Non-Coding RNA Search

Ss1.1-Pig4-TMW8021L03.3

Sequence:


               
               GATAAACGTGGCGATCCCCCCATGTTCTCCCTTTATGGAAATTGGAGACGTGTACAAAGA
AGATGAATACGTGTATCTTATTAAACTTTTCAGAAACTTGCCTTTCTTAAGTGCAGTTTA
AAACTAGTAAACGTGGTCAACTAGTTAGATTAGAAGTTCAGAACCTAACGATAGTGTAGG
GTTTCTAAAATAAGTCCGTTTTGTCGTAGAAATTGATGATTGCCCTACAGATCTGCCAGG
CCCTGTCCGTGAAGGAAGAGATTTCGGGATCCGATTCTGTTGAAGAGCCCCTGACCCACG
AGGGGAGCCTCGAGCCGGGAAGGAGCACTTTCTCCGCGCGGGGGGCCAGTGTCCCGCTCG
GCGTCCGGAAAGGGGGGTTTGATTCGCTGGCCACTTCCTTTCTCTCTGACTTGGGCGCTG
AGATGAGAGTCTCTAATTCCATACATATTTAAAGGGGGGGGAAATGAAGCGGAAAACCGA
AATGCTTACGTCTGGAAAATTAAATGAATTCACATTTTCCACAGGTTTATTCCCCCCCAA
TTACCCAGAGGTCTTTGCGATCGAAGATACATAGATACATCTTTAAAAAAAAAAACAAAT
GAAGAATATCACATAAGACTTTTTTTAATCTAAAAGGCTGTAATTGGATTTTTGTTGTGT
TTAAAATCGAATAAGGCTTATGTGCTGGAGACAAGCTGGCTTTGTTGGTAAAGACAGAGC
AGCTGTTACGTGGTGGTGAAGCCAGATCTAGGCTGCGCGTCTGAAACATGCGGCCGGTCT
CCAACTACCTGCGGCGCACGCACCCACCAGCAGGTGAGAAAGAAAATAAGTTATGATTTT
GGTGCATTTCACGGGGTCTCCTGTGACTGGAAAAATTACCACTCTCCCGACTCTCCCGTG
GAACCCGTCGCTGATCTGACAGAGGCGTCAGCCTGCCGTCCCTGCGCTTGCCTCGGGGGG
TGGGGGGTGGGGGGCTCGAGGTCCCAACAGAGGTCGTGGAGAAAATCCACACAGGCTTCT
GTCCCGTTTCTCTAGTGTCTGAGACAAGCTTAAGTTGCAAAATGAATGAAACGCTCCAGG
TGTGTATATAAATGGCAAAACTTGTACTACTTTTTATAAAAGAACAAACTAGGCTTGATC
TAAAGTTTTATTGTCAACTGATCTTTAAAATAAATCTTACGTGATTTTAAATTACATTTT
TCATGAAAACGCCCCTTTCTCTAAATGTGCTCATCCTATACATCCGGCTCTCAGACCAGA
GGCATTGTCAATACAGTTTGCTGGGATTCTGTGGCTGGGAAAGGTGACAGGTTGGCGACT
TTGATACTGCAGGTATTAACTCCATTTTCATGGTTTACTATGAAAGTCATTTTTCACATT
ATTCTGTAATATACTGTTAGATTAAAACCATTGTATTAAGGTTGTTTAAAAATATGAGCA
TTATACCTCTGAAAATACACATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAACGTGGCGATCCCCCCATGTTCTCCCTTTATGGAAATTGGAGACGTGTACAAAGA
AGATGAATACGTGTATCTTATTAAACTTTTCAGAAACTTGCCTTTCTTAAGTGCAGTTTA
AAACTAGTAAACGTGGTCAACTAGTTAGATTAGAAGTTCAGAACCTAACGATAGTGTAGG
GTTTCTAAAATAAGTCCGTTTTGTCGTAGAAATTGATGATTGCCCTACAGATCTGCCAGG
CCCTGTCCGTGAAGGAAGAGATTTCGGGATCCGATTCTGTTGAAGAGCCCCTGACCCACG
AGGGGAGCCTCGAGCCGGGAAGGAGCACTTTCTCCGCGCGGGGGGCCAGTGTCCCGCTCG
GCGTCCGGAAAGGGGGGTTTGATTCGCTGGCCACTTCCTTTCTCTCTGACTTGGGCGCTG
AGATGAGAGTCTCTAATTCCATACATATTTAAAGGGGGGGGAAATGAAGCGGAAAACCGA
AATGCTTACGTCTGGAAAATTAAATGAATTCACATTTTCCACAGGTTTATTCCCCCCCAA
TTACCCAGAGGTCTTTGCGATCGAAGATACATAGATACATCTTTAAAAAAAAAAACAAAT
GAAGAATATCACATAAGACTTTTTTTAATCTAAAAGGCTGTAATTGGATTTTTGTTGTGT
TTAAAATCGAATAAGGCTTATGTGCTGGAGACAAGCTGGCTTTGTTGGTAAAGACAGAGC
AGCTGTTACGTGGTGGTGAAGCCAGATCTAGGCTGCGCGTCTGAAACATGCGGCCGGTCT
CCAACTACCTGCGGCGCACGCACCCACCAGCAGGTGAGAAAGAAAATAAGTTATGATTTT
GGTGCATTTCACGGGGTCTCCTGTGACTGGAAAAATTACCACTCTCCCGACTCTCCCGTG
GAACCCGTCGCTGATCTGACAGAGGCGTCAGCCTGCCGTCCCTGCGCTTGCCTCGGGGGG
TGGGGGGTGGGGGGCTCGAGGTCCCAACAGAGGTCGTGGAGAAAATCCACACAGGCTTCT
GTCCCGTTTCTCTAGTGTCTGAGACAAGCTTAAGTTGCAAAATGAATGAAACGCTCCAGG
TGTGTATATAAATGGCAAAACTTGTACTACTTTTTATAAAAGAACAAACTAGGCTTGATC
TAAAGTTTTATTGTCAACTGATCTTTAAAATAAATCTTACGTGATTTTAAATTACATTTT
TCATGAAAACGCCCCTTTCTCTAAATGTGCTCATCCTATACATCCGGCTCTCAGACCAGA
GGCATTGTCAATACAGTTTGCTGGGATTCTGTGGCTGGGAAAGGTGACAGGTTGGCGACT
TTGATACTGCAGGTATTAACTCCATTTTCATGGTTTACTATGAAAGTCATTTTTCACATT
ATTCTGTAATATACTGTTAGATTAAAACCATTGTATTAAGGTTGTTTAAAAATATGAGCA
TTATACCTCTGAAAATACACATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               648-885, + strand, RNAz p=0.973619

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               648-885, + strand, RNAz p=0.973619

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               2-239, gnl|bosTau2|chr1 (91460436-91460669)
               

               
               2-239, gnl|Hg17|chr21 (44349336-44349576)
               

               
               2-239, gnl|Mm7|chr10 (77840862-77840460)
               


               
               423-885, gnl|bosTau2|chr1 (91460815-91461301)
               

               
               423-885, gnl|Hg17|chr21 (44349748-44350244)
               


               
               988-1464, gnl|bosTau2|chr1 (91461420-91461900)
               

               
               988-1464, gnl|Hg17|chr21 (44350378-44350851)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-239, gnl|bosTau2|chr1 (91460436-91460669)
               

               
               2-239, gnl|Hg17|chr21 (44349336-44349576)
               

               
               2-239, gnl|Mm7|chr10 (77840862-77840460)
               


               
               423-885, gnl|bosTau2|chr1 (91460815-91461301)
               

               
               423-885, gnl|Hg17|chr21 (44349748-44350244)
               


               
               988-1464, gnl|bosTau2|chr1 (91461420-91461900)
               

               
               988-1464, gnl|Hg17|chr21 (44350378-44350851)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               sme (0.305437)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               mgm (0.180343)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	2-239, gnl\|bosTau2\|chr1 (91460436-91460669)
	2-239, gnl\|Hg17\|chr21 (44349336-44349576)
	2-239, gnl\|Mm7\|chr10 (77840862-77840460)

	423-885, gnl\|bosTau2\|chr1 (91460815-91461301)
	423-885, gnl\|Hg17\|chr21 (44349748-44350244)

	988-1464, gnl\|bosTau2\|chr1 (91461420-91461900)
	988-1464, gnl\|Hg17\|chr21 (44350378-44350851)

	cmu (0.372787)
	sme (0.305437)
	cbe (0.239234)
	ece (0.229305)
	mgm (0.180343)
	rec (0.17307)
	cut (0.169924)
	cki (0.165235)
	liv (0.146284)
	lnt (0.142308)
	csk (0.140746)
	spc (0.113366)
	nbm (0.0993246)