Non-Coding RNA Search

Ss1.1-Pig4-TMW8021J08.3.5

Sequence:


               
               GCTTTAAGTTTGAGGGTGGTTGTGGGTTTGGGTTTGTTTTTGTTTTTGTTTTTGTTTTGG
TGTGTGTGTGTGAATTGTGCTTAGACAGGTTGCAGATTTAATCTTCACCTACCAAGAGAT
GGCCTCCTCCTCGGACAGCCGCTCAGTGGACCATTAGACTCGGGAAGAAGACCCTTCTGG
TGGCTGTCCCTCCTGGGTACTCTCATTCATGTTTTCGTTTTGTTTTCCCTTCTGCTGCTG
CTCTTGGCAGCAGCTTGGTCATCGTCTGCTTGTGGGAGTGGGAAATGGGTATTTCAGACC
CAGCACACATTCTAAATTTAAAACGAGTAATAATTGGAACAAATAAAGGTTCTTGTGCCC
AAAGTGACTCTACATGGGAAAAACAAACACAGCTTTTTTTTCAGAGTGAGACTGAATAGG
AGGAAGGGATTCAGAAATAGGACGTAGTAGAACAGGTTTTGAAAGAAGAAAATTTTCTCT
CATATATGTTAAGAGGAAATCAGACAGTTTAAATGCCTGCTAATCAAATGTTTACTTAGC
TACCCATATGTCCAGGTTGCTGGCAGGGTTTCTTTCAGAAAGTGTTGGCCTGCTGAATTT
GGAGAACTTCAGACAGTAGCTGTGTGGGGTTTTTTTGTTTGTTTGTTTTTTGCCACAACC
AATAGGACAACAGCAGAATTAGCCAATCCTAAGATCTTCTAAAGATGATTTTTGAATGTC
CCACGAGGATAATTTAATTTCTCTTTCCAATGTGTGTTTTTAGTTTAGAAGAGCTGTATT
CCACAAGATTTGAGTCAATGAGGTTGGACGATATCTTTTTTTTAATTCAAAAAGCACAAT
CAATCTTTTCTTTGAAAAATCTATATAAAGTACAACTTGCTTTTAGCATGATTATTTTCC
TAAATAAAAAGCAAAGAATTTACTTATTTTATGTTAATTACGGGCATGAAGCAAAAGGTT
TTCTTTTTTAAAAAAATTAAAAGTGCAGTTATGTAGGGCTGTGGTTAGTTCACCGTACTG
AGTTATCTATCTAGCATTTGTGGCTTGTTGGAAGGGTAGTATTAACTATTTAACATGTAA
TGGTGTACTTTAACTCTTATCTAGCACGTTGTCTTCTCATTACTTTGGGGGAGGGAGGGT
CTCTGCTGGCACTGTCTAACTTGCTTACCTGCTGAATTAGCAGTTTGCTTGTGCTATAGC
CGTTACTTGTAGGTGCGACGTAGGGTAGGCTTAAAGTGCTGGGTGGTGACTTGAGTTCAA
ACAATAAAAAATTGTATTTTTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTAAGTTTGAGGGTGGTTGTGGGTTTGGGTTTGTTTTTGTTTTTGTTTTTGTTTTGG
TGTGTGTGTGTGAATTGTGCTTAGACAGGTTGCAGATTTAATCTTCACCTACCAAGAGAT
GGCCTCCTCCTCGGACAGCCGCTCAGTGGACCATTAGACTCGGGAAGAAGACCCTTCTGG
TGGCTGTCCCTCCTGGGTACTCTCATTCATGTTTTCGTTTTGTTTTCCCTTCTGCTGCTG
CTCTTGGCAGCAGCTTGGTCATCGTCTGCTTGTGGGAGTGGGAAATGGGTATTTCAGACC
CAGCACACATTCTAAATTTAAAACGAGTAATAATTGGAACAAATAAAGGTTCTTGTGCCC
AAAGTGACTCTACATGGGAAAAACAAACACAGCTTTTTTTTCAGAGTGAGACTGAATAGG
AGGAAGGGATTCAGAAATAGGACGTAGTAGAACAGGTTTTGAAAGAAGAAAATTTTCTCT
CATATATGTTAAGAGGAAATCAGACAGTTTAAATGCCTGCTAATCAAATGTTTACTTAGC
TACCCATATGTCCAGGTTGCTGGCAGGGTTTCTTTCAGAAAGTGTTGGCCTGCTGAATTT
GGAGAACTTCAGACAGTAGCTGTGTGGGGTTTTTTTGTTTGTTTGTTTTTTGCCACAACC
AATAGGACAACAGCAGAATTAGCCAATCCTAAGATCTTCTAAAGATGATTTTTGAATGTC
CCACGAGGATAATTTAATTTCTCTTTCCAATGTGTGTTTTTAGTTTAGAAGAGCTGTATT
CCACAAGATTTGAGTCAATGAGGTTGGACGATATCTTTTTTTTAATTCAAAAAGCACAAT
CAATCTTTTCTTTGAAAAATCTATATAAAGTACAACTTGCTTTTAGCATGATTATTTTCC
TAAATAAAAAGCAAAGAATTTACTTATTTTATGTTAATTACGGGCATGAAGCAAAAGGTT
TTCTTTTTTAAAAAAATTAAAAGTGCAGTTATGTAGGGCTGTGGTTAGTTCACCGTACTG
AGTTATCTATCTAGCATTTGTGGCTTGTTGGAAGGGTAGTATTAACTATTTAACATGTAA
TGGTGTACTTTAACTCTTATCTAGCACGTTGTCTTCTCATTACTTTGGGGGAGGGAGGGT
CTCTGCTGGCACTGTCTAACTTGCTTACCTGCTGAATTAGCAGTTTGCTTGTGCTATAGC
CGTTACTTGTAGGTGCGACGTAGGGTAGGCTTAAAGTGCTGGGTGGTGACTTGAGTTCAA
ACAATAAAAAATTGTATTTTTTCA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               1032-1284, gnl|bosTau2|chr11 (52880038-52879793)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1032-1284, gnl|bosTau2|chr11 (52880038-52879793)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               tbr (0.462535)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               rec (0.17307)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               bla (0.124347)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	tbr (0.462535)
	cmu (0.372787)
	vin (0.332557)
	rec (0.17307)
	cli (0.152812)
	isp (0.150376)
	ski (0.146735)
	lin (0.145603)
	bla (0.124347)
	cbl (0.114797)
	ldo (0.0970026)