Non-Coding RNA Search

Ss1.1-Pig4-TMW8021F13.3.68

Sequence:


               
               GAGCCCCGGCTTCTCAGACAACATGAAGACTCTCCTCGTTCTTGCGCTTCTCCTCCTTTC
TGTCTCTGTACAGGCCAAGGTCTATGATCGGTGCGAGTTCGCCAGAATTCTGAAAAAGTC
TGGCATGGACGGCTATAGGGGAGTCAGCCTGGCGAACTGGGTGTGTTTGGCCAAGTGGGA
AAGTGATTTTAACACAAAAGCTATAAACCGCAATGTTGGAAGCACTGATTATGGAATATT
TCAAATTAATAGCCGCTACTGGTGTAATGATGGCAAGACACCCAAAGCAGTTAATGCCTG
TCACATATCCTGCAAAGTTTTGCTGGACGATGACCTCAGTCAAGATATAGAATGTGCAAA
GAGGGTTGTCAGAGATCCACAAGGCATTAAAGCATGGGTGGCATGGAGAACTCATTGTCA
GAACAAAGATGTCTCGCAGTACATTCGGGGTTGCAAACTGTAACTGTGCAGTTTTCCTTC
TTCAGCTCACCTTGTCTCTTTTTCATATTTAGGAAATAATAGTTGAATGAAAGGTCATAC
TACCATTCTTGTGAACAAATCATGGTTTTACCGAAGCAAGAGCATAAGGTCTTTCTTTAA
GAGGCTTAATGTTTACCTAATGTGTTTATTGTTTGTGTTTATTGTTTTATAGGCCTACAA
TATTTTTCAATTTGCTAAGAGAATTATTGTTGGTCTGAAATCTTAATTATCAAATATACC
TCCAGTACATTCAGTTCTTAATCAAAGAAATAAACCAGAAACAGTCTTCATCTGTTCAGT
TATCTCTAAAAACAGTAAAAGATAACCAGTCTTTGTTGGGTAATATAAAATTTTAAAAGG
AGCAGAATGCCAGATGGCTAAAAATGAAGACAACCTGAATTAAGAATTTTGCTTTCATAA
AGTGTGACCTTTGGCTTAAATGTTTTCTCAGAGATGATTCGTTCATTAAAACGAATTTTA
AAATAGTCTCACAATTTAGGTATCCATCTCTTTTAGCCTTTTAAAAACTCATTTATGCAT
TTTGCTGACCATGAAGGAATATAAAGAGGGATTAGATGAGCTGTGCTTTTCCTGAACTTT
ATCAGCTTGAATTCATGCATTATGACTAAATTCAGAGGCAGATGAATTCGCAGGCATTGA
AATAATTGCTAATTAACCACAGGTGTGAATTTATGCATGCTGTAAAAAGTACAAACATTA
TCATTAAAAGCTTTGCAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCCCGGCTTCTCAGACAACATGAAGACTCTCCTCGTTCTTGCGCTTCTCCTCCTTTC
TGTCTCTGTACAGGCCAAGGTCTATGATCGGTGCGAGTTCGCCAGAATTCTGAAAAAGTC
TGGCATGGACGGCTATAGGGGAGTCAGCCTGGCGAACTGGGTGTGTTTGGCCAAGTGGGA
AAGTGATTTTAACACAAAAGCTATAAACCGCAATGTTGGAAGCACTGATTATGGAATATT
TCAAATTAATAGCCGCTACTGGTGTAATGATGGCAAGACACCCAAAGCAGTTAATGCCTG
TCACATATCCTGCAAAGTTTTGCTGGACGATGACCTCAGTCAAGATATAGAATGTGCAAA
GAGGGTTGTCAGAGATCCACAAGGCATTAAAGCATGGGTGGCATGGAGAACTCATTGTCA
GAACAAAGATGTCTCGCAGTACATTCGGGGTTGCAAACTGTAACTGTGCAGTTTTCCTTC
TTCAGCTCACCTTGTCTCTTTTTCATATTTAGGAAATAATAGTTGAATGAAAGGTCATAC
TACCATTCTTGTGAACAAATCATGGTTTTACCGAAGCAAGAGCATAAGGTCTTTCTTTAA
GAGGCTTAATGTTTACCTAATGTGTTTATTGTTTGTGTTTATTGTTTTATAGGCCTACAA
TATTTTTCAATTTGCTAAGAGAATTATTGTTGGTCTGAAATCTTAATTATCAAATATACC
TCCAGTACATTCAGTTCTTAATCAAAGAAATAAACCAGAAACAGTCTTCATCTGTTCAGT
TATCTCTAAAAACAGTAAAAGATAACCAGTCTTTGTTGGGTAATATAAAATTTTAAAAGG
AGCAGAATGCCAGATGGCTAAAAATGAAGACAACCTGAATTAAGAATTTTGCTTTCATAA
AGTGTGACCTTTGGCTTAAATGTTTTCTCAGAGATGATTCGTTCATTAAAACGAATTTTA
AAATAGTCTCACAATTTAGGTATCCATCTCTTTTAGCCTTTTAAAAACTCATTTATGCAT
TTTGCTGACCATGAAGGAATATAAAGAGGGATTAGATGAGCTGTGCTTTTCCTGAACTTT
ATCAGCTTGAATTCATGCATTATGACTAAATTCAGAGGCAGATGAATTCGCAGGCATTGA
AATAATTGCTAATTAACCACAGGTGTGAATTTATGCATGCTGTAAAAAGTACAAACATTA
TCATTAAAAGCTTTGCAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|126593|sp|P12067|LYSC1_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|126593|sp|P12067|LYSC1_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               760-879, + strand, RNAz p=0.600034

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               760-879, + strand, RNAz p=0.600034

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-159, gnl|bosTau2|chr5 (29035991-29035833)
               

               
               1-159, gnl|Hg17|chr12 (68028434-68028592)
               

               
               1-159, gnl|Mm7|chr10 (116746483-116746320)
               


               
               396-746, gnl|bosTau2|chr5 (29028699-29028356)
               

               
               396-746, gnl|Hg17|chr12 (68033199-68033546)
               

               
               396-746, gnl|Mm7|chr10 (116742367-116741945)
               


               
               760-1243, gnl|bosTau2|chr24 (27056409-27055935)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-159, gnl|bosTau2|chr5 (29035991-29035833)
               

               
               1-159, gnl|Hg17|chr12 (68028434-68028592)
               

               
               1-159, gnl|Mm7|chr10 (116746483-116746320)
               


               
               396-746, gnl|bosTau2|chr5 (29028699-29028356)
               

               
               396-746, gnl|Hg17|chr12 (68033199-68033546)
               

               
               396-746, gnl|Mm7|chr10 (116742367-116741945)
               


               
               760-1243, gnl|bosTau2|chr24 (27056409-27055935)

Expressed library(ies): 28 entry(ies)

More info

Expressed library(ies): 28 entry(ies)

Help | Less info


               
               liv (5.55881)
               

               
               sag (3.28887)
               

               
               sin (2.09937)
               

               
               ute (1.46063)
               

               
               col (1.36505)
               

               
               ret (1.1586)
               

               
               lin (0.582411)
               

               
               mga (0.480615)
               

               
               spl (0.429553)
               

               
               lyg (0.399308)
               

               
               nlu (0.383362)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 28 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (5.55881)
               

               
               sag (3.28887)
               

               
               sin (2.09937)
               

               
               ute (1.46063)
               

               
               col (1.36505)
               

               
               ret (1.1586)
               

               
               lin (0.582411)
               

               
               mga (0.480615)
               

               
               spl (0.429553)
               

               
               lyg (0.399308)
               

               
               nlu (0.383362)
               

               
               sto (0.359648)
               

               
               rec (0.346141)
               

               
               nmm (0.265604)
               

               
               kid (0.259471)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               tes (0.207814)
               

               
               nbm (0.198649)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               ste (0.135208)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	1-159, gnl\|bosTau2\|chr5 (29035991-29035833)
	1-159, gnl\|Hg17\|chr12 (68028434-68028592)
	1-159, gnl\|Mm7\|chr10 (116746483-116746320)

	396-746, gnl\|bosTau2\|chr5 (29028699-29028356)
	396-746, gnl\|Hg17\|chr12 (68033199-68033546)
	396-746, gnl\|Mm7\|chr10 (116742367-116741945)

	760-1243, gnl\|bosTau2\|chr24 (27056409-27055935)

	liv (5.55881)
	sag (3.28887)
	sin (2.09937)
	ute (1.46063)
	col (1.36505)
	ret (1.1586)
	lin (0.582411)
	mga (0.480615)
	spl (0.429553)
	lyg (0.399308)
	nlu (0.383362)
	sto (0.359648)
	rec (0.346141)
	nmm (0.265604)
	kid (0.259471)
	ova (0.258264)
	tra (0.246184)
	tes (0.207814)
	nbm (0.198649)
	fty (0.17584)
	duo (0.172801)
	eye (0.170503)
	ste (0.135208)
	clu (0.119646)
	pgl (0.118483)
	med (0.116252)
	jca (0.11396)
	jej (0.0989218)