Non-Coding RNA Search

Ss1.1-Pig4-TMW8021F08.3

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTATTCACATTTATTTTTCGCTT
TTAGTGTGCTCACAGAAAATTAGAACACCTTAAGCAGGAGTTTAATAGCAATTTTTGTAA
GCAAAGTTACATTCCATCTCTAAGTCAAATTGGTCAAAGCTTCTCCAGTATTTACAAAAC
ATGATAGACAAGATGCTACACAAAACCATTGCATCTGAAGTTTTTCCTTAATCTCAAAGA
CGACTGGAAAAGAAAGCATTGTCTGCTGTAATCAAAAACATACCACAGTATAAACAGTAA
CCATTCCACTTATCACAGCTTGGTTGAGTTTAAAATTTGTGTTTAAAAGGTCCAAGATGA
CTGCAGTTTTACAAAAATGGGCAGGGTGGAAAGTTGCAAACTTCATGTGCTTCTGGATAT
CAAGATTTGTTTTTATACAATAGTCACAGTTAAAAACACCCTGCTGGTAATACATAATTA
CACTTTATTAAGGTCATAAACCAGCAATAAACAATAAAGCCTATACAACTTGTAGTTCTA
CTTAATCACTGACTGGTACAGCTAACATGAGATAAGTGAAAAGTTCCTATGGTTTAAATG
AACTCCTAAGACTATGATCTTTTTAAAAATCTGGGTATTGGGTTTTTTTTTTTCCCTCTC
TTTCCTTCTTAGTCAAGACTTGTAGTGTTGTAAACCTGCCTCACAAAATACATCGTAATA
ACTTTTCTTTAAAAAAAAAAAAAAAAGACTAAGCCTTTACACCATTTCTAGTGGTACATT
ATCTTGGCAATGTTACGTACCACTTAAATTTCCCCATCCTGGCCGCTATCACTTCATCTG
ATATCCCTTTTTGACCCACCCATCTCCTTCATATATGGGCACGTCGTCCATAGATTGACA
AAGAAAGTTTACATTTTTGAATAAAGATGCAAAGTATGCAAAAAACATTAATACTGATGC
AAAAAATAAAAATAAAAGAGAAACAAGGCAGAGGAAGGTATTTAAGCTCTCCTCCACCTG
TTGGAATGGTGGTAACAGAATGATCTGAGATGGGATCTGCGGGGAGGGGAGAAAAAAAAA
TTTGCTGCTTAAAAAAAAAGTAAAATAAAAAAAGACATCTTTAAAATCAATCCCTGGTTG
TAGACAAGTTCTCCAAAACCAGTACCTGGCACCACTCCAACAAACAAACTGGGGGGAGAA
AAGTTCTTCGATTATCTCAAAAAATCTCGCCCGTTTACTCTGCCGCCTCCGCTGGGGGGG
CTTCTGGACTGCACTCGGGCTGGGTCTCCTGTGAGGGGGCTGCGCAGGCTGACGACGCCG
CGGCGGCCGCCTCCTCCGCGGGGGCCGCCTCCTGCTCCGCTGGGGCGCCGAGCCCTGCGG
CTGAGGGCGCCTCGCAGGCAGCCGCGCTGGCACCCGGCTCCTCGACCTTCTCCTCGGCCT
TGCTGGGCTCCTCGGCGGCCTTGGTCTCCTCGCTGGCGGGCGGTTTCTCCGGCGCGACGG
CAGCCTCTTCTGGCTTGGCCTCCTGCGGGTCGCCCCCCGCCGCCCCCTCCTCGCCTGCAG
CAGCCTCCTCGCTCGGCGCCGCCGCCGGCTCCCCGGAGGCTGCGCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTTTATTCACATTTATTTTTCGCTT
TTAGTGTGCTCACAGAAAATTAGAACACCTTAAGCAGGAGTTTAATAGCAATTTTTGTAA
GCAAAGTTACATTCCATCTCTAAGTCAAATTGGTCAAAGCTTCTCCAGTATTTACAAAAC
ATGATAGACAAGATGCTACACAAAACCATTGCATCTGAAGTTTTTCCTTAATCTCAAAGA
CGACTGGAAAAGAAAGCATTGTCTGCTGTAATCAAAAACATACCACAGTATAAACAGTAA
CCATTCCACTTATCACAGCTTGGTTGAGTTTAAAATTTGTGTTTAAAAGGTCCAAGATGA
CTGCAGTTTTACAAAAATGGGCAGGGTGGAAAGTTGCAAACTTCATGTGCTTCTGGATAT
CAAGATTTGTTTTTATACAATAGTCACAGTTAAAAACACCCTGCTGGTAATACATAATTA
CACTTTATTAAGGTCATAAACCAGCAATAAACAATAAAGCCTATACAACTTGTAGTTCTA
CTTAATCACTGACTGGTACAGCTAACATGAGATAAGTGAAAAGTTCCTATGGTTTAAATG
AACTCCTAAGACTATGATCTTTTTAAAAATCTGGGTATTGGGTTTTTTTTTTTCCCTCTC
TTTCCTTCTTAGTCAAGACTTGTAGTGTTGTAAACCTGCCTCACAAAATACATCGTAATA
ACTTTTCTTTAAAAAAAAAAAAAAAAGACTAAGCCTTTACACCATTTCTAGTGGTACATT
ATCTTGGCAATGTTACGTACCACTTAAATTTCCCCATCCTGGCCGCTATCACTTCATCTG
ATATCCCTTTTTGACCCACCCATCTCCTTCATATATGGGCACGTCGTCCATAGATTGACA
AAGAAAGTTTACATTTTTGAATAAAGATGCAAAGTATGCAAAAAACATTAATACTGATGC
AAAAAATAAAAATAAAAGAGAAACAAGGCAGAGGAAGGTATTTAAGCTCTCCTCCACCTG
TTGGAATGGTGGTAACAGAATGATCTGAGATGGGATCTGCGGGGAGGGGAGAAAAAAAAA
TTTGCTGCTTAAAAAAAAAGTAAAATAAAAAAAGACATCTTTAAAATCAATCCCTGGTTG
TAGACAAGTTCTCCAAAACCAGTACCTGGCACCACTCCAACAAACAAACTGGGGGGAGAA
AAGTTCTTCGATTATCTCAAAAAATCTCGCCCGTTTACTCTGCCGCCTCCGCTGGGGGGG
CTTCTGGACTGCACTCGGGCTGGGTCTCCTGTGAGGGGGCTGCGCAGGCTGACGACGCCG
CGGCGGCCGCCTCCTCCGCGGGGGCCGCCTCCTGCTCCGCTGGGGCGCCGAGCCCTGCGG
CTGAGGGCGCCTCGCAGGCAGCCGCGCTGGCACCCGGCTCCTCGACCTTCTCCTCGGCCT
TGCTGGGCTCCTCGGCGGCCTTGGTCTCCTCGCTGGCGGGCGGTTTCTCCGGCGCGACGG
CAGCCTCTTCTGGCTTGGCCTCCTGCGGGTCGCCCCCCGCCGCCCCCTCCTCGCCTGCAG
CAGCCTCCTCGCTCGGCGCCGCCGCCGGCTCCCCGGAGGCTGCGCCCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-266, - strand, RNAz p=0.538999

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-266, - strand, RNAz p=0.538999

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002356, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002356, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-266, gnl|bosTau2|chr2 (76936958-76937201)
               

               
               24-266, gnl|Hg17|chr6 (114289678-114289436)
               

               
               24-266, gnl|Mm7|chr10 (36915951-36916196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-266, gnl|bosTau2|chr2 (76936958-76937201)
               

               
               24-266, gnl|Hg17|chr6 (114289678-114289436)
               

               
               24-266, gnl|Mm7|chr10 (36915951-36916196)

Expressed library(ies): 49 entry(ies)

More info

Expressed library(ies): 49 entry(ies)

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               cbl (1.83676)
               

               
               ecc (1.15035)
               

               
               spl (1.14548)
               

               
               ese (1.13852)
               

               
               eru (1.08043)
               

               
               fco (0.943248)
               

               
               col (0.780031)
               

               
               ebs (0.709807)
               

               
               ova (0.645661)
               

               
               mga (0.64082)
               

               
               tra (0.61546)
               

               
               fcc (0.593354)
               

               
               eye (0.511509)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               lnt (0.426925)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

Expressed library(ies): 49 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.83676)
               

               
               ecc (1.15035)
               

               
               spl (1.14548)
               

               
               ese (1.13852)
               

               
               eru (1.08043)
               

               
               fco (0.943248)
               

               
               col (0.780031)
               

               
               ebs (0.709807)
               

               
               ova (0.645661)
               

               
               mga (0.64082)
               

               
               tra (0.61546)
               

               
               fcc (0.593354)
               

               
               eye (0.511509)
               

               
               fat (0.442282)
               

               
               liv (0.438853)
               

               
               lnt (0.426925)
               

               
               ret (0.3862)
               

               
               elu (0.385356)
               

               
               sug (0.381874)
               

               
               bla (0.373042)
               

               
               rec (0.346141)
               

               
               fhi (0.339155)
               

               
               bfe (0.299715)
               

               
               eje (0.296501)
               

               
               lin (0.291206)
               

               
               hyp (0.285673)
               

               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)
               

               
               ldo (0.0970026)

	24-266, gnl\|bosTau2\|chr2 (76936958-76937201)
	24-266, gnl\|Hg17\|chr6 (114289678-114289436)
	24-266, gnl\|Mm7\|chr10 (36915951-36916196)

	cbl (1.83676)
	ecc (1.15035)
	spl (1.14548)
	ese (1.13852)
	eru (1.08043)
	fco (0.943248)
	col (0.780031)
	ebs (0.709807)
	ova (0.645661)
	mga (0.64082)
	tra (0.61546)
	fcc (0.593354)
	eye (0.511509)
	fat (0.442282)
	liv (0.438853)
	lnt (0.426925)
	ret (0.3862)
	elu (0.385356)
	sug (0.381874)
	bla (0.373042)
	rec (0.346141)
	fhi (0.339155)
	bfe (0.299715)
	eje (0.296501)
	lin (0.291206)
	hyp (0.285673)
	pla (0.267344)
	ute (0.265569)
	eep (0.245128)
	med (0.232504)
	nms (0.213858)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	sin (0.174948)
	cut (0.169924)
	nje (0.16592)
	eli (0.151814)
	pty (0.142714)
	lyg (0.133103)
	kid (0.129735)
	thg (0.126791)
	cly (0.120642)
	pgl (0.118483)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	nbm (0.0993246)
	ldo (0.0970026)