Non-Coding RNA Search

Ss1.1-Pig4-TMW8021J02.3

Sequence:


               
               GCAGGCGGAGGGCCGGGTGGAACCCATCCACGCCGTGGTGCTGCCGCGAGGGAAGTCGCT
GGACCAGTGTGCAGAGATCCTGCAGAAGCGGAGCCACGGCGGCCAGGCTGGCGCCAGCAG
ACCCCCGAAGCGCCGGGGCAGAGGGAGTGGGCCTGGGGGCCGCCCACCCCCCCGGAGCGT
GTTCGACTTCCTGAATGAGAAGCTGCAAGGCAGGGCTCCGGGGGCGCTGGAGGCCGGGGC
AGCCCCCCCGGGGAGGAGGCGCGGCAAGGAGGTGTACCACGCCAGCAAGAGTGCCAGGCG
GGCCCTGAGCCTGCGGCTCCTCCAGACCGAGGAGAGGATCGAGCAGACCCAGCGCGCCAT
CCGCGGCATCCAGGAGGCCCTGGCCCGAAACACCGGCCGGCACAACGTGACGGCGGCCCA
GCTGCAGGAGAAGTTGGCAGGGGCCCAGCGGCAGCTGGGGCAGCTCCGGGCCCAGGAGGC
CGGCCTGCAGCGGGAGCAGAGCCAGGCAGACACCCACAAGAAAATGACCGAGTTCTAGAG
CCCTGCGCGCCTCCACGGCTCCCACTGTCCCGGGAGAGAGGCTGTCCTGCGGCAGCTGGG
ACTCCGCAAGAAGAGGAGCCCGCTCGCCCCCAGGCCAGACCCCTGGCGGCCTTCTTGCCA
GCCGAGGGCAGGTTGTGGACACTGCCGAGTGGAGCCGGGGCTGCCTGTTGAGCCCACCTG
TGTGTCTTGGGGAGTCCCCTTAGCAGGGACATTAAAGTGACTTTGTCGGAGTGTCTTTCA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCGGAGGGCCGGGTGGAACCCATCCACGCCGTGGTGCTGCCGCGAGGGAAGTCGCT
GGACCAGTGTGCAGAGATCCTGCAGAAGCGGAGCCACGGCGGCCAGGCTGGCGCCAGCAG
ACCCCCGAAGCGCCGGGGCAGAGGGAGTGGGCCTGGGGGCCGCCCACCCCCCCGGAGCGT
GTTCGACTTCCTGAATGAGAAGCTGCAAGGCAGGGCTCCGGGGGCGCTGGAGGCCGGGGC
AGCCCCCCCGGGGAGGAGGCGCGGCAAGGAGGTGTACCACGCCAGCAAGAGTGCCAGGCG
GGCCCTGAGCCTGCGGCTCCTCCAGACCGAGGAGAGGATCGAGCAGACCCAGCGCGCCAT
CCGCGGCATCCAGGAGGCCCTGGCCCGAAACACCGGCCGGCACAACGTGACGGCGGCCCA
GCTGCAGGAGAAGTTGGCAGGGGCCCAGCGGCAGCTGGGGCAGCTCCGGGCCCAGGAGGC
CGGCCTGCAGCGGGAGCAGAGCCAGGCAGACACCCACAAGAAAATGACCGAGTTCTAGAG
CCCTGCGCGCCTCCACGGCTCCCACTGTCCCGGGAGAGAGGCTGTCCTGCGGCAGCTGGG
ACTCCGCAAGAAGAGGAGCCCGCTCGCCCCCAGGCCAGACCCCTGGCGGCCTTCTTGCCA
GCCGAGGGCAGGTTGTGGACACTGCCGAGTGGAGCCGGGGCTGCCTGTTGAGCCCACCTG
TGTGTCTTGGGGAGTCCCCTTAGCAGGGACATTAAAGTGACTTTGTCGGAGTGTCTTTCA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               120-239, - strand, RNAz p=0.964709

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.964709

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-425, gnl|bosTau2|chr13 (35103381-35102961)
               

               
               1-425, gnl|Hg17|chr20 (61836965-61837394)
               

               
               1-425, gnl|Mm7|chr2 (181880696-181881101)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-425, gnl|bosTau2|chr13 (35103381-35102961)
               

               
               1-425, gnl|Hg17|chr20 (61836965-61837394)
               

               
               1-425, gnl|Mm7|chr2 (181880696-181881101)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               csp (0.483559)
               

               
               elu (0.385356)
               

               
               cga (0.279096)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.483559)
               

               
               elu (0.385356)
               

               
               cga (0.279096)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	1-425, gnl\|bosTau2\|chr13 (35103381-35102961)
	1-425, gnl\|Hg17\|chr20 (61836965-61837394)
	1-425, gnl\|Mm7\|chr2 (181880696-181881101)

	csp (0.483559)
	elu (0.385356)
	cga (0.279096)
	fty (0.17584)
	mcp (0.170648)
	fhi (0.169578)
	cli (0.152812)
	cov (0.132153)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)
	cty (0.10408)