Non-Coding RNA Search

Ss1.1-Pig4-TMW8021H19.3

Sequence:


               
               TGATGATCAAAAAGTTTCAGATGATGATAAAGAAAAGGGAGAGGGAGCTCTTCCAACTGG
GAAATCAAAAAAGAAAAAGAAGAAAAAGAAGAAGCAAGGTGAAGATAACTCTCCTACACA
GGACACAGAAGAATTAGAAAAAGAGATTAGAGAAGAGCTTCCAGTGAATACCTCGAAAGT
CCGTCCAAAACAGGAGAAAGCTTTTTCCTTAAAGACCATAAGCACTAGTGATCCTGCAGA
AGCACTCATCAGAAATAGCCAGCCTATCAAGACTCTTCCACCTACTATTTCTACCGAGCC
ATCTGTTACTTTATCAAAAAGTGATTCTGACAAGAGCTCTTCCCAAGTGCCACCGATGCT
ACAAGAAACAGATAAATCCAAGTCAAATACTAAGCAAAATAGTGTGCCTCCTTCACAGAC
CAAGTCTGAAACTAGTTGGGAATCTCCCAAACAAATAAAAAAGAAGAAAAAAGCCAGACG
GGAAACGTGAATATTTTTTTTCCTGAATTGGACATGTGTTTGTAAACACTGTCTTGAAGA
TTATGCTGTTTATGCAATAATTTGTGAACATGTACAGAGTTTTATATAAATTTAAACCAA
TTTTTAAAACAAGACTGTGAACACAACCACCGTAAAAATGGAATCAAAGGAAAGTTAATT
TATGAAATTAAGAGGTCAGCAGAATATACTACAGTGCTGGAAGACACTTGGGGAAAGTCT
CTCTTCAATTTAACAAGAACAATCTTAATTTAAGAATATTATCCTGGTTTTATAACAGTG
CCCTGTTTACAACAGATTGTGCCCTATCTCATCTGCAGCTGAGGAATAAAGGATTCTGAT
TAGAGAGAAGGTTGCCTACAAATTAGTTGGCAGCTTCTTGGATCTTATGCACGGAACTTA
AACCATTTGAATACATTTTATGCTTAAATCAAAGTGCTTTGATCAAATGCATAATCTGCC
ATATCTTTACATATTTGTTGGTAGCAGTTTGTATTAAAGGAATCACAAGTGCAAATAAAA
AGTCATTTATTCTTTGTTTAACTAAACTCTCATGGTTTGGTTTACAATTTTTAAAAAGTT
CTTAAAACATTCAAAATGCAATTGACACTTGTATGGCTTATGAAGTTATTTTTGATGAAG
TCTTACATTACTTGAATTGTTCAAAGTACAGTGTATTTTAAGTTAAGAAAGGTAAACTAT
ATATGTATTTGTCTTATACTTTTAAGGTTCAGACTCACAAATAATGCTCTTGTTTATGAT
TTGAATACTTTCAGACAAAATCCAACTTATGTTTTTCCTTTCCCTAGCAATTACTTTTTT
CCAGTGTCAGCTCTTCTTCATTACTAATACTTTTTGACTTTAAAAAGGAAGTCTTTCACA
AACTAGTTATACAGACAGAACTTTTGAGTCTATGATGGCGAATGAAAAACTAGAGTCAGA
CAGCTTTAAATTGACATTGTCAAGACCTCCAGTTATCAGGAATACATTTTTTTACTGCCT
TAACCTGTAGTGCGTAGAATATGCATCAATTTCTTGAAGGGGAGTCATGTTTTTATAAGA
ATTTTCATGTAACTATTGCAATCGTGGTCAAATAAGGAACGTTTCCTGCTTGAAACTATA
TGGATTTAAACGACGTGTGAGATGTTGTTTCACCGTTTTCAGGCACTGTGTAATTCTATT
GTAATAAACTGGCAGGTATCTTTGTAACTATAACTAGTGCATGCTCAGCCATGTACACTG
TAAATAGCCTTTACCAAACGTGTTTGACAAGGACCATAATTAACATCACTTAGTGAATTG
TGATAAAGAAAAAAAGCCATGACTTATTTGATGTGATTGGCTTAATTGTTTTTCTGTGGC
GCCAAGAATGAAACTGTTTAACAGCTGTAACCAATGGTACTGATCTATCCATCCAATCTT
GTCTTTATTCTATTTGATTGTGGTTCGATAGTATTGCATTGTCACACTGGGAAAGCTAAA
GAGACAAAATGGTTTTGGTTTCGCTGAAGACTGGCCTTATTAATGGACAGCTTTCCTAAC
AAGTGATTATTAACTTTTATCAGGTGTTAACATCTGTTTCAGGAACATGGCAGTATGTTT
ACATGTCAGAAGTTTTGTTTTAATTCTATGATATTTCTAAATTGATTTGTTTAAATAAAT
TCAGCAAATGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGATCAAAAAGTTTCAGATGATGATAAAGAAAAGGGAGAGGGAGCTCTTCCAACTGG
GAAATCAAAAAAGAAAAAGAAGAAAAAGAAGAAGCAAGGTGAAGATAACTCTCCTACACA
GGACACAGAAGAATTAGAAAAAGAGATTAGAGAAGAGCTTCCAGTGAATACCTCGAAAGT
CCGTCCAAAACAGGAGAAAGCTTTTTCCTTAAAGACCATAAGCACTAGTGATCCTGCAGA
AGCACTCATCAGAAATAGCCAGCCTATCAAGACTCTTCCACCTACTATTTCTACCGAGCC
ATCTGTTACTTTATCAAAAAGTGATTCTGACAAGAGCTCTTCCCAAGTGCCACCGATGCT
ACAAGAAACAGATAAATCCAAGTCAAATACTAAGCAAAATAGTGTGCCTCCTTCACAGAC
CAAGTCTGAAACTAGTTGGGAATCTCCCAAACAAATAAAAAAGAAGAAAAAAGCCAGACG
GGAAACGTGAATATTTTTTTTCCTGAATTGGACATGTGTTTGTAAACACTGTCTTGAAGA
TTATGCTGTTTATGCAATAATTTGTGAACATGTACAGAGTTTTATATAAATTTAAACCAA
TTTTTAAAACAAGACTGTGAACACAACCACCGTAAAAATGGAATCAAAGGAAAGTTAATT
TATGAAATTAAGAGGTCAGCAGAATATACTACAGTGCTGGAAGACACTTGGGGAAAGTCT
CTCTTCAATTTAACAAGAACAATCTTAATTTAAGAATATTATCCTGGTTTTATAACAGTG
CCCTGTTTACAACAGATTGTGCCCTATCTCATCTGCAGCTGAGGAATAAAGGATTCTGAT
TAGAGAGAAGGTTGCCTACAAATTAGTTGGCAGCTTCTTGGATCTTATGCACGGAACTTA
AACCATTTGAATACATTTTATGCTTAAATCAAAGTGCTTTGATCAAATGCATAATCTGCC
ATATCTTTACATATTTGTTGGTAGCAGTTTGTATTAAAGGAATCACAAGTGCAAATAAAA
AGTCATTTATTCTTTGTTTAACTAAACTCTCATGGTTTGGTTTACAATTTTTAAAAAGTT
CTTAAAACATTCAAAATGCAATTGACACTTGTATGGCTTATGAAGTTATTTTTGATGAAG
TCTTACATTACTTGAATTGTTCAAAGTACAGTGTATTTTAAGTTAAGAAAGGTAAACTAT
ATATGTATTTGTCTTATACTTTTAAGGTTCAGACTCACAAATAATGCTCTTGTTTATGAT
TTGAATACTTTCAGACAAAATCCAACTTATGTTTTTCCTTTCCCTAGCAATTACTTTTTT
CCAGTGTCAGCTCTTCTTCATTACTAATACTTTTTGACTTTAAAAAGGAAGTCTTTCACA
AACTAGTTATACAGACAGAACTTTTGAGTCTATGATGGCGAATGAAAAACTAGAGTCAGA
CAGCTTTAAATTGACATTGTCAAGACCTCCAGTTATCAGGAATACATTTTTTTACTGCCT
TAACCTGTAGTGCGTAGAATATGCATCAATTTCTTGAAGGGGAGTCATGTTTTTATAAGA
ATTTTCATGTAACTATTGCAATCGTGGTCAAATAAGGAACGTTTCCTGCTTGAAACTATA
TGGATTTAAACGACGTGTGAGATGTTGTTTCACCGTTTTCAGGCACTGTGTAATTCTATT
GTAATAAACTGGCAGGTATCTTTGTAACTATAACTAGTGCATGCTCAGCCATGTACACTG
TAAATAGCCTTTACCAAACGTGTTTGACAAGGACCATAATTAACATCACTTAGTGAATTG
TGATAAAGAAAAAAAGCCATGACTTATTTGATGTGATTGGCTTAATTGTTTTTCTGTGGC
GCCAAGAATGAAACTGTTTAACAGCTGTAACCAATGGTACTGATCTATCCATCCAATCTT
GTCTTTATTCTATTTGATTGTGGTTCGATAGTATTGCATTGTCACACTGGGAAAGCTAAA
GAGACAAAATGGTTTTGGTTTCGCTGAAGACTGGCCTTATTAATGGACAGCTTTCCTAAC
AAGTGATTATTAACTTTTATCAGGTGTTAACATCTGTTTCAGGAACATGGCAGTATGTTT
ACATGTCAGAAGTTTTGTTTTAATTCTATGATATTTCTAAATTGATTTGTTTAAATAAAT
TCAGCAAATGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61848367|ref|XP_580458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61848367|ref|XP_580458.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               120-262, gnl|bosTau2|chr14 (40081739-40081597)
               

               
               120-262, gnl|Hg17|chr8 (98800451-98800593)
               

               
               120-262, gnl|Mm7|chr15 (34245635-34245777)
               


               
               420-2172, gnl|bosTau2|chr14 (40078888-40077165)
               

               
               420-2172, gnl|Hg17|chr8 (98806004-98807718)
               

               
               420-2172, gnl|Mm7|chr15 (34249642-34251336)
               


               
               1676-1955, gnl|bosTau2|chr10 (47441730-47442007)
               

               
               1676-1955, gnl|Hg17|chr8 (98807229-98807488)
               

               
               1676-1955, gnl|Mm7|chr15 (34250867-34251127)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-262, gnl|bosTau2|chr14 (40081739-40081597)
               

               
               120-262, gnl|Hg17|chr8 (98800451-98800593)
               

               
               120-262, gnl|Mm7|chr15 (34245635-34245777)
               


               
               420-2172, gnl|bosTau2|chr14 (40078888-40077165)
               

               
               420-2172, gnl|Hg17|chr8 (98806004-98807718)
               

               
               420-2172, gnl|Mm7|chr15 (34249642-34251336)
               


               
               1676-1955, gnl|bosTau2|chr10 (47441730-47442007)
               

               
               1676-1955, gnl|Hg17|chr8 (98807229-98807488)
               

               
               1676-1955, gnl|Mm7|chr15 (34250867-34251127)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

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               tra (0.492368)
               

               
               tbr (0.462535)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.492368)
               

               
               tbr (0.462535)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               ova (0.258264)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               ldo (0.194005)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	120-262, gnl\|bosTau2\|chr14 (40081739-40081597)
	120-262, gnl\|Hg17\|chr8 (98800451-98800593)
	120-262, gnl\|Mm7\|chr15 (34245635-34245777)

	420-2172, gnl\|bosTau2\|chr14 (40078888-40077165)
	420-2172, gnl\|Hg17\|chr8 (98806004-98807718)
	420-2172, gnl\|Mm7\|chr15 (34249642-34251336)

	1676-1955, gnl\|bosTau2\|chr10 (47441730-47442007)
	1676-1955, gnl\|Hg17\|chr8 (98807229-98807488)
	1676-1955, gnl\|Mm7\|chr15 (34250867-34251127)

	tra (0.492368)
	tbr (0.462535)
	aor (0.390549)
	elu (0.385356)
	liv (0.292569)
	lin (0.291206)
	ova (0.258264)
	cty (0.20816)
	tes (0.207814)
	hea (0.204499)
	ldo (0.194005)
	mgm (0.180343)
	sin (0.174948)
	mcp (0.170648)
	csp (0.161186)
	bfe (0.149858)
	ssp (0.13552)
	ste (0.135208)
	lyg (0.133103)
	ret (0.128733)
	eru (0.120048)
	pgl (0.118483)
	jca (0.11396)
	eje (0.0988338)