAGAGGCTGTGTATTACGAAGATGG CGCGAGGATCGAGGCTGCCTTCCGGAACTACATCCACCGGGCTGATGCCAAGCAGCAGGA GGACAGTTATGAGATCTTCATCTGCCACGCCAATGTCATCCGTTACATCGTGTGCCGGGC GCTGCAGTTCCCCCCAGAAGGCTGGCTCCGTCTTTCCCTCAACAACGGCAGCATCACCCA CCTGGTGGTCCGGCCAGATGGCCGCGTGGCGCTCAGGGCCCTCGGGGACACAGGGTTCAT GCCTCCTGACAAGATCTCCCGCTCCTGAGGGCGGCCCCCAGGCCCTGCTCTTCTCCACAG CCCCTGCCTGGCCTCGGGAACACAGGCTTCTCCGGGTCTTCCCTCTAGGGTGAGGCCTCG GCAGGCGGGAGTGGCCACTGAGGGGGCAAGCTGGCAAGCTCCTGGCCAGGGCGGGAAAGG GAAACACTCAGAGTGTTTCTGCCTGGCTCTCGCCTACCAGCATGAGGCTGTGGGGCTTAG GGAGGCCGGTTTGAGGGACTGGACGAGGCTGGCAGACGCCAAGAGTCCTGGCCCTCTGGC CCCTTTGCAGGTCCTCCGCCAGGCAGGAAGAGGAGGGCACCAGTGCTTCCGTTCTTAACT TATTTTGCTTCATATGTTTTCACTTCTTAAAATTCTTTTGTCACTGAAGTATTTGTCAAA TAAAGATTTTCCTCGTCTGGGTTCTTTGAAAACCAACTTCTCACTCCATAGTTCCACACC CTGATGCTTTTGGATGTGAAACTCACCTGTGTCACCAGGCCTGTTCCGACACACAGGAGC ACCCCAGCAGGTGACAGCAACCGTAGGTCTCACAGGAGGGGCCAGGTAGTCGCACTGAGA GGTCCAGCTGACGGTTTAATCTTCGTTGGCCTCTGGCTGTTACTCTCTTAGGCTTATGGG TTAAAATGCTTAGATACGATGTGTCTGTCCAGATTTGTTAATTTAGGAAAAACTTTAATT TCTATGAAGTGGTTATGAACATTTTCTGCAATCAGTGAAACTAATTGGGATGTCTGATCC ATCTCTGTCAACTTTGGAAGTAACTACAAAATAAAATTTTATTTTACTTTTTTCAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCACGGGGTGCCGTCCGCGCCCGTGAGCGCCTGCGCGGGGTTGGCGCGGGTCTGGCCGG CATGGCGTTCCGGCAGGCGCTGCAGCTGGCGGCCTGCGGCCTGGCTGGGGGCTCGGCTGC GGTCCTTTTCTCCGCAGTGGCGGTGGGGAAGCCCCGCGCGGGCGGGGACGCGGAGCCGCG CGTGGTCGAGCCGCCGGCGTGGGCGGGGGCCGCGCGCCCCGGGCCCGGCGTCTGGGACCC CAACTGGGACAGGCGAGAACCTCTATCCCTGGTCAATCTGCGGAAGAGGAACCTTGAACC CGGAGAAGAAGAGCTGGCGTCCAGGCTGGACCACTACAAAGCCAAGGCCACTCGGCACAT CTTCCTCATCAGGCACTCCCAGTACCATGTGGACGCCTCCCTGGAGAAGGACCGCACGCT GACACCCCTGGGTCGTGAGCAGGCTGAGCTAACTGGTCTCCGTCTTGCAAGCTTGGGGTT GAAATTTAATAAAATCGTCCATTCCTCCATGACCCGCGCCATAGAAACCACTGACATCAT CAGCAAACACCTGCCAGGCGTCTGCAGGGTCAGCACAGACCTGCTCAGGGAGGGCGCCCC CATCGAGCCCGATCCCCCAGTGTCTCACTGGAAGCCAGAGGCTGTGTATTACGAAGATGG CGCGAGGATCGAGGCTGCCTTCCGGAACTACATCCACCGGGCTGATGCCAAGCAGCAGGA GGACAGTTATGAGATCTTCATCTGCCACGCCAATGTCATCCGTTACATCGTGTGCCGGGC GCTGCAGTTCCCCCCAGAAGGCTGGCTCCGTCTTTCCCTCAACAACGGCAGCATCACCCA CCTGGTGGTCCGGCCAGATGGCCGCGTGGCGCTCAGGGCCCTCGGGGACACAGGGTTCAT GCCTCCTGACAAGATCTCCCGCTCCTGAGGGCGGCCCCCAGGCCCTGCTCTTCTCCACAG CCCCTGCCTGGCCTCGGGAACACAGGCTTCTCCGGGTCTTCCCTCTAGGGTGAGGCCTCG GCAGGCGGGAGTGGCCACTGAGGGGGCAAGCTGGCAAGCTCCTGGCCAGGGCGGGAAAGG GAAACACTCAGAGTGTTTCTGCCTGGCTCTCGCCTACCAGCATGAGGCTGTGGGGCTTAG GGAGGCCGGTTTGAGGGACTGGACGAGGCTGGCAGACGCCAAGAGTCCTGGCCCTCTGGC CCCTTTGCAGGTCCTCCGCCAGGCAGGAAGAGGAGGGCACCAGTGCTTCCGTTCTTAACT TATTTTGCTTCATATGTTTTCACTTCTTAAAATTCTTTTGTCACTGAAGTATTTGTCAAA TAAAGATTTTCCTCGTCTGGGTTCTTTGAAAACCAACTTCTCACTCCATAGTTCCACACC CTGATGCTTTTGGATGTGAAACTCACCTGTGTCACCAGGCCTGTTCCGACACACAGGAGC ACCCCAGCAGGTGACAGCAACCGTAGGTCTCACAGGAGGGGCCAGGTAGTCGCACTGAGA GGTCCAGCTGACGGTTTAATCTTCGTTGGCCTCTGGCTGTTACTCTCTTAGGCTTATGGG TTAAAATGCTTAGATACGATGTGTCTGTCCAGATTTGTTAATTTAGGAAAAACTTTAATT TCTATGAAGTGGTTATGAACATTTTCTGCAATCAGTGAAACTAATTGGGATGTCTGATCC ATCTCTGTCAACTTTGGAAGTAACTACAAAATAAAATTTTATTTTACTTTTTTCAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 816-974, - strand, RNAz p=0.579207 | |
| 856-974, - strand, RNAz p=0.896279 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 816-974, - strand, RNAz p=0.579207 | |
| 856-974, - strand, RNAz p=0.896279 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 12-253, gnl|bosTau2|chr17 (23121383-23121626) | |
| 12-253, gnl|Hg17|chr12 (131897775-131898004) | |
| 12-253, gnl|Mm7|chr5 (109436377-109436174) | |
| 431-565, gnl|bosTau2|chr17 (23125710-23125844) | |
| 431-565, gnl|canFam2|chr26 (3412585-3412705) | |
| 431-565, gnl|danRer3|chr5 (9100482-9100359) | |
| 431-565, gnl|dasNov1|scaffold_71465 (3629-3755) | |
| 431-565, gnl|echTel1|scaffold_194902 (12314-12437) | |
| 431-565, gnl|fr1|chrUn (71854615-71854741) | |
| 431-565, gnl|Hg17|chr12 (131904374-131904508) | |
| 431-565, gnl|hg17|chr5 (109248582-109248708) | |
| 431-565, gnl|mm7|chr5 (109432438-109432564) | |
| 431-565, gnl|Mm7|chr5 (109432560-109432426) | |
| 431-565, gnl|monDom2|scaffold_54 (1368489-1368369) | |
| 431-565, gnl|oryCun1|scaffold_189106 (6709-6832) | |
| 431-565, gnl|panTro1|chr4 (115334881-115335007) | |
| 431-565, gnl|rheMac2|chr6 (106193581-106193707) | |
| 431-565, gnl|rn3|chr12 (46426190-46426070) | |
| 431-565, gnl|tetNig1|chr12 (10838307-10838427) | |
| 777-974, gnl|bosTau2|chr17 (23127974-23128170) | |
| 777-974, gnl|canFam2|chr26 (3409922-3409787) | |
| 777-974, gnl|danRer3|chr5 (9107310-9107441) | |
| 777-974, gnl|dasNov1|scaffold_71465 (1597-1456) | |
| 777-974, gnl|echTel1|scaffold_194902 (10950-10812) | |
| 777-974, gnl|fr1|chrUn (71853849-71853720) | |
| 777-974, gnl|galGal2|chr15 (1393904-1394033) | |
| 777-974, gnl|hg17|chr12 (131907600-131907741) | |
| 777-974, gnl|Hg17|chr12 (131907613-131907776) | |
| 777-974, gnl|loxAfr1|scaffold_32966 (9322-9190) | |
| 777-974, gnl|mm7|chr5 (109426974-109426835) | |
| 777-974, gnl|Mm7|chr5 (109426961-109426769) | |
| 777-974, gnl|monDom2|scaffold_54 (1371517-1371658) | |
| 777-974, gnl|oryCun1|scaffold_189106 (4673-4537) | |
| 777-974, gnl|panTro1|chr10 (134764431-134764570) | |
| 777-974, gnl|rheMac2|chr11 (134017493-134017636) | |
| 777-974, gnl|rn3|chr12 (46428155-46428294) | |
| 777-974, gnl|tetNig1|chr12 (10837607-10837478) | |
| 777-974, gnl|xenTro1|scaffold_118 (1573081-1573222) | |
| 1493-1737, gnl|bosTau2|chr17 (23128788-23129027) | |
| 1493-1737, gnl|Hg17|chr12 (131909101-131909670) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-253, gnl|bosTau2|chr17 (23121383-23121626) | |
| 12-253, gnl|Hg17|chr12 (131897775-131898004) | |
| 12-253, gnl|Mm7|chr5 (109436377-109436174) | |
| 431-565, gnl|bosTau2|chr17 (23125710-23125844) | |
| 431-565, gnl|canFam2|chr26 (3412585-3412705) | |
| 431-565, gnl|danRer3|chr5 (9100482-9100359) | |
| 431-565, gnl|dasNov1|scaffold_71465 (3629-3755) | |
| 431-565, gnl|echTel1|scaffold_194902 (12314-12437) | |
| 431-565, gnl|fr1|chrUn (71854615-71854741) | |
| 431-565, gnl|Hg17|chr12 (131904374-131904508) | |
| 431-565, gnl|hg17|chr5 (109248582-109248708) | |
| 431-565, gnl|mm7|chr5 (109432438-109432564) | |
| 431-565, gnl|Mm7|chr5 (109432560-109432426) | |
| 431-565, gnl|monDom2|scaffold_54 (1368489-1368369) | |
| 431-565, gnl|oryCun1|scaffold_189106 (6709-6832) | |
| 431-565, gnl|panTro1|chr4 (115334881-115335007) | |
| 431-565, gnl|rheMac2|chr6 (106193581-106193707) | |
| 431-565, gnl|rn3|chr12 (46426190-46426070) | |
| 431-565, gnl|tetNig1|chr12 (10838307-10838427) | |
| 777-974, gnl|bosTau2|chr17 (23127974-23128170) | |
| 777-974, gnl|canFam2|chr26 (3409922-3409787) | |
| 777-974, gnl|danRer3|chr5 (9107310-9107441) | |
| 777-974, gnl|dasNov1|scaffold_71465 (1597-1456) | |
| 777-974, gnl|echTel1|scaffold_194902 (10950-10812) | |
| 777-974, gnl|fr1|chrUn (71853849-71853720) | |
| 777-974, gnl|galGal2|chr15 (1393904-1394033) | |
| 777-974, gnl|hg17|chr12 (131907600-131907741) | |
| 777-974, gnl|Hg17|chr12 (131907613-131907776) | |
| 777-974, gnl|loxAfr1|scaffold_32966 (9322-9190) | |
| 777-974, gnl|mm7|chr5 (109426974-109426835) | |
| 777-974, gnl|Mm7|chr5 (109426961-109426769) | |
| 777-974, gnl|monDom2|scaffold_54 (1371517-1371658) | |
| 777-974, gnl|oryCun1|scaffold_189106 (4673-4537) | |
| 777-974, gnl|panTro1|chr10 (134764431-134764570) | |
| 777-974, gnl|rheMac2|chr11 (134017493-134017636) | |
| 777-974, gnl|rn3|chr12 (46428155-46428294) | |
| 777-974, gnl|tetNig1|chr12 (10837607-10837478) | |
| 777-974, gnl|xenTro1|scaffold_118 (1573081-1573222) | |
| 1493-1737, gnl|bosTau2|chr17 (23128788-23129027) | |
| 1493-1737, gnl|Hg17|chr12 (131909101-131909670) |
| Expressed library(ies): 31 entry(ies) | More info |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
| cje (0.826173) | |
| vin (0.665115) | |
| cut (0.509771) | |
| che (0.408942) | |
| gul (0.355177) | |
| sin (0.349895) | |
| spc (0.340097) | |
| nje (0.33184) | |
| fat (0.294855) | |
| csk (0.281492) | |
| hlv (0.278513) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 31 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.826173) | |
| vin (0.665115) | |
| cut (0.509771) | |
| che (0.408942) | |
| gul (0.355177) | |
| sin (0.349895) | |
| spc (0.340097) | |
| nje (0.33184) | |
| fat (0.294855) | |
| csk (0.281492) | |
| hlv (0.278513) | |
| tes (0.207814) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cli (0.152812) | |
| isp (0.150376) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| thg (0.126791) | |
| eru (0.120048) | |
| cty (0.10408) |