Ss1.1-Pig4-TMW8021J11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCACACCCAGCTGCTCCCTGGTGGCCTCCAGGGCCTCATCCTCAACCCCATCTTCCGC CAAAACCTCCGCATTGCCCTTCTGGGTGGGGGCAAGGCCTGGTCTGATGACACAAGTCAG CTGGGACCAGACAAGCATGCCCGGGATGTGCCCTCGCTTGACAAGTATGCTGAGGAGCGA TGGGAGGTGGTCCTGCACTTCATGGTGGGCTCCCCCAGTGCAGCCGTCAGCCAGGACTTG GCTCAGCTCCTCAGCCAGGCTGGGCTCATGAAGAGTGCTGAACCTGGAGAGCCGCCTTGC ATTACCTCTGCGGGCTTCCAATTCCTGTTGTTGGACACCCCGGCCCAGCTCTGGTACTTT ATGTTGCAGTACCTGCAGACAGCCCAGAGTCGGGGCATGGACCTAGTGGAGATTCTCTCC TTCCTCTTCCAGCTCAGCTTCTCTACTCTGGGCAAGGATTACTCTGTGGAAGGTATGAGT GATTCTCTGTTGAACTTCCTGCAACATCTCCGTGAGTTGGGCCTTGTTTTCCAGAGGAAG AGGAAGTCTCGGCGTTACTACCCCACGCGCCTGGCCATCAATCTCTCATCAGGTGTTTCT GGGGCTGGGGGCACTGTGCATCAGCCAGGTTTCATCGTTGTGGAAACCAATTATCGACTG TACGCCTACACGGAGTCGGAGCTGCAGATCGCCCTTATTGCCCTTTTCTCTGAGATGCTC TATCGCTTCCCCAACATGGTGGTGGCACAGGTGACCCGGGAGAGTGTGCAGCAGGCCATT GCCAGTGGCATCACAGCCCAACAGATCATCCATTTCCTAAGGACAAGGGCCCACCCAGTG ATGCTTAAACAGACACCTGTGCTGCCTCCCACCATCACAGACCAGATTCGGTTGTGGGAG CTAGAAAGGGACAGACTACGGTTCACTGAAGGCGTCCTCTATAACCAGTTCCTGTCACAA GTGGACTTTGAGCTGCTGCTGGCCCACGCGCGGGAGCTGGGCGTCCTAGTGTTCGAGAAC TCGGCAAAGCGGCTCATGGTGGTGACCCCGGCGGGACACAGCGACGTCAAGCGCTTCTGG AAGCGGCAGAAGCACAGCTCTTGAGACTGCGGGACCGGGCGGGACAGTACTGTGACAGTA CCGTGACGGGCGGGCCGCTTGGAGGCGGACGCCGCCTCAGAACTCAGGGGTATTTTTTAT CACACGTCAAGACTCTTCTTGTTTAATAAAATTGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCACACCCAGCTGCTCCCTGGTGGCCTCCAGGGCCTCATCCTCAACCCCATCTTCCGC CAAAACCTCCGCATTGCCCTTCTGGGTGGGGGCAAGGCCTGGTCTGATGACACAAGTCAG CTGGGACCAGACAAGCATGCCCGGGATGTGCCCTCGCTTGACAAGTATGCTGAGGAGCGA TGGGAGGTGGTCCTGCACTTCATGGTGGGCTCCCCCAGTGCAGCCGTCAGCCAGGACTTG GCTCAGCTCCTCAGCCAGGCTGGGCTCATGAAGAGTGCTGAACCTGGAGAGCCGCCTTGC ATTACCTCTGCGGGCTTCCAATTCCTGTTGTTGGACACCCCGGCCCAGCTCTGGTACTTT ATGTTGCAGTACCTGCAGACAGCCCAGAGTCGGGGCATGGACCTAGTGGAGATTCTCTCC TTCCTCTTCCAGCTCAGCTTCTCTACTCTGGGCAAGGATTACTCTGTGGAAGGTATGAGT GATTCTCTGTTGAACTTCCTGCAACATCTCCGTGAGTTGGGCCTTGTTTTCCAGAGGAAG AGGAAGTCTCGGCGTTACTACCCCACGCGCCTGGCCATCAATCTCTCATCAGGTGTTTCT GGGGCTGGGGGCACTGTGCATCAGCCAGGTTTCATCGTTGTGGAAACCAATTATCGACTG TACGCCTACACGGAGTCGGAGCTGCAGATCGCCCTTATTGCCCTTTTCTCTGAGATGCTC TATCGCTTCCCCAACATGGTGGTGGCACAGGTGACCCGGGAGAGTGTGCAGCAGGCCATT GCCAGTGGCATCACAGCCCAACAGATCATCCATTTCCTAAGGACAAGGGCCCACCCAGTG ATGCTTAAACAGACACCTGTGCTGCCTCCCACCATCACAGACCAGATTCGGTTGTGGGAG CTAGAAAGGGACAGACTACGGTTCACTGAAGGCGTCCTCTATAACCAGTTCCTGTCACAA GTGGACTTTGAGCTGCTGCTGGCCCACGCGCGGGAGCTGGGCGTCCTAGTGTTCGAGAAC TCGGCAAAGCGGCTCATGGTGGTGACCCCGGCGGGACACAGCGACGTCAAGCGCTTCTGG AAGCGGCAGAAGCACAGCTCTTGAGACTGCGGGACCGGGCGGGACAGTACTGTGACAGTA CCGTGACGGGCGGGCCGCTTGGAGGCGGACGCCGCCTCAGAACTCAGGGGTATTTTTTAT CACACGTCAAGACTCTTCTTGTTTAATAAAATTGTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 76-387, + strand, RNAz p=0.576991 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 76-387, + strand, RNAz p=0.576991 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AB209479, + |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 76-189, gnl|bosTau2|chr23 (20668164-20668050) | |
| 76-189, gnl|canFam2|chr12 (3681329-3681446) | |
| 76-189, gnl|dasNov1|scaffold_268638 (3504-3388) | |
| 76-189, gnl|echTel1|scaffold_285870 (48052-47963) | |
| 76-189, gnl|fr1|chrUn (71129613-71129721) | |
| 76-189, gnl|hg17|chr6 (30986390-30986508) | |
| 76-189, gnl|Hg17|chr6 (30986404-30986520) | |
| 76-189, gnl|loxAfr1|scaffold_3325 (9629-9511) | |
| 76-189, gnl|mm7|chr17 (33771693-33771594) | |
| 76-189, gnl|Mm7|chr17 (33771695-33771580) | |
| 76-189, gnl|monDom2|scaffold_42 (18428622-18428509) | |
| 76-189, gnl|panTro1|chr5 (31449630-31449748) | |
| 76-189, gnl|rheMac2|chr4 (30485825-30485943) | |
| 76-189, gnl|rn3|chr20 (3224941-3225058) | |
| 76-189, gnl|tetNig1|chrUn_random (87730596-87730690) | |
| 76-189, gnl|xenTro1|scaffold_34 (320622-320713) | |
| 274-387, gnl|bosTau2|chr23 (20667438-20667325) | |
| 274-387, gnl|Hg17|chr6 (30986912-30987025) | |
| 274-387, gnl|Mm7|chr17 (33771195-33771082) | |
| 673-811, gnl|bosTau2|chr23 (20666252-20666115) | |
| 673-811, gnl|canFam2|chr12 (3683111-3683279) | |
| 673-811, gnl|danRer3|chr19 (31816283-31816132) | |
| 673-811, gnl|dasNov1|scaffold_268638 (498-333) | |
| 673-811, gnl|fr1|chrUn (71132142-71132288) | |
| 673-811, gnl|hg17|chr6 (30988052-30988218) | |
| 673-811, gnl|Hg17|chr6 (30988083-30988220) | |
| 673-811, gnl|loxAfr1|scaffold_3325 (7962-7819) | |
| 673-811, gnl|mm7|chr17 (33770193-33770024) | |
| 673-811, gnl|Mm7|chr17 (33770157-33770020) | |
| 673-811, gnl|monDom2|scaffold_42 (18425972-18425802) | |
| 673-811, gnl|oryCun1|scaffold_135490 (8306-8142) | |
| 673-811, gnl|panTro1|chr5 (31451292-31451458) | |
| 673-811, gnl|rheMac2|chr4 (30487483-30487649) | |
| 673-811, gnl|rn3|chr20 (3226414-3226583) | |
| 673-811, gnl|tetNig1|chrUn_random (87731881-87732033) | |
| 673-811, gnl|xenTro1|scaffold_34 (325073-325223) | |
| 930-1236, gnl|bosTau2|chr23 (20663930-20663628) | |
| 930-1236, gnl|Hg17|chr6 (30989565-30989852) | |
| 930-1236, gnl|Mm7|chr17 (33768721-33768457) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-189, gnl|bosTau2|chr23 (20668164-20668050) | |
| 76-189, gnl|canFam2|chr12 (3681329-3681446) | |
| 76-189, gnl|dasNov1|scaffold_268638 (3504-3388) | |
| 76-189, gnl|echTel1|scaffold_285870 (48052-47963) | |
| 76-189, gnl|fr1|chrUn (71129613-71129721) | |
| 76-189, gnl|hg17|chr6 (30986390-30986508) | |
| 76-189, gnl|Hg17|chr6 (30986404-30986520) | |
| 76-189, gnl|loxAfr1|scaffold_3325 (9629-9511) | |
| 76-189, gnl|mm7|chr17 (33771693-33771594) | |
| 76-189, gnl|Mm7|chr17 (33771695-33771580) | |
| 76-189, gnl|monDom2|scaffold_42 (18428622-18428509) | |
| 76-189, gnl|panTro1|chr5 (31449630-31449748) | |
| 76-189, gnl|rheMac2|chr4 (30485825-30485943) | |
| 76-189, gnl|rn3|chr20 (3224941-3225058) | |
| 76-189, gnl|tetNig1|chrUn_random (87730596-87730690) | |
| 76-189, gnl|xenTro1|scaffold_34 (320622-320713) | |
| 274-387, gnl|bosTau2|chr23 (20667438-20667325) | |
| 274-387, gnl|Hg17|chr6 (30986912-30987025) | |
| 274-387, gnl|Mm7|chr17 (33771195-33771082) | |
| 673-811, gnl|bosTau2|chr23 (20666252-20666115) | |
| 673-811, gnl|canFam2|chr12 (3683111-3683279) | |
| 673-811, gnl|danRer3|chr19 (31816283-31816132) | |
| 673-811, gnl|dasNov1|scaffold_268638 (498-333) | |
| 673-811, gnl|fr1|chrUn (71132142-71132288) | |
| 673-811, gnl|hg17|chr6 (30988052-30988218) | |
| 673-811, gnl|Hg17|chr6 (30988083-30988220) | |
| 673-811, gnl|loxAfr1|scaffold_3325 (7962-7819) | |
| 673-811, gnl|mm7|chr17 (33770193-33770024) | |
| 673-811, gnl|Mm7|chr17 (33770157-33770020) | |
| 673-811, gnl|monDom2|scaffold_42 (18425972-18425802) | |
| 673-811, gnl|oryCun1|scaffold_135490 (8306-8142) | |
| 673-811, gnl|panTro1|chr5 (31451292-31451458) | |
| 673-811, gnl|rheMac2|chr4 (30487483-30487649) | |
| 673-811, gnl|rn3|chr20 (3226414-3226583) | |
| 673-811, gnl|tetNig1|chrUn_random (87731881-87732033) | |
| 673-811, gnl|xenTro1|scaffold_34 (325073-325223) | |
| 930-1236, gnl|bosTau2|chr23 (20663930-20663628) | |
| 930-1236, gnl|Hg17|chr6 (30989565-30989852) | |
| 930-1236, gnl|Mm7|chr17 (33768721-33768457) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| col (0.195008) | |
| fty (0.17584) | |
| ctl (0.153069) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| col (0.195008) | |
| fty (0.17584) | |
| ctl (0.153069) | |
| ssp (0.13552) | |
| cov (0.132153) | |
| cly (0.120642) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |