Non-Coding RNA Search

Ss1.1-Pig4-TMW8021F15.3

Sequence:


               
               CAGTGCCTCCTTCCATGTCAGCAGCGAGACCCGCAGCAAGATGACAGCTCCAGACCGTGG
TCAGGATGATGGGCACCGGCATGGCCGGAGTGGAAAAGCCAGTCATCGAGGCAGAGGTCA
AGTGGGGACTGTCCCCGTGCGTTCAGGAAACCCCTGCACACGAGCATCGTGTCCTCCCTC
AGCAAGGCGCCCTCCGCAGCCCCGCTGCCACCCCGGCTCAGACCGAAGACCTCGTTCCCT
GTTGCAGCGAAAGCCACGACCTTGGCTCTGAGCCTGCCAGACGACACTGCACGAGGAGGC
CGAGGGGATCTCCAGTATTCGTGGAAGCAGTCCAGTCCTGTTCGTAGACATACGTGACGT
TGCAGTGTGGAATTGTAAAGTTTCTTTTTTGCACACACTCTGTTTCTCACTGTCTTCATT
CCTTCATGTAGGATGTATGATTTTCTATGTCTTCCACTTCTGACCTGAAAGCTGCTTGGT
GGGGGGATTGGGGAAACAAAATGAACAAACTTCTCTGTGCACTGTGGCAGAACTGTTATT
TTTATGGATTTTACAGCTCAACTAACAGTGTTACCTTTTCAAGATTTATATATACTCTTC
AGAAGAACCACTGAGCCGTTAAAGCCTTGTTATTACTCAATCCTAATAGTGATTCAGTTT
TCTATAGCTTACTTTTAGGGTAGCTGGTAAATTATTTAACATGAAATTTTCCATATCATG
GATTGTAAACCGACAGAAATTATACAATTTCTGAGAAGACATTGATTTATTTAAACTAAT
TCTCAAGTTGTGTTTGAAAGTATGACCTCACAGTCAGCTGTCCATAGCAAACATGTCTAT
ATATGGTTGCCAACGTTTGGTTTATAATTTAAATGTTATTAAAAATTTTAAATTTTAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTGCCTCCTTCCATGTCAGCAGCGAGACCCGCAGCAAGATGACAGCTCCAGACCGTGG
TCAGGATGATGGGCACCGGCATGGCCGGAGTGGAAAAGCCAGTCATCGAGGCAGAGGTCA
AGTGGGGACTGTCCCCGTGCGTTCAGGAAACCCCTGCACACGAGCATCGTGTCCTCCCTC
AGCAAGGCGCCCTCCGCAGCCCCGCTGCCACCCCGGCTCAGACCGAAGACCTCGTTCCCT
GTTGCAGCGAAAGCCACGACCTTGGCTCTGAGCCTGCCAGACGACACTGCACGAGGAGGC
CGAGGGGATCTCCAGTATTCGTGGAAGCAGTCCAGTCCTGTTCGTAGACATACGTGACGT
TGCAGTGTGGAATTGTAAAGTTTCTTTTTTGCACACACTCTGTTTCTCACTGTCTTCATT
CCTTCATGTAGGATGTATGATTTTCTATGTCTTCCACTTCTGACCTGAAAGCTGCTTGGT
GGGGGGATTGGGGAAACAAAATGAACAAACTTCTCTGTGCACTGTGGCAGAACTGTTATT
TTTATGGATTTTACAGCTCAACTAACAGTGTTACCTTTTCAAGATTTATATATACTCTTC
AGAAGAACCACTGAGCCGTTAAAGCCTTGTTATTACTCAATCCTAATAGTGATTCAGTTT
TCTATAGCTTACTTTTAGGGTAGCTGGTAAATTATTTAACATGAAATTTTCCATATCATG
GATTGTAAACCGACAGAAATTATACAATTTCTGAGAAGACATTGATTTATTTAAACTAAT
TCTCAAGTTGTGTTTGAAAGTATGACCTCACAGTCAGCTGTCCATAGCAAACATGTCTAT
ATATGGTTGCCAACGTTTGGTTTATAATTTAAATGTTATTAAAAATTTTAAATTTTAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               59-905, gnl|bosTau2|chr13 (51404289-51405135)
               

               
               59-905, gnl|Hg17|chr4 (6836423-6837447)
               

               
               59-905, gnl|Mm7|chr5 (35829685-35828813)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-905, gnl|bosTau2|chr13 (51404289-51405135)
               

               
               59-905, gnl|Hg17|chr4 (6836423-6837447)
               

               
               59-905, gnl|Mm7|chr5 (35829685-35828813)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               fco (0.314416)
               

               
               spl (0.286369)
               

               
               che (0.272628)
               

               
               bla (0.248694)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               spc (0.113366)

	59-905, gnl\|bosTau2\|chr13 (51404289-51405135)
	59-905, gnl\|Hg17\|chr4 (6836423-6837447)
	59-905, gnl\|Mm7\|chr5 (35829685-35828813)

	fbs (0.350693)
	fco (0.314416)
	spl (0.286369)
	che (0.272628)
	bla (0.248694)
	cbe (0.239234)
	mgp (0.230681)
	nlu (0.191681)
	cmu (0.186393)
	fty (0.17584)
	rec (0.17307)
	fhi (0.169578)
	bfe (0.149858)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	pty (0.142714)
	csk (0.140746)
	cst (0.140036)
	cov (0.132153)
	thg (0.126791)
	ese (0.126502)
	spc (0.113366)