Non-Coding RNA Search

Ss1.1-Pig4-TMW8021J20.3

Sequence:


               
               AGCTACATAAAAAATACATATTGAGCTGCTATTCAAGAGTCGCTACAAAATCTTGAAATA
AACAATAGCATAAGTCACATTTCTATTAGACTTCTCAAATTTTTACATTCTGATTTCTGG
TTGACATCTACTTTAAAAATATCCAATGAATGGCCAATTTCTAAGTTAGCCATATTTTTT
ACTAATTCCTTTTGAAGTAAAGTAAGGGTGTTGTTTTTTTTTTTTCTTTTGGTTAATTAT
TTTAAAATGTTAAAAGAGCAAACTATTTTTCACATTTCCTTGTGTAACATTGTATTTTTC
TTTTGCTTATTATGATCACTCGTTACATTTTTAGGGAGATGCTTCATTTATACTTTTATT
GTTTGGGGAGTAGTCTGTGAAATTTGACATATAGTATTTCCATTTGATTTAAAAATACTC
TTCATCACACTTTGGGTTTCCTCTCTAGCCCAAATATTATTTAGCGGAGTTTATCTTTTT
CATTTTTTCTATGTGGTTATTTTTTTATTTCTAATTGTATGATTTACTCTCTGGACATGT
GGATTGTAGAGTTGTGACTTATATTGTGTAGTACAGAACATGGTTAATTTTTATCAAAAA
TAGCCTTGGGCGAAAAGCAAGCTTGCTTATGTGTCCATGTAGTTTTTTTGCACATATGTT
AAATCTGCCTTATTAATTTTGTATCACTTTATGTCACATGGATTAACTAAATTCTACTTC
TGAACTGCTGATATTCCTAATTACATTATATACTGTATTTCTGCCCATTTTTTTCTATGT
ATGCACTTTTTGCTGAATAAATTTAGAAATTTTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTACATAAAAAATACATATTGAGCTGCTATTCAAGAGTCGCTACAAAATCTTGAAATA
AACAATAGCATAAGTCACATTTCTATTAGACTTCTCAAATTTTTACATTCTGATTTCTGG
TTGACATCTACTTTAAAAATATCCAATGAATGGCCAATTTCTAAGTTAGCCATATTTTTT
ACTAATTCCTTTTGAAGTAAAGTAAGGGTGTTGTTTTTTTTTTTTCTTTTGGTTAATTAT
TTTAAAATGTTAAAAGAGCAAACTATTTTTCACATTTCCTTGTGTAACATTGTATTTTTC
TTTTGCTTATTATGATCACTCGTTACATTTTTAGGGAGATGCTTCATTTATACTTTTATT
GTTTGGGGAGTAGTCTGTGAAATTTGACATATAGTATTTCCATTTGATTTAAAAATACTC
TTCATCACACTTTGGGTTTCCTCTCTAGCCCAAATATTATTTAGCGGAGTTTATCTTTTT
CATTTTTTCTATGTGGTTATTTTTTTATTTCTAATTGTATGATTTACTCTCTGGACATGT
GGATTGTAGAGTTGTGACTTATATTGTGTAGTACAGAACATGGTTAATTTTTATCAAAAA
TAGCCTTGGGCGAAAAGCAAGCTTGCTTATGTGTCCATGTAGTTTTTTTGCACATATGTT
AAATCTGCCTTATTAATTTTGTATCACTTTATGTCACATGGATTAACTAAATTCTACTTC
TGAACTGCTGATATTCCTAATTACATTATATACTGTATTTCTGCCCATTTTTTTCTATGT
ATGCACTTTTTGCTGAATAAATTTAGAAATTTTAGA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-145, gnl|bosTau2|chr5 (12705101-12704958)
               


               
               176-367, gnl|bosTau2|chr5 (12704870-12704679)
               


               
               381-789, gnl|bosTau2|chr5 (12703465-12703068)
               

               
               381-789, gnl|Hg17|chr12 (88309741-88310460)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-145, gnl|bosTau2|chr5 (12705101-12704958)
               


               
               176-367, gnl|bosTau2|chr5 (12704870-12704679)
               


               
               381-789, gnl|bosTau2|chr5 (12703465-12703068)
               

               
               381-789, gnl|Hg17|chr12 (88309741-88310460)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               lin (0.145603)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               pgl (0.118483)
               

               
               nbm (0.0993246)

	1-145, gnl\|bosTau2\|chr5 (12705101-12704958)

	176-367, gnl\|bosTau2\|chr5 (12704870-12704679)

	381-789, gnl\|bosTau2\|chr5 (12703465-12703068)
	381-789, gnl\|Hg17\|chr12 (88309741-88310460)